Prupe.7G226700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014631
Physical Location & Seq
Reverse (-)
20063088 .. 20066307
3220 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G226700.1

Sequence Viewer

Length: 972 bp
ATGGTGGGAGGCGGGAACCGAAAGGACGAGTCTGTGGTTCTGAATAGCACCAACGTGTTTGCGGCGCTCGGGAGCTTGAAGAAGAAGAAGAAGTCCGAGAAGGGTTCCTCCAAGAGCTCGAAAAGCGGCACAGCTCAGAATCCTGAGGAGGCCGAAAAAGAGGTGTTTTGGGCCCCTGCGCCCCTCAACGTGAAATCGTGGGCCGATGTCGATGACGAGGACGAGGACGACTACTATGCAACTACAGCTCCGCCCGAATTGGGCTGGGCTGGTGAGGATTCAAAGGTGGCCAAGGAGACTGAGCATGAAGCTGAGCATGTGGAAGTCGGTGAACTGGTAAGTGAAAGCGAGGAGGAAGGACTTGATGAAGTTGATGATGTCGACGAGGAACATGAAAATGAACTTGAAGCACCAGTGGAAACTGAGCCACTTAAGAAGCCCCTTGAAGCTTCTCCAGCTCCTAAGGATACTGAAAGGCAGCTTTCTAAGAAGGAACTGAAGAAAAAGGGGCTTGAAGAACTTGAAGCTGTTCTTGCAGAGCTAGGATACGGTGCCAAAAGCGAGACCGGTGGCCAAGATGATTCCAGTGGTATTGCACAAGAGAAGAAGGTAGAGAATCTAAATGGCGAGGTAGACAAGAAGGAGAATGCCACCGGGGAGAGCAAAAGTGCAAAAAAGAAGAAAAAGAAGGATAAGTCATTGAAGGAGCCAAAAGAATCCCCGGACCAGCCTGATGGCATCGATGTTGCGGCAGCAGATGAAGATGCTGGGACAGATAAGGGAGAAAATACATCTGCTGGTGATGTTAAAGAGCGGCTAAAGAAAGTGGCATCTATGAAGAAGAAGAAATCAAGCAAAGAAATGGATGCAGCTGCCCGAGCTGCTGCGAGTGAAGCTGCTGCTAGGAATGCAAGGCTAGCTGCAGCAAAGAAAAAAGAGAAGAACCACTACAATCAACAGCCGGTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

34.92

Weight (kDa)

4.96

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014631)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g05450
malus_domestica MD02G1062600.v1.1 MD15G1190400.v1.1
prunus_persica Prupe.7G226700_v2.0.a1
pyrus_communis pycom02g04330 pycom15g17060
rosa_chinensis RchiOBHm_Chr2g0091121
rosa_laevigata RLG00000016181
rosa_multiflora Rmu_sc0004851.1_g000008
rosa_roxburghii Rroxscaffold_2G00150530
rosa_rugosa Rorug02G0013100 Rorug02G0013200
rosa_samantha Rh2AG059400 Rh2BG057800 Rh2CG059600 Rh2DG058700
rosa_wichuraiana Rw2G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 551
AccBSI CCGCTC 1 cut(s) 814
AccI GTMKAC 2 cut(s) 381, 633
AciI CCGC 7 cut(s) 12, 62, 126, 251, 749, 814, 967
AcoI YGGCCR 2 cut(s) 288, 571
AcuI CTGAAG 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 260
AflII CTTAAG 1 cut(s) 431
AflIII ACRYGT 1 cut(s) 54
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 7 cut(s) 79, 282, 407, 446, 515, 524, 703
AleI CACNNNNGTG 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 290, 557
Ama87I CYCGRG 2 cut(s) 68, 876
AoxI GGCC 5 cut(s) 150, 171, 201, 288, 571
ApaI GGGCCC 1 cut(s) 175
AsiGI ACCGGT 1 cut(s) 566
Asp700I GAANNNNTTC 1 cut(s) 528
AspLEI GCGC 2 cut(s) 67, 181
AspS9I GGNCC 4 cut(s) 171, 172, 201, 724
AsuC2I CCSGG 2 cut(s) 655, 722
AsuHPI GGTGA 3 cut(s) 284, 341, 812
AsuNHI GCTAGC 1 cut(s) 916
AvaI CYCGRG 2 cut(s) 68, 876
AvaII GGWCC 1 cut(s) 724
AxyI CCTNAGG 2 cut(s) 144, 462
BaeGI GKGCMC 1 cut(s) 175
BalI TGGCCA 2 cut(s) 290, 573
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 2 cut(s) 119, 175
BarI GAAGNNNNNNTAC 2 cut(s) 932, 964
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 1 cut(s) 728
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciVI GTATCC 2 cut(s) 460, 539
BcnI CCSGG 2 cut(s) 655, 722
BcoDI GTCTC 2 cut(s) 290, 557
BfaI CTAG 3 cut(s) 542, 903, 917
BfmI CTRYAG 2 cut(s) 243, 921
BfoI RGCGCY 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 431
BfuI GTATCC 2 cut(s) 460, 539
BlpI GCTNAGC 1 cut(s) 312
Bme1390I CCNGG 2 cut(s) 655, 722
Bme18I GGWCC 1 cut(s) 724
BmeT110I CYCGRG 2 cut(s) 68, 876
BmgT120I GGNCC 4 cut(s) 171, 172, 201, 724
BmiI GGNNCC 6 cut(s) 17, 106, 173, 174, 553, 708
BmrFI CCNGG 2 cut(s) 655, 722
BmsI GCATC 4 cut(s) 747, 754, 839, 856
BmtI GCTAGC 1 cut(s) 920
BpmI CTGGAG 1 cut(s) 438
Bpu1102I GCTNAGC 1 cut(s) 312
BpuMI CCSGG 2 cut(s) 655, 722
Bsa29I ATCGAT 1 cut(s) 741
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 3 cut(s) 291, 654, 720
BsaWI WCCGGW 1 cut(s) 566
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse118I RCCGGY 2 cut(s) 566, 961
Bse1I ACTGG 3 cut(s) 339, 413, 585
Bse21I CCTNAGG 2 cut(s) 144, 462
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 3 cut(s) 291, 654, 720
BseGI GGATG 1 cut(s) 871
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMII CTCAG 5 cut(s) 135, 149, 291, 303, 414
BseNI ACTGG 3 cut(s) 339, 413, 585
BseRI GAGGAG 2 cut(s) 161, 365
BseSI GKGCMC 1 cut(s) 175
BseYI CCCAGC 2 cut(s) 264, 767
BshFI GGCC 5 cut(s) 152, 173, 203, 290, 573
BshNI GGYRCC 1 cut(s) 551
BshTI ACCGGT 1 cut(s) 566
BshVI ATCGAT 1 cut(s) 741
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 2 cut(s) 68, 876
BsiSI CCGG 4 cut(s) 567, 654, 722, 962
BslFI GGGAC 1 cut(s) 784
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 290, 557
BsmFI GGGAC 1 cut(s) 784
BsmI GAATGC 2 cut(s) 652, 913
BsnI GGCC 5 cut(s) 152, 173, 203, 290, 573
Bso31I GGTCTC 1 cut(s) 557
BsoBI CYCGRG 2 cut(s) 68, 876
Bsp120I GGGCCC 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 119, 175
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 7 cut(s) 12, 62, 126, 251, 749, 814, 967
BspANI GGCC 5 cut(s) 152, 173, 203, 290, 573
BspCNI CTCAG 5 cut(s) 136, 148, 292, 304, 415
BspDI ATCGAT 1 cut(s) 741
BspLI GGNNCC 6 cut(s) 17, 106, 173, 174, 553, 708
BspMAI CTGCAG 1 cut(s) 925
BspOI GCTAGC 1 cut(s) 920
BspT107I GGYRCC 1 cut(s) 551
BspTI CTTAAG 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 557
BsrBI CCGCTC 1 cut(s) 814
BsrFI RCCGGY 2 cut(s) 566, 961
BsrI ACTGG 3 cut(s) 339, 413, 585
BssAI RCCGGY 2 cut(s) 566, 961
BssECI CCNNGG 3 cut(s) 291, 654, 720
BssT1I CCWWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 551
BstAFI CTTAAG 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 7 cut(s) 135, 144, 300, 312, 423, 462, 486
BstF5I GGATG 1 cut(s) 871
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 2 cut(s) 67, 181
BstMAI GTCTC 2 cut(s) 290, 557
BstMWI GCNNNNNNNGC 9 cut(s) 123, 245, 455, 533, 878, 881, 893, 908, 917
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 653, 720
BstSFI CTRYAG 2 cut(s) 243, 921
BstSLI GKGCMC 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 734
Bsu15I ATCGAT 1 cut(s) 741
Bsu36I CCTNAGG 2 cut(s) 144, 462
BsuI GTATCC 2 cut(s) 460, 539
BsuRI GGCC 5 cut(s) 152, 173, 203, 290, 573
BsuTUI ATCGAT 1 cut(s) 741
BtsCI GGATG 1 cut(s) 871
BtsIMutI CAGTG 2 cut(s) 420, 592
Cac8I GCNNGC 1 cut(s) 918
CfoI GCGC 2 cut(s) 67, 181
Cfr10I RCCGGY 2 cut(s) 566, 961
Cfr13I GGNCC 4 cut(s) 171, 172, 201, 724
ClaI ATCGAT 1 cut(s) 741
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 3 cut(s) 305, 317, 392
DdeI CTNAG 7 cut(s) 135, 144, 300, 312, 423, 462, 486
EaeI YGGCCR 2 cut(s) 288, 571
EciI GGCGGA 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 2 cut(s) 119, 175
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 724
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 518
Eco81I CCTNAGG 2 cut(s) 144, 462
Eco88I CYCGRG 2 cut(s) 68, 876
EcoICRI GAGCTC 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 291
EcoT38I GRGCYC 2 cut(s) 119, 175
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 3 cut(s) 308, 320, 395
FaiI YATR 5 cut(s) 237, 306, 318, 393, 836
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 784
FatI CATG 3 cut(s) 304, 316, 391
FauI CCCGC 1 cut(s) 5
FblI GTMKAC 2 cut(s) 381, 633
FokI GGATG 1 cut(s) 878
FriOI GRGCYC 2 cut(s) 119, 175
FspBI CTAG 3 cut(s) 542, 903, 917
GlaI GCGC 2 cut(s) 66, 180
GsaI CCCAGC 2 cut(s) 268, 771
GsuI CTGGAG 1 cut(s) 438
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 5 cut(s) 152, 173, 203, 290, 573
HapII CCGG 4 cut(s) 567, 654, 722, 962
HhaI GCGC 2 cut(s) 67, 181
Hin1II CATG 3 cut(s) 308, 320, 395
Hin6I GCGC 2 cut(s) 65, 179
HinP1I GCGC 2 cut(s) 65, 179
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 6 cut(s) 29, 139, 278, 581, 616, 716
HpaII CCGG 4 cut(s) 567, 654, 722, 962
HphI GGTGA 3 cut(s) 284, 341, 812
Hpy166II GTNNAC 3 cut(s) 332, 382, 634
Hpy188I TCNGA 3 cut(s) 42, 97, 138
Hpy188III TCNNGA 2 cut(s) 70, 143
Hpy8I GTNNAC 3 cut(s) 332, 382, 634
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 7 cut(s) 94, 350, 484, 601, 634, 682, 697
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 2 cut(s) 54, 189
HpyCH4V TGCA 7 cut(s) 239, 536, 596, 671, 869, 911, 923
HpyF10VI GCNNNNNNNGC 9 cut(s) 123, 245, 455, 533, 878, 881, 893, 908, 917
HpyF3I CTNAG 7 cut(s) 135, 144, 300, 312, 423, 462, 486
HpySE526I ACGT 2 cut(s) 54, 189
Hsp92II CATG 3 cut(s) 308, 320, 395
HspAI GCGC 2 cut(s) 65, 179
LmnI GCTCC 4 cut(s) 72, 253, 463, 706
LweI GCATC 4 cut(s) 747, 754, 839, 856
MaeI CTAG 3 cut(s) 542, 903, 917
MaeII ACGT 2 cut(s) 54, 189
MbiI CCGCTC 1 cut(s) 814
MhlI GDGCHC 2 cut(s) 119, 175
MlsI TGGCCA 2 cut(s) 290, 573
MluCI AATT 1 cut(s) 257
MluNI TGGCCA 2 cut(s) 290, 573
MlyI GAGTC 1 cut(s) 38
Mox20I TGGCCA 2 cut(s) 290, 573
MroXI GAANNNNTTC 1 cut(s) 528
MscI TGGCCA 2 cut(s) 290, 573
MseI TTAA 2 cut(s) 432, 807
MslI CAYNNNNRTG 2 cut(s) 53, 396
Msp20I TGGCCA 2 cut(s) 290, 573
MspA1I CMGCKG 1 cut(s) 872
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 4 cut(s) 567, 654, 722, 962
MspR9I CCNGG 2 cut(s) 655, 722
Mva1269I GAATGC 2 cut(s) 652, 913
MwoI GCNNNNNNNGC 9 cut(s) 123, 245, 455, 533, 878, 881, 893, 908, 917
NciI CCSGG 2 cut(s) 655, 722
NheI GCTAGC 1 cut(s) 916
NlaIII CATG 3 cut(s) 308, 320, 395
NlaIV GGNNCC 6 cut(s) 17, 106, 173, 174, 553, 708
NspI RCATGY 1 cut(s) 320
OliI CACNNNNGTG 1 cut(s) 53
PctI GAATGC 2 cut(s) 652, 913
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 5 cut(s) 139, 278, 581, 616, 716
PinAI ACCGGT 1 cut(s) 566
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 119
PspFI CCCAGC 2 cut(s) 264, 767
PspN4I GGNNCC 6 cut(s) 17, 106, 173, 174, 553, 708
PspOMI GGGCCC 1 cut(s) 171
PspPI GGNCC 4 cut(s) 171, 172, 201, 724
PstI CTGCAG 1 cut(s) 925
PvuII CAGCTG 1 cut(s) 872
RseI CAYNNNNRTG 2 cut(s) 53, 396
SacI GAGCTC 1 cut(s) 119
SalI GTCGAC 1 cut(s) 380
SaqAI TTAA 2 cut(s) 432, 807
Sau96I GGNCC 4 cut(s) 171, 172, 201, 724
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 655, 722
SduI GDGCHC 2 cut(s) 119, 175
SfaNI GCATC 4 cut(s) 747, 754, 839, 856
SfcI CTRYAG 2 cut(s) 243, 921
SinI GGWCC 1 cut(s) 724
SmiMI CAYNNNNRTG 2 cut(s) 53, 396
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 1 cut(s) 257
SsiI CCGC 7 cut(s) 12, 62, 126, 251, 749, 814, 967
SspMI CTAG 3 cut(s) 542, 903, 917
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 653, 720
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 2 cut(s) 57, 192
TaqI TCGA 4 cut(s) 119, 210, 381, 741
TasI AATT 1 cut(s) 257
TauI GCSGC 4 cut(s) 65, 129, 752, 817
TfiI GAWTC 5 cut(s) 139, 278, 581, 616, 716
Tru1I TTAA 2 cut(s) 432, 807
Tru9I TTAA 2 cut(s) 432, 807
TscAI CASTG 2 cut(s) 420, 592
TspDTI ATGAA 6 cut(s) 321, 381, 408, 414, 774, 851
TspRI CASTG 2 cut(s) 420, 592
Vha464I CTTAAG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 724
XceI RCATGY 1 cut(s) 320
XmiI GTMKAC 2 cut(s) 381, 633
XmnI GAANNNNTTC 1 cut(s) 528
XspI CTAG 3 cut(s) 542, 903, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.