FvH4_1g05450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014631
Physical Location & Seq
Forward (+)
2880328 .. 2883884
3557 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05450.t1

Sequence Viewer

Length: 936 bp
ATGGCGGGAGGCGGCGGGAGCAGGAAGGACGAGTCGGTGGTTCTGAACAGCACCAACGTGTTTGCGGCGCTGGGGAGCTTGAAGAAGAAGAAGAAGTCAAAGACCGGCAAGAGCGGCGGCGGCGGTCAGGCCGAGCCGGAGAAGGAGGTCTATTGGGCGCCGGCGCCGCTCACGGTCAAGTCATGGGCCGATGTCGATGACGAGGACGATGACGACTACTTCGCTACTACTGCGCCGCCGGAATTGGGCTGGGCCGGCGGTGAATCCAAGGAGGAGAAGGAGAGTGAGATGGAGGCTGAGCATGTGGAGGTCGGCGATATGTTAAGTGACAGTGAAGAGGAAGGTGTTGATGATGATGCGGACGAGAATCATGAGAACGAACTTGAAGTACCAGTTGAGACTGAGACAGGTAAGAAACTAGCTGAAGCTTCTAAGGATACAGAAAGGCAGCTTTCTAAGAAGGAACTGAAGAAAAAAGGGCTTGAAGAACTGGATGCAGTTCTTGCTGAGCTAGGACTTGGCAAAAATGAGACCAGTGGCCAGGATGAATCTAGAGATGTTGCCCAAGAGAAGAAAGTAGAGAACCTAAATGGTGACTTAGACAAGAAGGAAACTGCTGGGGAGAGCAAAAGTGCCAAAAAGAAGAAAAAGAAGGATAAGTCATTGAAGGAATCTAGAGAATCCCAGGACCAGCCTGATGTCACTGGAAATGCAGCAGCAGAGGGAACCACTGAAACTGAGAAGGTAGAAGATACATCAACTGGTGATGTTAAAGAGCGGCTAAAGAAAGTGGCATCTATGAAGAAGAAGAAATCAAGTAAGGAAATGGATGCTGCAGCCCGAGCTGCTGCGAGTGAAGCTGCTGCCAGGAATGCTAGGCTAGCTTCAGCAAAGAAAAAAGAGAAGAATCACTACAATCAGCAGCCCGTGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

33.66

Weight (kDa)

5.01

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014631)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g05450
malus_domestica MD02G1062600.v1.1 MD15G1190400.v1.1
prunus_persica Prupe.7G226700_v2.0.a1
pyrus_communis pycom02g04330 pycom15g17060
rosa_chinensis RchiOBHm_Chr2g0091121
rosa_laevigata RLG00000016181
rosa_multiflora Rmu_sc0004851.1_g000008
rosa_roxburghii Rroxscaffold_2G00150530
rosa_rugosa Rorug02G0013100 Rorug02G0013200
rosa_samantha Rh2AG059400 Rh2BG057800 Rh2CG059600 Rh2DG058700
rosa_wichuraiana Rw2G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 157, 163
AccBSI CCGCTC 3 cut(s) 114, 169, 778
AcoI YGGCCR 1 cut(s) 538
AcuI CTGAAG 3 cut(s) 444, 488, 870
AcyI GRCGYC 2 cut(s) 158, 164
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 4 cut(s) 82, 386, 485, 667
AjnI CCWGG 3 cut(s) 540, 684, 866
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 8 cut(s) 78, 422, 428, 451, 511, 845, 860, 884
AluI AGCT 8 cut(s) 78, 422, 428, 451, 511, 845, 860, 884
Alw26I GTCTC 3 cut(s) 392, 398, 524
Ama87I CYCGRG 1 cut(s) 840
AoxI GGCC 4 cut(s) 129, 186, 252, 538
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspLEI GCGC 4 cut(s) 70, 160, 166, 235
AspS9I GGNCC 3 cut(s) 186, 252, 688
AsuHPI GGTGA 3 cut(s) 272, 605, 776
AsuNHI GCTAGC 1 cut(s) 880
AvaI CYCGRG 1 cut(s) 840
AvaII GGWCC 1 cut(s) 688
BalI TGGCCA 1 cut(s) 540
BanI GGYRCC 2 cut(s) 157, 163
BarI GAAGNNNNNNTAC 2 cut(s) 896, 928
BbvI GCAGC 9 cut(s) 460, 725, 728, 820, 832, 835, 847, 848, 850
BccI CCATC 1 cut(s) 283
BciT130I CCWGG 3 cut(s) 542, 686, 868
BciVI GTATCC 1 cut(s) 430
BcoDI GTCTC 3 cut(s) 392, 398, 524
BfaI CTAG 6 cut(s) 419, 512, 552, 675, 876, 881
BfmI CTRYAG 1 cut(s) 834
BfoI RGCGCY 3 cut(s) 71, 161, 167
BfuI GTATCC 1 cut(s) 430
BlpI GCTNAGC 2 cut(s) 297, 507
Bme1390I CCNGG 3 cut(s) 542, 686, 868
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 3 cut(s) 186, 252, 688
BmiI GGNNCC 3 cut(s) 159, 165, 727
BmrFI CCNGG 3 cut(s) 542, 686, 868
BmsI GCATC 4 cut(s) 346, 484, 803, 820
BmtI GCTAGC 1 cut(s) 884
Bpu1102I GCTNAGC 2 cut(s) 297, 507
BsaHI GRCGYC 2 cut(s) 158, 164
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 267, 684
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 3 cut(s) 104, 160, 254
Bse1I ACTGG 5 cut(s) 392, 495, 534, 709, 766
BseBI CCWGG 3 cut(s) 542, 686, 868
BseDI CCNNGG 2 cut(s) 267, 684
BseGI GGATG 3 cut(s) 499, 550, 835
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 4 cut(s) 288, 393, 498, 729
BseNI ACTGG 5 cut(s) 392, 495, 534, 709, 766
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 9 cut(s) 460, 725, 728, 820, 832, 835, 847, 848, 850
BseYI CCCAGC 3 cut(s) 70, 249, 617
BshFI GGCC 4 cut(s) 131, 188, 254, 540
BshNI GGYRCC 2 cut(s) 157, 163
BsiHKCI CYCGRG 1 cut(s) 840
BsiSI CCGG 5 cut(s) 105, 137, 161, 239, 255
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 3 cut(s) 392, 398, 524
BsmI GAATGC 1 cut(s) 877
BsnI GGCC 4 cut(s) 131, 188, 254, 540
Bso31I GGTCTC 1 cut(s) 524
BsoBI CYCGRG 1 cut(s) 840
Bsp1720I GCTNAGC 2 cut(s) 297, 507
BspANI GGCC 4 cut(s) 131, 188, 254, 540
BspCNI CTCAG 4 cut(s) 289, 394, 499, 730
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 159, 165, 727
BspMAI CTGCAG 1 cut(s) 838
BspOI GCTAGC 1 cut(s) 884
BspT107I GGYRCC 2 cut(s) 157, 163
BspTNI GGTCTC 1 cut(s) 524
BsrBI CCGCTC 3 cut(s) 114, 169, 778
BsrFI RCCGGY 3 cut(s) 104, 160, 254
BsrI ACTGG 5 cut(s) 392, 495, 534, 709, 766
BssAI RCCGGY 3 cut(s) 104, 160, 254
BssECI CCNNGG 2 cut(s) 267, 684
BssNI GRCGYC 2 cut(s) 158, 164
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 3 cut(s) 542, 686, 868
Bst4CI ACNGT 2 cut(s) 175, 332
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 2 cut(s) 158, 164
BstAPI GCANNNNNTGC 2 cut(s) 503, 928
BstC8I GCNNGC 3 cut(s) 162, 256, 882
BstDEI CTNAG 7 cut(s) 297, 402, 432, 456, 507, 598, 738
BstF5I GGATG 3 cut(s) 499, 550, 835
BstH2I RGCGCY 3 cut(s) 71, 161, 167
BstHHI GCGC 4 cut(s) 70, 160, 166, 235
BstMAI GTCTC 3 cut(s) 392, 398, 524
BstNI CCWGG 3 cut(s) 542, 686, 868
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 3 cut(s) 540, 684, 866
BstSFI CTRYAG 1 cut(s) 834
BstV1I GCAGC 9 cut(s) 460, 725, 728, 820, 832, 835, 847, 848, 850
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 4 cut(s) 131, 188, 254, 540
BtsCI GGATG 3 cut(s) 499, 550, 835
BtsIMutI CAGTG 4 cut(s) 337, 541, 702, 729
Cac8I GCNNGC 3 cut(s) 162, 256, 882
CciI TCATGA 1 cut(s) 370
CfoI GCGC 4 cut(s) 70, 160, 166, 235
Cfr10I RCCGGY 3 cut(s) 104, 160, 254
Cfr13I GGNCC 3 cut(s) 186, 252, 688
Csp6I GTAC 1 cut(s) 389
CviAII CATG 3 cut(s) 183, 302, 371
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 7 cut(s) 297, 402, 432, 456, 507, 598, 738
DinI GGCGCC 2 cut(s) 159, 165
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 688
Eco57I CTGAAG 3 cut(s) 444, 488, 870
Eco88I CYCGRG 1 cut(s) 840
EcoRII CCWGG 3 cut(s) 540, 684, 866
EcoT14I CCWWGG 1 cut(s) 267
EgeI GGCGCC 2 cut(s) 159, 165
EheI GGCGCC 2 cut(s) 159, 165
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 3 cut(s) 186, 305, 374
FaiI YATR 5 cut(s) 184, 303, 320, 372, 800
FatI CATG 3 cut(s) 182, 301, 370
FauI CCCGC 1 cut(s) 8
FokI GGATG 3 cut(s) 506, 557, 842
FspBI CTAG 6 cut(s) 419, 512, 552, 675, 876, 881
GlaI GCGC 4 cut(s) 69, 159, 165, 234
GsaI CCCAGC 3 cut(s) 74, 253, 621
HaeII RGCGCY 3 cut(s) 71, 161, 167
HaeIII GGCC 4 cut(s) 131, 188, 254, 540
HapII CCGG 5 cut(s) 105, 137, 161, 239, 255
HhaI GCGC 4 cut(s) 70, 160, 166, 235
Hin1I GRCGYC 2 cut(s) 158, 164
Hin1II CATG 3 cut(s) 186, 305, 374
Hin6I GCGC 4 cut(s) 68, 158, 164, 233
HinP1I GCGC 4 cut(s) 68, 158, 164, 233
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 7 cut(s) 32, 263, 367, 548, 671, 680, 907
HpaII CCGG 5 cut(s) 105, 137, 161, 239, 255
HphI GGTGA 3 cut(s) 272, 605, 776
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 371, 552, 675
HpyAV CCTTC 9 cut(s) 19, 136, 271, 335, 454, 601, 646, 661, 736
HpyCH4III ACNGT 2 cut(s) 175, 332
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 497, 713, 836
HpyF3I CTNAG 7 cut(s) 297, 402, 432, 456, 507, 598, 738
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 2 cut(s) 158, 164
Hsp92II CATG 3 cut(s) 186, 305, 374
HspAI GCGC 4 cut(s) 68, 158, 164, 233
KasI GGCGCC 2 cut(s) 157, 163
KroI GCCGGC 2 cut(s) 160, 254
KroNI GCCGGC 2 cut(s) 162, 256
LmnI GCTCC 2 cut(s) 18, 75
Lsp1109I GCAGC 9 cut(s) 460, 725, 728, 820, 832, 835, 847, 848, 850
LweI GCATC 4 cut(s) 346, 484, 803, 820
MaeI CTAG 6 cut(s) 419, 512, 552, 675, 876, 881
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 326, 593, 700
MbiI CCGCTC 3 cut(s) 114, 169, 778
MlsI TGGCCA 1 cut(s) 540
MluCI AATT 1 cut(s) 242
MluNI TGGCCA 1 cut(s) 540
Mly113I GGCGCC 2 cut(s) 158, 164
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 7 cut(s) 139, 196, 265, 286, 301, 331, 715
Mox20I TGGCCA 1 cut(s) 540
MreI CGCCGGCG 1 cut(s) 160
MroNI GCCGGC 2 cut(s) 160, 254
MscI TGGCCA 1 cut(s) 540
MseI TTAA 2 cut(s) 323, 771
MslI CAYNNNNRTG 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 540
MspI CCGG 5 cut(s) 105, 137, 161, 239, 255
MspR9I CCNGG 3 cut(s) 542, 686, 868
Mva1269I GAATGC 1 cut(s) 877
MvaI CCWGG 3 cut(s) 542, 686, 868
NaeI GCCGGC 2 cut(s) 162, 256
NarI GGCGCC 2 cut(s) 158, 164
NgoMIV GCCGGC 2 cut(s) 160, 254
NheI GCTAGC 1 cut(s) 880
NlaIII CATG 3 cut(s) 186, 305, 374
NlaIV GGNNCC 3 cut(s) 159, 165, 727
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 3 cut(s) 326, 593, 700
NspI RCATGY 1 cut(s) 305
OliI CACNNNNGTG 1 cut(s) 56
PagI TCATGA 1 cut(s) 370
PctI GAATGC 1 cut(s) 877
PdiI GCCGGC 2 cut(s) 162, 256
PfeI GAWTC 6 cut(s) 263, 367, 548, 671, 680, 907
PleI GAGTC 1 cut(s) 40
PluTI GGCGCC 2 cut(s) 161, 167
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 3 cut(s) 540, 684, 866
PspFI CCCAGC 3 cut(s) 70, 249, 617
PspGI CCWGG 3 cut(s) 540, 684, 866
PspN4I GGNNCC 3 cut(s) 159, 165, 727
PspPI GGNCC 3 cut(s) 186, 252, 688
PsrI GAACNNNNNNTAC 2 cut(s) 372, 404
PstI CTGCAG 1 cut(s) 838
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 2 cut(s) 323, 771
Sau96I GGNCC 3 cut(s) 186, 252, 688
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 3 cut(s) 542, 686, 868
SfaNI GCATC 4 cut(s) 346, 484, 803, 820
SfcI CTRYAG 1 cut(s) 834
SfoI GGCGCC 2 cut(s) 159, 165
SgrAI CRCCGGYG 1 cut(s) 160
SinI GGWCC 1 cut(s) 688
SmiMI CAYNNNNRTG 1 cut(s) 56
Sse9I AATT 1 cut(s) 242
SspDI GGCGCC 2 cut(s) 157, 163
SspMI CTAG 6 cut(s) 419, 512, 552, 675, 876, 881
StyD4I CCNGG 3 cut(s) 540, 684, 866
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 175, 332
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 242
TauI GCSGC 8 cut(s) 15, 68, 117, 120, 123, 169, 238, 781
TfiI GAWTC 6 cut(s) 263, 367, 548, 671, 680, 907
Tru1I TTAA 2 cut(s) 323, 771
Tru9I TTAA 2 cut(s) 323, 771
TscAI CASTG 4 cut(s) 337, 541, 709, 736
TseFI GTSAC 3 cut(s) 326, 593, 700
Tsp45I GTSAC 3 cut(s) 326, 593, 700
TspDTI ATGAA 2 cut(s) 561, 815
TspRI CASTG 4 cut(s) 337, 541, 709, 736
VpaK11BI GGWCC 1 cut(s) 688
XbaI TCTAGA 2 cut(s) 551, 674
XceI RCATGY 1 cut(s) 305
XspI CTAG 6 cut(s) 419, 512, 552, 675, 876, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.