pycom02g04330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014631
Physical Location & Seq
Reverse (-)
2836862 .. 2839441
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g04330.2

Sequence Viewer

Length: 663 bp
ATGCGGAGACCGTCGGATTTGGAAAGTGAAAGTGAGGAGGAAGGTCTTGACGAAGTTGATGACATTGACGAGGAACATGAAAATGAACTTGAAGCCTTGGTCGAAACTGAGCCAGTTAAGAAGCTTCCTGAACCCTCTCCAGCCCCTAAGGATACAGAAAGGCAGCTTTCTAAGAAGGAACTGAAGAAGAAGGGGCTTGAAGAACTTGAAGCAGTTCTTGCTGAGCTAGGATACCCTACCAAGACCGAGACCAGTGGCCAAGATGACTCCAATGGTGTTGCCCAAGAGAAGAAAGCAGAGAATATAAATGGCGATGTGGACAGGAAGGAGAATGTCACCGGGGAGAGCAAAAGTGCAAAAAAGAAGAAAAAGAAGGACAAGTCAGCGAAGGAGCCAAAAGAATCCCAGGACCAGCCTGATGGCACAAATGTTGGAAGTGCAGCAACAGATGAAAATGCTGGGACAGAGAAGGGAGAAGATGCATCTACTGGTGATGTTAAAGAGCGGCTGAAGAAAGTGGCGTCCATGAAGAAGAAGAAATCAAGCAAAGAGATGGATGCGGCCGCCCGAGCTGCTGCGAGTGAAGCTGCTGCCAGGAATGCTAGGCTAGCTGCAGCAAAGAAGAAAGAGAAGAATCACTACAACCAGCAGCCGGTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.07

Weight (kDa)

5.28

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014631)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g05450
malus_domestica MD02G1062600.v1.1 MD15G1190400.v1.1
prunus_persica Prupe.7G226700_v2.0.a1
pyrus_communis pycom02g04330 pycom15g17060
rosa_chinensis RchiOBHm_Chr2g0091121
rosa_laevigata RLG00000016181
rosa_multiflora Rmu_sc0004851.1_g000008
rosa_roxburghii Rroxscaffold_2G00150530
rosa_rugosa Rorug02G0013100 Rorug02G0013200
rosa_samantha Rh2AG059400 Rh2BG057800 Rh2CG059600 Rh2DG058700
rosa_wichuraiana Rw2G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 505
AciI CCGC 5 cut(s) 4, 505, 560, 564, 658
AcoI YGGCCR 2 cut(s) 256, 561
AcuI CTGAAG 2 cut(s) 203, 530
AcyI GRCGYC 1 cut(s) 521
AfiI CCNNNNNNNGG 1 cut(s) 652
AgsI TTSAA 3 cut(s) 92, 200, 209
AjnI CCWGG 2 cut(s) 405, 593
AluBI AGCT 6 cut(s) 124, 166, 226, 572, 587, 611
AluI AGCT 6 cut(s) 124, 166, 226, 572, 587, 611
Alw26I GTCTC 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 567
AoxI GGCC 2 cut(s) 256, 561
ApeKI GCWGC 9 cut(s) 163, 440, 572, 575, 587, 590, 611, 614, 649
Asp700I GAANNNNTTC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 328, 503
AsuNHI GCTAGC 1 cut(s) 607
AvaI CYCGRG 1 cut(s) 567
AvaII GGWCC 1 cut(s) 409
AxyI CCTNAGG 1 cut(s) 147
BalI TGGCCA 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 623, 655
BbvI GCAGC 8 cut(s) 175, 452, 559, 562, 574, 577, 598, 626
BccI CCATC 2 cut(s) 413, 547
BciT130I CCWGG 2 cut(s) 407, 595
BciVI GTATCC 2 cut(s) 145, 224
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 3 cut(s) 227, 603, 608
BfmI CTRYAG 1 cut(s) 612
BfuI GTATCC 2 cut(s) 145, 224
BlpI GCTNAGC 1 cut(s) 222
Bme1390I CCNGG 3 cut(s) 340, 407, 595
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 3 cut(s) 340, 407, 595
BmsI GCATC 3 cut(s) 469, 491, 547
BmtI GCTAGC 1 cut(s) 611
BpmI CTGGAG 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 96, 339, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse118I RCCGGY 1 cut(s) 652
Bse1I ACTGG 3 cut(s) 113, 252, 493
Bse21I CCTNAGG 1 cut(s) 147
BseBI CCWGG 2 cut(s) 407, 595
BseDI CCNNGG 3 cut(s) 96, 339, 405
BseGI GGATG 1 cut(s) 562
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMII CTCAG 2 cut(s) 99, 213
BseNI ACTGG 3 cut(s) 113, 252, 493
BseRI GAGGAG 1 cut(s) 50
BseX3I CGGCCG 1 cut(s) 561
BseXI GCAGC 8 cut(s) 175, 452, 559, 562, 574, 577, 598, 626
BseYI CCCAGC 1 cut(s) 458
BsgI GTGCAG 1 cut(s) 459
Bsh1285I CGRYCG 1 cut(s) 564
BshFI GGCC 2 cut(s) 258, 563
BsiEI CGRYCG 1 cut(s) 564
BsiHKCI CYCGRG 1 cut(s) 567
BsiSI CCGG 2 cut(s) 339, 653
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 475
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 2 cut(s) 258, 563
Bso31I GGTCTC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 567
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 5 cut(s) 4, 505, 560, 564, 658
BspANI GGCC 2 cut(s) 258, 563
BspCNI CTCAG 2 cut(s) 100, 214
BspLI GGNNCC 1 cut(s) 393
BspMAI CTGCAG 1 cut(s) 616
BspOI GCTAGC 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 652
BsrI ACTGG 3 cut(s) 113, 252, 493
BssAI RCCGGY 1 cut(s) 652
BssECI CCNNGG 3 cut(s) 96, 339, 405
BssNI GRCGYC 1 cut(s) 521
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 407, 595
Bst4CI ACNGT 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 521
BstAPI GCANNNNNTGC 2 cut(s) 218, 655
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 4 cut(s) 108, 147, 171, 222
BstF5I GGATG 1 cut(s) 562
BstMAI GTCTC 1 cut(s) 242
BstMCI CGRYCG 1 cut(s) 564
BstMWI GCNNNNNNNGC 7 cut(s) 218, 569, 572, 584, 599, 608, 655
BstNI CCWGG 2 cut(s) 407, 595
BstSCI CCNGG 3 cut(s) 338, 405, 593
BstSFI CTRYAG 1 cut(s) 612
BstV1I GCAGC 8 cut(s) 175, 452, 559, 562, 574, 577, 598, 626
BstXI CCANNNNNNTGG 1 cut(s) 419
BstZI CGGCCG 1 cut(s) 561
Bsu36I CCTNAGG 1 cut(s) 147
BsuI GTATCC 2 cut(s) 145, 224
BsuRI GGCC 2 cut(s) 258, 563
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 609
CciNI GCGGCCGC 1 cut(s) 561
Cfr10I RCCGGY 1 cut(s) 652
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 1 cut(s) 510
CviAII CATG 2 cut(s) 77, 526
DdeI CTNAG 4 cut(s) 108, 147, 171, 222
EaeI YGGCCR 2 cut(s) 256, 561
EagI CGGCCG 1 cut(s) 561
EclXI CGGCCG 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 409
Eco52I CGGCCG 1 cut(s) 561
Eco57I CTGAAG 2 cut(s) 203, 530
Eco81I CCTNAGG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 567
EcoRII CCWGG 2 cut(s) 405, 593
EcoT14I CCWWGG 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 80, 529
FaiI YATR 3 cut(s) 78, 305, 527
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 1 cut(s) 475
FatI CATG 2 cut(s) 76, 525
FokI GGATG 1 cut(s) 569
FspBI CTAG 3 cut(s) 227, 603, 608
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 2 cut(s) 258, 563
HapII CCGG 2 cut(s) 339, 653
HgaI GACGC 1 cut(s) 510
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 2 cut(s) 80, 529
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 3 cut(s) 266, 401, 634
HpaII CCGG 2 cut(s) 339, 653
HphI GGTGA 2 cut(s) 328, 503
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 47, 128
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 7 cut(s) 35, 169, 184, 319, 367, 382, 463
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4V TGCA 4 cut(s) 356, 440, 482, 614
HpyF10VI GCNNNNNNNGC 7 cut(s) 218, 569, 572, 584, 599, 608, 655
HpyF3I CTNAG 4 cut(s) 108, 147, 171, 222
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 2 cut(s) 80, 529
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 8 cut(s) 175, 452, 559, 562, 574, 577, 598, 626
LweI GCATC 3 cut(s) 469, 491, 547
MaeI CTAG 3 cut(s) 227, 603, 608
MaeIII GTNAC 1 cut(s) 334
MbiI CCGCTC 1 cut(s) 505
MlsI TGGCCA 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 4 cut(s) 28, 31, 64, 145
Mox20I TGGCCA 1 cut(s) 258
Mph1103I ATGCAT 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 213
MscI TGGCCA 1 cut(s) 258
MseI TTAA 2 cut(s) 117, 498
MslI CAYNNNNRTG 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 2 cut(s) 339, 653
MspR9I CCNGG 3 cut(s) 340, 407, 595
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 2 cut(s) 407, 595
MwoI GCNNNNNNNGC 7 cut(s) 218, 569, 572, 584, 599, 608, 655
NciI CCSGG 1 cut(s) 340
NheI GCTAGC 1 cut(s) 607
NlaIII CATG 2 cut(s) 80, 529
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 334
NotI GCGGCCGC 1 cut(s) 561
NsiI ATGCAT 1 cut(s) 484
PctI GAATGC 1 cut(s) 604
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 2 cut(s) 401, 634
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 405, 593
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 2 cut(s) 405, 593
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 616
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 117, 498
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 3 cut(s) 340, 407, 595
SetI ASST 7 cut(s) 46, 126, 168, 228, 574, 589, 613
SfaNI GCATC 3 cut(s) 469, 491, 547
SfcI CTRYAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 81
SsiI CCGC 5 cut(s) 4, 505, 560, 564, 658
SspMI CTAG 3 cut(s) 227, 603, 608
StyD4I CCNGG 3 cut(s) 338, 405, 593
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 102
TaqII GACCGA 1 cut(s) 260
TauI GCSGC 3 cut(s) 508, 563, 566
TfiI GAWTC 2 cut(s) 401, 634
Tru1I TTAA 2 cut(s) 117, 498
Tru9I TTAA 2 cut(s) 117, 498
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 9 cut(s) 163, 440, 572, 575, 587, 590, 611, 614, 649
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 4 cut(s) 93, 99, 465, 542
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 3 cut(s) 227, 603, 608
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.