Rorug02G0011800

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011025
Physical Location & Seq
Reverse (-)
1051024 .. 1054525
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0011800.1

Sequence Viewer

Length: 435 bp
ATGTCAGGAGATGAAGTTGAGGTTCCCGTTCCTGCTGAGCCTGTAGCTGCTGCTCCAGCTCTAGGTGAGCCCATGGACCTCATGACAGCGTTGCAACTTGTGCTTAGGAAGTCATTGGCTCATGGTGGGCTTACACGGGGCCTGCATGAAGCTGCCAAGGTCATTGAGAAGCATGCTGCACAGCTTTGCGTTTTGGCTGAGGACTGCGACCAGGCTGATTATGTTAAGCTGGTGAAGTCACTGTGTGCAGAGCATAATGTTAACCTAATGACAATTCCTAGTGCTAAAACTCTTGGAGAATGGTCTGGGCTTTGCAAGATTGATTCTGAAGGGAAGGCAAGAAAGGTCGTTGGTTGCTCTTGCGTTGTTGTCAAGGATTTTGGTGAAGATACAGAAGGCCTTCATGTTGTTCAGGAGTACGTGAAGTCCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

144

Amino Acids

15.35

Weight (kDa)

5.3

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 30 - 123 1.9e-26 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011025)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13400 AT4G13400
fragaria_vesca FvH4_1g05370 FvH4_1g05370 FvH4_1g05370 FvH4_1g05370 FvH4_1g05370 FvH4_1g05370
malus_domestica MD02G1062200.v1.1
prunus_persica Prupe.7G227200_v2.0.a1
pyrus_communis pycom02g04380
rosa_chinensis RchiOBHm_Chr2g0091051
rosa_laevigata RLG00000016171
rosa_multiflora Rmu_sc0005171.1_g000013
rosa_roxburghii Rroxscaffold_2G00150650
rosa_rugosa Rorug02G0011800 Rorug02G0011900
rosa_samantha Rh2AG058200 Rh2CG058800
rosa_wichuraiana Rw2G005100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 348
AdeI CACNNNGTG 1 cut(s) 245
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 62
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 5 cut(s) 47, 59, 152, 184, 229
AluI AGCT 5 cut(s) 47, 59, 152, 184, 229
AoxI GGCC 2 cut(s) 139, 397
ApeKI GCWGC 4 cut(s) 47, 50, 152, 176
Asp700I GAANNNNTTC 1 cut(s) 399
AspS9I GGNCC 2 cut(s) 76, 139
AsuHPI GGTGA 3 cut(s) 77, 244, 395
AvaII GGWCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 72
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 4 cut(s) 34, 37, 139, 163
BciT130I CCWGG 1 cut(s) 212
BfaI CTAG 2 cut(s) 62, 279
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 4 cut(s) 48, 51, 153, 177
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 4 cut(s) 49, 52, 154, 178
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 76, 139
BmiI GGNNCC 2 cut(s) 24, 140
BmrFI CCNGG 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 39
Bpu10I CCTNAGC 2 cut(s) 104, 198
Bpu1102I GCTNAGC 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 421
BsaJI CCNNGG 2 cut(s) 72, 156
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 72, 156
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 27, 189
BseXI GCAGC 4 cut(s) 34, 37, 139, 163
BsgI GTGCAG 2 cut(s) 162, 267
BshFI GGCC 2 cut(s) 141, 399
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 2 cut(s) 141, 399
Bsp1286I GDGCHC 1 cut(s) 72
Bsp1720I GCTNAGC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 72
BspANI GGCC 2 cut(s) 141, 399
BspCNI CTCAG 2 cut(s) 28, 190
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 24, 140
BssECI CCNNGG 2 cut(s) 72, 156
BssT1I CCWWGG 2 cut(s) 72, 156
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 421
BstC8I GCNNGC 2 cut(s) 143, 174
BstDEI CTNAG 3 cut(s) 36, 104, 198
BstDSI CCRYGG 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 56, 100
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 4 cut(s) 34, 37, 139, 163
BsuRI GGCC 2 cut(s) 141, 399
BtgI CCRYGG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 2 cut(s) 143, 174
CciI TCATGA 1 cut(s) 81
Cfr13I GGNCC 2 cut(s) 76, 139
Csp6I GTAC 1 cut(s) 418
CviAII CATG 6 cut(s) 73, 82, 122, 146, 173, 404
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 3 cut(s) 36, 104, 198
DraIII CACNNNGTG 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 72, 156
Eco147I AGGCCT 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 2 cut(s) 72, 156
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 72, 156
FaeI CATG 6 cut(s) 76, 85, 125, 149, 176, 407
FaiI YATR 8 cut(s) 74, 83, 123, 147, 174, 222, 255, 405
FaqI GGGAC 1 cut(s) 412
FatI CATG 6 cut(s) 72, 81, 121, 145, 172, 403
Fnu4HI GCNGC 4 cut(s) 48, 51, 153, 177
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 4 cut(s) 48, 51, 153, 177
FspBI CTAG 2 cut(s) 62, 279
GluI GCNGC 4 cut(s) 48, 51, 153, 177
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 141, 399
Hin1II CATG 6 cut(s) 76, 85, 125, 149, 176, 407
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 1 cut(s) 323
HpaI GTTAAC 1 cut(s) 262
HphI GGTGA 3 cut(s) 77, 244, 395
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 3 cut(s) 6, 82, 413
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 4 cut(s) 323, 328, 389, 410
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 5 cut(s) 94, 145, 179, 248, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 100
HpyF3I CTNAG 3 cut(s) 36, 104, 198
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 6 cut(s) 76, 85, 125, 149, 176, 407
KspAI GTTAAC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 9 cut(s) 45, 54, 69, 155, 197, 215, 224, 291, 398
Lsp1109I GCAGC 4 cut(s) 34, 37, 139, 163
MaeI CTAG 2 cut(s) 62, 279
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 237
MboII GAAGA 1 cut(s) 398
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 273
MnlI CCTC 3 cut(s) 13, 89, 193
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 3 cut(s) 225, 261, 433
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 56, 100
NcoI CCATGG 1 cut(s) 72
NlaIII CATG 6 cut(s) 76, 85, 125, 149, 176, 407
NlaIV GGNNCC 2 cut(s) 24, 140
NmuCI GTSAC 1 cut(s) 237
NspI RCATGY 1 cut(s) 176
PaeI GCATGC 1 cut(s) 176
PagI TCATGA 1 cut(s) 81
PceI AGGCCT 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 4 cut(s) 49, 52, 154, 178
Ppu21I YACGTR 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 24, 140
PspPI GGNCC 2 cut(s) 76, 139
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SaqAI TTAA 3 cut(s) 225, 261, 433
SatI GCNGC 4 cut(s) 48, 51, 153, 177
Sau96I GGNCC 2 cut(s) 76, 139
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 76
SphI GCATGC 1 cut(s) 176
Sse9I AATT 1 cut(s) 273
SseBI AGGCCT 1 cut(s) 399
SspMI CTAG 2 cut(s) 62, 279
StuI AGGCCT 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 2 cut(s) 72, 156
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 1 cut(s) 423
TasI AATT 1 cut(s) 273
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 3 cut(s) 225, 261, 433
Tru9I TTAA 3 cut(s) 225, 261, 433
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 237
TseI GCWGC 4 cut(s) 47, 50, 152, 176
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 3 cut(s) 27, 162, 392
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 76
XceI RCATGY 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 2 cut(s) 62, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.