Prupe.7G227200_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011025
Physical Location & Seq
Reverse (-)
20083187 .. 20087722
4536 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G227200.1

Sequence Viewer

Length: 1077 bp
ATGCATTCTTCCTCCGAGAATACCGTCCCCACCGTCACGCCAGTCACCATATCGTACTCGGAGCTCAAAGACAAGAACACGGACTTGTCATTGAAGATTGAAGAAGGCTTTGGACCTAATGGGTTAGGAATCTTATCAATCACCGATGTTCCGGAATATTCTTCCTTGCGCCGAAATCTTCTACACCTGTCACCTAGATTAGCCAATCTGCCGGAAGAGGTGAAGAAGGAACTCGAAGATCCTGATAGTAGGTACAATTTTGGATGGAGTCATGGAAAAGAGAAGCTGGAATCTGGAAAGCCAGATACGTTAAAAGGCTCTTTTTATGCAAATCCAATGTTAGATAGGCCTACAACAGATGAATATCTACTTCAAAGGTATCCATCATACTGTGGATCAAATATATGGCCTAATAGTGAATTGCCAGAACTTGAAGTTGCCTTCAAAGCTCTTGGGAAGCTGATCCTTGGAGTTGGGCTTATGGTGGCATTTCACTGTGACAGATATGTGTCAAAAGCAATCAAAATGAGTGAGGATGAAGGCCTTGAACAAATACTTTTTCGTTCTCGGTGTCATAAAGGGCGTCTACTTTATTACTTTTCCACAAAAGAGAGTAATTCTACCGAAGATAATAAAGACATGTCTTCTTGGTGTGGATGGCATACAGACCATGGTTCACTTACAGGACTGACCTGTGCCATGTTTACGAGAGATGCTGTTGAAATACCATGTCCTGATAGTGGAGCTGGCCTTTATATCAGGACGCGAACAGATCAGATTGTCAAAGTTGTCTTTGGAGAAGATGCAATAGCATACCAAATTGGCGAAACCACTGAAATTCTGTCAAGAGGTTATCTTTGTGCGACACCTCATTGTGTCCGGGCACCCAAGGGAGAGGACGCTTGCAGTCTTGATCGTTCAACATTTGCATTATTTATGCAACCTGACTGGGATGAGAAGCTTAATTTTCCAGAGGAGATTCATATCCATAAAGAGTTGATTTCACCGAATGGTGCTCTTACCTTTGGAGAGTACACAGAGAAGCTCCTCGACAAATATTACCACCAGAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

359

Amino Acids

40.42

Weight (kDa)

5.31

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011025)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13400 AT4G13400
fragaria_vesca FvH4_1g05370 FvH4_1g05370 FvH4_1g05370 FvH4_1g05370 FvH4_1g05370 FvH4_1g05370
malus_domestica MD02G1062200.v1.1
prunus_persica Prupe.7G227200_v2.0.a1
pyrus_communis pycom02g04380
rosa_chinensis RchiOBHm_Chr2g0091051
rosa_laevigata RLG00000016171
rosa_multiflora Rmu_sc0005171.1_g000013
rosa_roxburghii Rroxscaffold_2G00150650
rosa_rugosa Rorug02G0011800 Rorug02G0011900
rosa_samantha Rh2AG058200 Rh2CG058800
rosa_wichuraiana Rw2G005100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 883
AccI GTMKAC 1 cut(s) 586
AccII CGCG 1 cut(s) 766
AccIII TCCGGA 1 cut(s) 151
AclWI GGATC 3 cut(s) 233, 403, 457
AcsI RAATTY 1 cut(s) 837
AcyI GRCGYC 1 cut(s) 583
AfaI GTAC 3 cut(s) 56, 254, 1034
AfiI CCNNNNNNNGG 1 cut(s) 740
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 8 cut(s) 94, 101, 374, 434, 445, 548, 722, 921
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AluBI AGCT 7 cut(s) 64, 286, 449, 460, 746, 961, 1045
AluI AGCT 7 cut(s) 64, 286, 449, 460, 746, 961, 1045
Alw21I GWGCWC 2 cut(s) 66, 1018
AlwI GGATC 3 cut(s) 233, 403, 457
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 4 cut(s) 347, 407, 541, 748
ApoI RAATTY 1 cut(s) 837
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 881
AsuHPI GGTGA 5 cut(s) 37, 133, 183, 232, 996
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 886
BanI GGYRCC 1 cut(s) 883
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 2 cut(s) 66, 1018
BccI CCATC 3 cut(s) 258, 391, 651
BciVI GTATCC 1 cut(s) 390
BcnI CCSGG 1 cut(s) 881
BfaI CTAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 881
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 885
BmrFI CCNGG 1 cut(s) 881
BmrI ACTGGG 1 cut(s) 958
BmsI GCATC 2 cut(s) 703, 793
BmuI ACTGGG 1 cut(s) 958
BpiI GAAGAC 1 cut(s) 636
BpuMI CCSGG 1 cut(s) 881
BsaBI GATNNNNATC 2 cut(s) 363, 983
BsaHI GRCGYC 1 cut(s) 583
BsaJI CCNNGG 3 cut(s) 466, 670, 888
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse1I ACTGG 2 cut(s) 41, 953
Bse8I GATNNNNATC 2 cut(s) 363, 983
BseAI TCCGGA 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 466, 670, 888
BseGI GGATG 4 cut(s) 269, 541, 662, 958
BseJI GATNNNNATC 2 cut(s) 363, 983
BseLI CCNNNNNNNGG 1 cut(s) 740
BseNI ACTGG 2 cut(s) 41, 953
BseRI GAGGAG 2 cut(s) 989, 1037
BseSI GKGCMC 1 cut(s) 886
Bsh1236I CGCG 1 cut(s) 766
BshFI GGCC 4 cut(s) 349, 409, 543, 750
BshNI GGYRCC 1 cut(s) 883
BsiHKAI GWGCWC 2 cut(s) 66, 1018
BsiSI CCGG 3 cut(s) 152, 212, 880
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 740
BsmFI GGGAC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 4 cut(s) 349, 409, 543, 750
Bsp1286I GDGCHC 3 cut(s) 66, 886, 1018
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 5 cut(s) 238, 395, 462, 772, 913
Bsp19I CCATGG 1 cut(s) 670
BspANI GGCC 4 cut(s) 349, 409, 543, 750
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 766
BspLI GGNNCC 1 cut(s) 885
BspPI GGATC 3 cut(s) 233, 403, 457
BspT107I GGYRCC 1 cut(s) 883
BsrI ACTGG 2 cut(s) 41, 953
BssECI CCNNGG 3 cut(s) 466, 670, 888
BssMI GATC 5 cut(s) 238, 395, 462, 772, 913
BssNI GRCGYC 1 cut(s) 583
BssT1I CCWWGG 3 cut(s) 466, 670, 888
Bst4CI ACNGT 4 cut(s) 25, 34, 392, 497
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 748, 904
BstDSI CCRYGG 1 cut(s) 670
BstF5I GGATG 4 cut(s) 269, 541, 662, 958
BstFNI CGCG 1 cut(s) 766
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 5 cut(s) 241, 398, 465, 775, 916
BstMBI GATC 5 cut(s) 238, 395, 462, 772, 913
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 643
BstSCI CCNGG 1 cut(s) 879
BstSLI GKGCMC 1 cut(s) 886
BstUI CGCG 1 cut(s) 766
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuI GTATCC 1 cut(s) 390
BsuRI GGCC 4 cut(s) 349, 409, 543, 750
BtgI CCRYGG 1 cut(s) 670
BtsCI GGATG 4 cut(s) 269, 541, 662, 958
BtsIMutI CAGTG 2 cut(s) 493, 831
Cac8I GCNNGC 2 cut(s) 748, 904
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 113
CseI GACGC 3 cut(s) 572, 772, 908
Csp6I GTAC 3 cut(s) 55, 253, 1033
CviAII CATG 5 cut(s) 272, 640, 671, 700, 729
CviQI GTAC 3 cut(s) 55, 253, 1033
DpnI GATC 5 cut(s) 240, 397, 464, 774, 915
DpnII GATC 5 cut(s) 238, 395, 462, 772, 913
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 466, 670, 888
Eco147I AGGCCT 2 cut(s) 349, 543
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoT14I CCWWGG 3 cut(s) 466, 670, 888
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 3 cut(s) 466, 670, 888
FaeI CATG 5 cut(s) 275, 643, 674, 703, 732
FaqI GGGAC 1 cut(s) 11
FatI CATG 5 cut(s) 271, 639, 670, 699, 728
FblI GTMKAC 1 cut(s) 586
FokI GGATG 4 cut(s) 276, 548, 669, 965
FriOI GRGCYC 1 cut(s) 66
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 170
HaeIII GGCC 4 cut(s) 349, 409, 543, 750
HapII CCGG 3 cut(s) 152, 212, 880
HgaI GACGC 3 cut(s) 572, 772, 908
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 583
Hin1II CATG 5 cut(s) 275, 643, 674, 703, 732
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 959
HinfI GANTC 4 cut(s) 129, 268, 290, 979
HpaII CCGG 3 cut(s) 152, 212, 880
HphI GGTGA 5 cut(s) 37, 133, 183, 232, 996
Hpy166II GTNNAC 4 cut(s) 587, 677, 705, 1035
Hpy188I TCNGA 3 cut(s) 16, 61, 777
Hpy188III TCNNGA 8 cut(s) 152, 242, 294, 734, 760, 846, 911, 971
Hpy8I GTNNAC 4 cut(s) 587, 677, 705, 1035
HpyAV CCTTC 4 cut(s) 98, 220, 451, 533
HpyCH4III ACNGT 4 cut(s) 25, 34, 392, 497
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 6 cut(s) 4, 329, 806, 906, 929, 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 1 cut(s) 583
Hsp92II CATG 5 cut(s) 275, 643, 674, 703, 732
HspAI GCGC 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 151
Kzo9I GATC 5 cut(s) 238, 395, 462, 772, 913
LmnI GCTCC 3 cut(s) 61, 743, 1050
LweI GCATC 2 cut(s) 703, 793
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 4 cut(s) 34, 43, 189, 497
MalI GATC 5 cut(s) 240, 397, 464, 774, 915
MboI GATC 5 cut(s) 238, 395, 462, 772, 913
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 3 cut(s) 66, 886, 1018
MluCI AATT 6 cut(s) 256, 419, 616, 819, 837, 964
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 8 cut(s) 22, 211, 526, 842, 879, 889, 967, 1058
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 151
MseI TTAA 2 cut(s) 311, 963
MspI CCGG 3 cut(s) 152, 212, 880
MspR9I CCNGG 1 cut(s) 881
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 1 cut(s) 766
MwoI GCNNNNNNNGC 1 cut(s) 446
NciI CCSGG 1 cut(s) 881
NcoI CCATGG 1 cut(s) 670
NdeII GATC 5 cut(s) 238, 395, 462, 772, 913
NlaIII CATG 5 cut(s) 275, 643, 674, 703, 732
NlaIV GGNNCC 1 cut(s) 885
NmuCI GTSAC 4 cut(s) 34, 43, 189, 497
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 643
PceI AGGCCT 2 cut(s) 349, 543
PciI ACATGT 1 cut(s) 639
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 3 cut(s) 129, 290, 979
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PscI ACATGT 1 cut(s) 639
Psp124BI GAGCTC 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 885
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 3 cut(s) 56, 254, 1034
RsaNI GTAC 3 cut(s) 55, 253, 1033
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 311, 963
Sau3AI GATC 5 cut(s) 238, 395, 462, 772, 913
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 881
SduI GDGCHC 3 cut(s) 66, 886, 1018
SfaNI GCATC 2 cut(s) 703, 793
SinI GGWCC 1 cut(s) 113
Sse9I AATT 6 cut(s) 256, 419, 616, 819, 837, 964
SseBI AGGCCT 2 cut(s) 349, 543
SspI AATATT 2 cut(s) 158, 1058
SspMI CTAG 1 cut(s) 195
SstI GAGCTC 1 cut(s) 66
StuI AGGCCT 2 cut(s) 349, 543
StyD4I CCNGG 1 cut(s) 879
StyI CCWWGG 3 cut(s) 466, 670, 888
TaaI ACNGT 4 cut(s) 25, 34, 392, 497
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 234, 1050
TasI AATT 6 cut(s) 256, 419, 616, 819, 837, 964
TatI WGTACW 1 cut(s) 1032
TfiI GAWTC 3 cut(s) 129, 290, 979
Tru1I TTAA 2 cut(s) 311, 963
Tru9I TTAA 2 cut(s) 311, 963
TscAI CASTG 2 cut(s) 500, 838
TseFI GTSAC 4 cut(s) 34, 43, 189, 497
Tsp45I GTSAC 4 cut(s) 34, 43, 189, 497
TspDTI ATGAA 3 cut(s) 375, 552, 971
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 500, 838
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 837
XceI RCATGY 1 cut(s) 643
XmiI GTMKAC 1 cut(s) 586
XspI CTAG 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.