FvH4_1g05370

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011025
Physical Location & Seq
Forward (+)
2837210 .. 2841945
4736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05370.t5

Sequence Viewer

Length: 1068 bp
ATGACGGCGACCACCGTCCCCACTCTGACGCCGGTCTCCATTTCATACTCGGAGCTCAAGGAGAAGGAGACGGACTTATCGAGGAAGATTGAAGAAGGATTTGGGCCGAACGGGTTAGGGATTCTATCCGTCACTGATGTTCCTGGATTTTCATCATTGCGCCGAAATCTTCTACGTCTGTCACCAAGGCTGGCCAATCTCCCTGAAGAGGTGAAGAAGGAACTCGAAGATCCTGAGAGTAGGTATAATTTTGGATGGAGTCATGGAAAGGAAAAGTTGGAATCTGGAAAGCCAGATATGTTAAAAGGTTCTTTCTATGCAAACCCGATATTAGATACACCAACAACAGATGAGGCTCTAATTCAAAGGTACCCATCATATTGTGGATCAAATATATGGCCTAAACATGAATTGCCAGAACTTGAAGTGGCCTTCAAAGCTATGGGAAAGCTGATCCTTGAAGTTGGACTTATGGTGGCATTTCACTGTGATAGATATGTATCAAAGGCAATCAAAATGCGTGAGGATGAAGGCCTTGAACAAGTACTTTTTCGTGCTCGGTGTCATAAAGGGCGTCTGCTTTACTATTTTCCCACAAAAGAGAGCACTCCTACTGAAGATAACAAAAACATGTCTTCTTGGTGTGGTTGGCATACAGACCATGGTTCACTTACAGGCCTGACCTGTGCCATGTACACGAGAGATGCTGTTGAAATACCATGCCCTGATAGTGGTGCTGGCCTTTATATTAGGACAAGAAGTGATCAGATCGTCAAAGTTGTCTTTGGAGAAGATGAAATAGCATACCAAATTGGTGAAACCACAGAAGTTATGTCCAGAGGTTATCTTTGTGCAACACCTCATTGTGTGCGGGCACCCAAGGGAGAGGAAGCTTCTGGTCTTGATCGTTCGACATTTGCTTTCTTTATGCAACCTGACTGGGATGAGAAGCTAAACTTTCCTGAGGAAGTCCATATCCATAAAGAGTTGATACCACCAAATGGTTCTCTTACCTTTGGAGAGTACACAGAGAAGCTCCTCGACAAATATTACCATCTCAAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

356

Amino Acids

40.18

Weight (kDa)

5.5

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011025)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13400 AT4G13400
fragaria_vesca FvH4_1g05370 FvH4_1g05370 FvH4_1g05370 FvH4_1g05370 FvH4_1g05370 FvH4_1g05370
malus_domestica MD02G1062200.v1.1
prunus_persica Prupe.7G227200_v2.0.a1
pyrus_communis pycom02g04380
rosa_chinensis RchiOBHm_Chr2g0091051
rosa_laevigata RLG00000016171
rosa_multiflora Rmu_sc0005171.1_g000013
rosa_roxburghii Rroxscaffold_2G00150650
rosa_rugosa Rorug02G0011800 Rorug02G0011900
rosa_samantha Rh2AG058200 Rh2CG058800
rosa_wichuraiana Rw2G005100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 2 cut(s) 369, 874
AccB7I CCANNNNNTGG 1 cut(s) 1001
AciI CCGC 1 cut(s) 871
AclWI GGATC 3 cut(s) 224, 394, 448
AcoI YGGCCR 1 cut(s) 192
AcuI CTGAAG 2 cut(s) 225, 636
AcyI GRCGYC 2 cut(s) 29, 574
AfaI GTAC 4 cut(s) 371, 546, 695, 1025
AfiI CCNNNNNNNGG 3 cut(s) 208, 731, 1001
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 7 cut(s) 92, 365, 425, 436, 461, 539, 713
AjnI CCWGG 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 6 cut(s) 55, 440, 451, 893, 952, 1036
AluI AGCT 6 cut(s) 55, 440, 451, 893, 952, 1036
Alw21I GWGCWC 3 cut(s) 57, 559, 608
Alw26I GTCTC 2 cut(s) 40, 62
AlwI GGATC 3 cut(s) 224, 394, 448
AoxI GGCC 7 cut(s) 104, 192, 398, 429, 532, 676, 739
Asp718I GGTACC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 3 cut(s) 174, 223, 827
AxyI CCTNAGG 1 cut(s) 963
BaeGI GKGCMC 1 cut(s) 877
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 2 cut(s) 369, 874
BanII GRGCYC 1 cut(s) 57
BauI CACGAG 1 cut(s) 697
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 3 cut(s) 57, 559, 608
BccI CCATC 3 cut(s) 249, 382, 1062
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 144
BclI TGATCA 1 cut(s) 763
BcoDI GTCTC 2 cut(s) 40, 62
BmcAI AGTACT 1 cut(s) 546
Bme1390I CCNGG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 2 cut(s) 371, 876
BmrFI CCNGG 1 cut(s) 144
BmrI ACTGGG 1 cut(s) 949
BmsI GCATC 1 cut(s) 694
BmuI ACTGGG 1 cut(s) 949
BoxI GACNNNNGTC 2 cut(s) 14, 32
BpiI GAAGAC 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 41
BsaBI GATNNNNATC 2 cut(s) 151, 499
BsaHI GRCGYC 2 cut(s) 29, 574
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 185, 661, 879
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 731, 1001
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 944
Bse21I CCTNAGG 1 cut(s) 963
Bse3DI GCAATG 1 cut(s) 155
Bse8I GATNNNNATC 2 cut(s) 151, 499
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 185, 661, 879
BseGI GGATG 3 cut(s) 260, 532, 949
BseJI GATNNNNATC 2 cut(s) 151, 499
BseLI CCNNNNNNNGG 3 cut(s) 208, 731, 1001
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 225, 954
BseNI ACTGG 1 cut(s) 944
BseRI GAGGAG 1 cut(s) 1028
BseSI GKGCMC 1 cut(s) 877
BshFI GGCC 7 cut(s) 106, 194, 400, 431, 534, 678, 741
BshNI GGYRCC 2 cut(s) 369, 874
BsiHKAI GWGCWC 3 cut(s) 57, 559, 608
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 3 cut(s) 208, 731, 1001
BsmAI GTCTC 2 cut(s) 40, 62
BsmBI CGTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 7 cut(s) 106, 194, 400, 431, 534, 678, 741
Bso31I GGTCTC 1 cut(s) 40
Bsp1286I GDGCHC 4 cut(s) 57, 559, 608, 877
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 6 cut(s) 229, 386, 453, 763, 768, 904
Bsp19I CCATGG 1 cut(s) 661
BspACI CCGC 1 cut(s) 871
BspANI GGCC 7 cut(s) 106, 194, 400, 431, 534, 678, 741
BspCNI CTCAG 2 cut(s) 226, 955
BspLI GGNNCC 2 cut(s) 371, 876
BspPI GGATC 3 cut(s) 224, 394, 448
BspT107I GGYRCC 2 cut(s) 369, 874
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 31
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 1 cut(s) 944
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 3 cut(s) 185, 661, 879
BssMI GATC 6 cut(s) 229, 386, 453, 763, 768, 904
BssNI GRCGYC 2 cut(s) 29, 574
BssSI CACGAG 1 cut(s) 697
BssT1I CCWWGG 3 cut(s) 185, 661, 879
Bst2BI CACGAG 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 16, 488
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 2 cut(s) 29, 574
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 3 cut(s) 192, 739, 873
BstDEI CTNAG 2 cut(s) 234, 963
BstDSI CCRYGG 1 cut(s) 661
BstF5I GGATG 3 cut(s) 260, 532, 949
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 6 cut(s) 232, 389, 456, 766, 771, 907
BstMAI GTCTC 2 cut(s) 40, 62
BstMBI GATC 6 cut(s) 229, 386, 453, 763, 768, 904
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 634
BstPAI GACNNNNGTC 2 cut(s) 14, 32
BstSCI CCNGG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 877
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 963
BsuRI GGCC 7 cut(s) 106, 194, 400, 431, 534, 678, 741
BtgI CCRYGG 1 cut(s) 661
BtsCI GGATG 3 cut(s) 260, 532, 949
BtsIMutI CAGTG 2 cut(s) 132, 484
Cac8I GCNNGC 3 cut(s) 192, 739, 873
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 104
CseI GACGC 2 cut(s) 37, 563
Csp6I GTAC 4 cut(s) 370, 545, 694, 1024
CviAII CATG 6 cut(s) 263, 407, 631, 662, 691, 720
CviQI GTAC 4 cut(s) 370, 545, 694, 1024
DdeI CTNAG 2 cut(s) 234, 963
DpnI GATC 6 cut(s) 231, 388, 455, 765, 770, 906
DpnII GATC 6 cut(s) 229, 386, 453, 763, 768, 904
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 3 cut(s) 185, 661, 879
Eco147I AGGCCT 2 cut(s) 534, 678
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 225, 636
Eco81I CCTNAGG 1 cut(s) 963
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 3 cut(s) 185, 661, 879
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 3 cut(s) 185, 661, 879
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 6 cut(s) 266, 410, 634, 665, 694, 723
FalI AAGNNNNNCTT 4 cut(s) 453, 485, 941, 973
FaqI GGGAC 1 cut(s) 2
FatI CATG 6 cut(s) 262, 406, 630, 661, 690, 719
FauI CCCGC 1 cut(s) 864
FbaI TGATCA 1 cut(s) 763
FokI GGATG 3 cut(s) 267, 539, 956
FriOI GRGCYC 1 cut(s) 57
GlaI GCGC 1 cut(s) 161
HaeIII GGCC 7 cut(s) 106, 194, 400, 431, 534, 678, 741
HapII CCGG 1 cut(s) 32
HgaI GACGC 2 cut(s) 37, 563
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 2 cut(s) 29, 574
Hin1II CATG 6 cut(s) 266, 410, 634, 665, 694, 723
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 891
HinfI GANTC 3 cut(s) 121, 259, 281
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 174, 223, 827
Hpy166II GTNNAC 3 cut(s) 668, 696, 1026
Hpy188I TCNGA 3 cut(s) 27, 52, 768
Hpy188III TCNNGA 5 cut(s) 233, 285, 837, 902, 962
Hpy8I GTNNAC 3 cut(s) 668, 696, 1026
HpyAV CCTTC 5 cut(s) 58, 89, 211, 442, 524
HpyCH4III ACNGT 2 cut(s) 16, 488
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 320, 854, 931
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 2 cut(s) 234, 963
HpySE526I ACGT 1 cut(s) 175
Hsp92I GRCGYC 2 cut(s) 29, 574
Hsp92II CATG 6 cut(s) 266, 410, 634, 665, 694, 723
HspAI GCGC 1 cut(s) 160
KpnI GGTACC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 6 cut(s) 229, 386, 453, 763, 768, 904
LmnI GCTCC 2 cut(s) 52, 1041
LweI GCATC 1 cut(s) 694
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 2 cut(s) 130, 180
MalI GATC 6 cut(s) 231, 388, 455, 765, 770, 906
MboI GATC 6 cut(s) 229, 386, 453, 763, 768, 904
MboII GAAGA 9 cut(s) 97, 104, 161, 218, 226, 239, 627, 629, 803
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 4 cut(s) 57, 559, 608, 877
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 4 cut(s) 247, 360, 410, 810
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 1 cut(s) 268
MmeI TCCRAC 2 cut(s) 258, 445
MnlI CCTC 9 cut(s) 75, 202, 346, 517, 833, 870, 880, 958, 1049
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
MseI TTAA 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 194
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 437
NcoI CCATGG 1 cut(s) 661
NdeII GATC 6 cut(s) 229, 386, 453, 763, 768, 904
NlaIII CATG 6 cut(s) 266, 410, 634, 665, 694, 723
NlaIV GGNNCC 2 cut(s) 371, 876
NmuCI GTSAC 2 cut(s) 130, 180
NspI RCATGY 1 cut(s) 634
PceI AGGCCT 2 cut(s) 534, 678
PciI ACATGT 1 cut(s) 630
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PfeI GAWTC 2 cut(s) 121, 281
PflMI CCANNNNNTGG 1 cut(s) 1001
PfoI TCCNGGA 1 cut(s) 142
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PscI ACATGT 1 cut(s) 630
PshAI GACNNNNGTC 2 cut(s) 14, 32
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 371, 876
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 4 cut(s) 371, 546, 695, 1025
RsaNI GTAC 4 cut(s) 370, 545, 694, 1024
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 6 cut(s) 229, 386, 453, 763, 768, 904
Sau96I GGNCC 1 cut(s) 104
ScaI AGTACT 1 cut(s) 546
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 4 cut(s) 57, 559, 608, 877
SfaNI GCATC 1 cut(s) 694
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 4 cut(s) 247, 360, 410, 810
SseBI AGGCCT 2 cut(s) 534, 678
SsiI CCGC 1 cut(s) 871
SspI AATATT 1 cut(s) 1049
SstI GAGCTC 1 cut(s) 57
StuI AGGCCT 2 cut(s) 534, 678
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 3 cut(s) 185, 661, 879
TaaI ACNGT 2 cut(s) 16, 488
TaiI ACGT 1 cut(s) 178
TaqI TCGA 4 cut(s) 80, 225, 911, 1041
TasI AATT 4 cut(s) 247, 360, 410, 810
TatI WGTACW 3 cut(s) 544, 693, 1023
TfiI GAWTC 2 cut(s) 121, 281
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 2 cut(s) 139, 491
TseFI GTSAC 2 cut(s) 130, 180
Tsp45I GTSAC 2 cut(s) 130, 180
TspDTI ATGAA 5 cut(s) 33, 141, 423, 543, 810
TspGWI ACGGA 2 cut(s) 86, 118
TspRI CASTG 2 cut(s) 139, 491
Van91I CCANNNNNTGG 1 cut(s) 1001
XceI RCATGY 1 cut(s) 634
ZrmI AGTACT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.