Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014633

Physical Location & Seq

Genomic Coordinates Reverse (-)

3771408 .. 3772835

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGCTTCAGTCACTTGGCTTCAGCCAACCAACTCCACAATCTCTTCTTCTCGCTTCAAACCTCACCCCACCACTCCAAACCCTAACCCTCATCATCTCTTCCTCAAAACCCAACCTTTCTCATCCTTCAATCCCACCCCACCCAACCCATTTCGCACTTCCGCCGTCAATAATCCCAGCACCAACCGCCGCTACACCCGCTCCTCTCCGCCGCAACCCACCCGCCCTCGCTCCAAACCCGTATTCAAAACCCAACCCACCAACTACCCGACCCGAAATGAACCAAATGTGGGCGACCCATCACTGAAAGACGTGGACTTGATGGGTCTGTGCAAGGAGGGCAAGGTCGAAGAGGCCTTGGAGTATATGGGTCATGGCGTTTCTGCCGATTACGGTGTTTTCTGTGCGTTGGCGGAGCTCTGTGACGGCTTGAAATTTGGGAGGAAGATTGAGCAGTACTTGAAATTGACGCCTTTTGGTAGAGATATCGAGTTGAATGTGAAATTGATTGAAATGTATGCCAAATGTGGGAGCACTAGAGATGCACGCAAGGTGTTCGATAGAATGCCTGAGAGGGATTTGAGGGTGTGGCATTCGATGATCAATGCGTATGCGGCGAATGGGGAAGGGAGTGAGGGGGTGGTGTTGTTTGAGAGAATGAGGAGTGAGGGGTTGAAGCCGGATAAGGAGAGTGTTGCGGTGGTGTTGGCGGCGTGCGCGAGTGCGGGGGCGGTGGAAGAGGGGGTGAGGTACTTTGAATCGATGGAGGATGAGTATGGGATTGTGCCGGAGATTGAGCATTATGTAGGGGTTGTTGATGTGCTTGGGAAGTCTGGTCATTTGAATGAAGCTGTGGAGTTCGTTGAGAGGATGCCGTTTGAGCCTACCACGGAAGTTTGGGAGGCTCTTAGGGACTTGGCACGGATTCATGGAGATCTTGAGCTTGAAGATCGCGCGGAGGAGTTGTTGGTTAGTTTTGATCCTTCTAAGGCTAGTGGTGATAAAATGCCGTTGCCTCCAAGGAAGAAGTACTCTGAGATTAACATGCTGGAGGTGAGGAATAAGGTGAGTGAGTATAGGTGTATAGACATATATGGAGAGTCATATGAGCAATCGAAAGGTTTGAGAGGACAGATGAGGGAAGCAGGTTATGTGCCGGATACTAGGTACGTGTTGCACGACATTGATCAGGAAGCAAAAGAGCAGGCTTTGCAGTATCATAGCGAACGGTTGGCAATTGCTTATGGTCTGATCAGTACACCTGCTAGGCAAACTCTACGGATTATAAAGAACCTTCGTATCTGTGGTGATTGCCATAATGCAATTAAAATCATGTCGAAGATTGTTGGGAGGGAGCTGATTGTTAGGGATAACAAGCGGTTCCATCATTTCAAGAGTGGGAAATGCTCATGTGGAGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

476

Amino Acids

53.78

Weight (kDa)

6.69

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	196 - 225	8.3e-06	PPR repeat
DYW_deaminase	PF14432	383 - 475	6.7e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07130
malus_domestica	MD02G1075300.v1.1 MD02G1075700.v1.1 MD15G1204400.v1.1
prunus_persica	Prupe.7G212800_v2.0.a1
pyrus_communis	pycom02g05940 pycom15g18120
rosa_chinensis	RchiOBHm_Chr2g0093011
rosa_laevigata	RLG00000016359
rosa_multiflora	Rmu_sc0000965.1_g000023
rosa_roxburghii	Rroxscaffold_2G00148620
rosa_rugosa	Rorug02G0031500
rosa_samantha	Rh2AG077200 Rh2BG078600 Rh2CG080800 Rh2DG076000
rosa_wichuraiana	Rw2G006900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1286
AarI	CACCTGC	1 cut(s)	1270
Acc36I	ACCTGC	2 cut(s)	1136, 1270
AccBSI	CCGCTC	1 cut(s)	201
AccII	CGCG	3 cut(s)	719, 954, 956
AclWI	GGATC	1 cut(s)	974
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	470
AfaI	GTAC	5 cut(s)	458, 752, 1031, 1169, 1258
AfiI	CCNNNNNNNGG	2 cut(s)	290, 528
AflIII	ACRYGT	1 cut(s)	1170
AjiI	CACGTC	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	4 cut(s)	418, 851, 943, 1357
AluI	AGCT	4 cut(s)	418, 851, 943, 1357
Alw21I	GWGCWC	2 cut(s)	420, 536
AlwI	GGATC	1 cut(s)	974
AoxI	GGCC	1 cut(s)	354
ApoI	RAATTY	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	719, 956
AsuHPI	GGTGA	6 cut(s)	56, 757, 1010, 1066, 1078, 1319
BaeI	ACNNNNGTAYC	2 cut(s)	1282, 1315
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	420, 536
BccI	CCATC	4 cut(s)	307, 316, 757, 1392
BceAI	ACGGC	4 cut(s)	149, 442, 859, 994
BcgI	CGANNNNNNTGC	2 cut(s)	538, 572
BciVI	GTATCC	1 cut(s)	1153
BclI	TGATCA	3 cut(s)	600, 1186, 1251
BfaI	CTAG	4 cut(s)	537, 993, 1164, 1266
BfuAI	ACCTGC	2 cut(s)	1136, 1270
BfuI	GTATCC	1 cut(s)	1153
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	4 cut(s)	190, 212, 615, 711
BlsI	GCNGC	4 cut(s)	191, 213, 616, 712
BmcAI	AGTACT	2 cut(s)	458, 1031
BmgBI	CACGTC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	1382
BmsI	GCATC	2 cut(s)	532, 861
BpmI	CTGGAG	1 cut(s)	1070
BpuEI	CTTGAG	1 cut(s)	959
Bsa29I	ATCGAT	1 cut(s)	761
BsaAI	YACGTR	1 cut(s)	1171
BsaHI	GRCGYC	1 cut(s)	470
BsaJI	CCNNGG	3 cut(s)	357, 888, 1019
BsaXI	ACNNNNNCTCC	6 cut(s)	185, 215, 758, 788, 950, 980
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 528
Bse1I	ACTGG	1 cut(s)	1427
BseCI	ATCGAT	1 cut(s)	761
BseDI	CCNNGG	3 cut(s)	357, 888, 1019
BseGI	GGATG	3 cut(s)	122, 775, 876
BseLI	CCNNNNNNNGG	2 cut(s)	290, 528
BseMII	CTCAG	2 cut(s)	561, 1026
BseNI	ACTGG	1 cut(s)	1427
BseRI	GAGGAG	3 cut(s)	193, 676, 974
BseYI	CCCAGC	1 cut(s)	176
Bsh1236I	CGCG	3 cut(s)	719, 954, 956
BshFI	GGCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	761
BsiHKAI	GWGCWC	2 cut(s)	420, 536
BsiSI	CCGG	3 cut(s)	680, 788, 1157
BslFI	GGGAC	1 cut(s)	926
BslI	CCNNNNNNNGG	2 cut(s)	290, 528
BsmFI	GGGAC	1 cut(s)	926
BsmI	GAATGC	2 cut(s)	570, 592
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	420, 536
Bsp143I	GATC	6 cut(s)	600, 934, 949, 979, 1186, 1251
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	2 cut(s)	562, 1027
BspDI	ATCGAT	1 cut(s)	761
BspFNI	CGCG	3 cut(s)	719, 954, 956
BspLI	GGNNCC	1 cut(s)	1382
BspMI	ACCTGC	2 cut(s)	1136, 1270
BspPI	GGATC	1 cut(s)	974
BsrBI	CCGCTC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	1427
BssECI	CCNNGG	3 cut(s)	357, 888, 1019
BssMI	GATC	6 cut(s)	600, 934, 949, 979, 1186, 1251
BssNI	GRCGYC	1 cut(s)	470
BssT1I	CCWWGG	2 cut(s)	357, 1019
Bst4CI	ACNGT	2 cut(s)	395, 1230
Bst6I	CTCTTC	4 cut(s)	49, 104, 345, 732
BstACI	GRCGYC	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	1210
BstBAI	YACGTR	1 cut(s)	1171
BstC8I	GCNNGC	3 cut(s)	547, 715, 1206
BstDEI	CTNAG	4 cut(s)	570, 908, 987, 1035
BstDSI	CCRYGG	1 cut(s)	888
BstF5I	GGATG	3 cut(s)	122, 775, 876
BstFNI	CGCG	3 cut(s)	719, 954, 956
BstHHI	GCGC	2 cut(s)	719, 956
BstKTI	GATC	6 cut(s)	603, 937, 952, 982, 1189, 1254
BstMBI	GATC	6 cut(s)	600, 934, 949, 979, 1186, 1251
BstMWI	GCNNNNNNNGC	7 cut(s)	186, 198, 339, 614, 716, 880, 1210
BstNSI	RCATGY	1 cut(s)	1048
BstUI	CGCG	3 cut(s)	719, 954, 956
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
Bsu15I	ATCGAT	1 cut(s)	761
BsuI	GTATCC	1 cut(s)	1153
BsuRI	GGCC	1 cut(s)	356
BsuTUI	ATCGAT	1 cut(s)	761
BtgI	CCRYGG	1 cut(s)	888
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	122, 775, 876
BtsIMutI	CAGTG	1 cut(s)	302
BveI	ACCTGC	2 cut(s)	1136, 1270
Cac8I	GCNNGC	3 cut(s)	547, 715, 1206
CfoI	GCGC	2 cut(s)	719, 956
ClaI	ATCGAT	1 cut(s)	761
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	5 cut(s)	457, 751, 1030, 1168, 1257
CviAII	CATG	5 cut(s)	374, 929, 1045, 1333, 1410
CviQI	GTAC	5 cut(s)	457, 751, 1030, 1168, 1257
DdeI	CTNAG	4 cut(s)	570, 908, 987, 1035
DpnI	GATC	6 cut(s)	602, 936, 951, 981, 1188, 1253
DpnII	GATC	6 cut(s)	600, 934, 949, 979, 1186, 1251
Eam1104I	CTCTTC	4 cut(s)	49, 104, 345, 732
EarI	CTCTTC	4 cut(s)	49, 104, 345, 732
EciI	GGCGGA	3 cut(s)	151, 198, 428
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	357, 1019
Eco147I	AGGCCT	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	5
EcoICRI	GAGCTC	1 cut(s)	418
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	2 cut(s)	357, 1019
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	357, 1019
FaeI	CATG	5 cut(s)	377, 932, 1048, 1336, 1413
FaqI	GGGAC	1 cut(s)	926
FatI	CATG	5 cut(s)	373, 928, 1044, 1332, 1409
FauI	CCCGC	3 cut(s)	206, 230, 718
FauNDI	CATATG	1 cut(s)	1105
FbaI	TGATCA	3 cut(s)	600, 1186, 1251
Fnu4HI	GCNGC	4 cut(s)	190, 212, 615, 711
FokI	GGATG	3 cut(s)	109, 782, 883
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	4 cut(s)	190, 212, 615, 711
FspBI	CTAG	4 cut(s)	537, 993, 1164, 1266
GlaI	GCGC	2 cut(s)	718, 955
GluI	GCNGC	4 cut(s)	190, 212, 615, 711
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	1070
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	3 cut(s)	680, 788, 1157
HgaI	GACGC	1 cut(s)	478
HhaI	GCGC	2 cut(s)	719, 956
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	5 cut(s)	377, 932, 1048, 1336, 1413
Hin6I	GCGC	2 cut(s)	717, 954
HinP1I	GCGC	2 cut(s)	717, 954
HinfI	GANTC	3 cut(s)	758, 925, 1100
HpaII	CCGG	3 cut(s)	680, 788, 1157
HphI	GGTGA	6 cut(s)	56, 757, 1010, 1066, 1078, 1319
Hpy166II	GTNNAC	2 cut(s)	316, 1259
Hpy188I	TCNGA	2 cut(s)	1036, 1251
Hpy188III	TCNNGA	3 cut(s)	938, 1190, 1393
Hpy8I	GTNNAC	2 cut(s)	316, 1259
HpyAV	CCTTC	4 cut(s)	136, 620, 993, 1304
HpyCH4III	ACNGT	2 cut(s)	395, 1230
HpyCH4IV	ACGT	2 cut(s)	312, 1170
HpyCH4V	TGCA	5 cut(s)	333, 545, 1177, 1213, 1322
HpyF10VI	GCNNNNNNNGC	7 cut(s)	186, 198, 339, 614, 716, 880, 1210
HpyF3I	CTNAG	4 cut(s)	570, 908, 987, 1035
HpySE526I	ACGT	2 cut(s)	312, 1170
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	5 cut(s)	377, 932, 1048, 1336, 1413
HspAI	GCGC	2 cut(s)	717, 954
Ksp22I	TGATCA	3 cut(s)	600, 1186, 1251
Kzo9I	GATC	6 cut(s)	600, 934, 949, 979, 1186, 1251
LmnI	GCTCC	5 cut(s)	206, 236, 415, 531, 1354
LweI	GCATC	2 cut(s)	532, 861
MaeI	CTAG	4 cut(s)	537, 993, 1164, 1266
MaeII	ACGT	2 cut(s)	312, 1170
MaeIII	GTNAC	2 cut(s)	10, 422
MalI	GATC	6 cut(s)	602, 936, 951, 981, 1188, 1253
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	6 cut(s)	600, 934, 949, 979, 1186, 1251
MboII	GAAGA	9 cut(s)	36, 39, 91, 362, 457, 749, 959, 1036, 1351
MfeI	CAATTG	1 cut(s)	1236
MflI	RGATCY	1 cut(s)	934
MhlI	GDGCHC	2 cut(s)	420, 536
MluCI	AATT	5 cut(s)	434, 464, 503, 1236, 1323
MlyI	GAGTC	1 cut(s)	1109
MseI	TTAA	2 cut(s)	1041, 1326
MslI	CAYNNNNRTG	1 cut(s)	843
MspI	CCGG	3 cut(s)	680, 788, 1157
MunI	CAATTG	1 cut(s)	1236
Mva1269I	GAATGC	2 cut(s)	570, 592
MvnI	CGCG	3 cut(s)	719, 954, 956
MwoI	GCNNNNNNNGC	7 cut(s)	186, 198, 339, 614, 716, 880, 1210
NdeI	CATATG	1 cut(s)	1105
NdeII	GATC	6 cut(s)	600, 934, 949, 979, 1186, 1251
NlaIII	CATG	5 cut(s)	377, 932, 1048, 1336, 1413
NlaIV	GGNNCC	1 cut(s)	1382
NmuCI	GTSAC	2 cut(s)	10, 422
NspI	RCATGY	1 cut(s)	1048
PaqCI	CACCTGC	1 cut(s)	1270
PceI	AGGCCT	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	1176
PctI	GAATGC	2 cut(s)	570, 592
PfeI	GAWTC	2 cut(s)	758, 925
PkrI	GCNGC	4 cut(s)	191, 213, 616, 712
PleI	GAGTC	1 cut(s)	1108
PpsI	GAGTC	1 cut(s)	1108
Ppu21I	YACGTR	1 cut(s)	1171
PsiI	TTATAA	1 cut(s)	1286
Psp124BI	GAGCTC	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	1382
PsuI	RGATCY	1 cut(s)	934
RsaI	GTAC	5 cut(s)	458, 752, 1031, 1169, 1258
RsaNI	GTAC	5 cut(s)	457, 751, 1030, 1168, 1257
RseI	CAYNNNNRTG	1 cut(s)	843
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	1041, 1326
SatI	GCNGC	4 cut(s)	190, 212, 615, 711
Sau3AI	GATC	6 cut(s)	600, 934, 949, 979, 1186, 1251
ScaI	AGTACT	2 cut(s)	458, 1031
SchI	GAGTC	1 cut(s)	1109
SduI	GDGCHC	2 cut(s)	420, 536
SfaNI	GCATC	2 cut(s)	532, 861
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	1 cut(s)	938
SmoI	CTYRAG	1 cut(s)	938
Sse9I	AATT	5 cut(s)	434, 464, 503, 1236, 1323
SseBI	AGGCCT	1 cut(s)	356
SspMI	CTAG	4 cut(s)	537, 993, 1164, 1266
SstI	GAGCTC	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	356
StyI	CCWWGG	2 cut(s)	357, 1019
TaaI	ACNGT	2 cut(s)	395, 1230
TaiI	ACGT	2 cut(s)	315, 1173
TaqI	TCGA	7 cut(s)	348, 489, 558, 596, 761, 1115, 1337
TasI	AATT	5 cut(s)	434, 464, 503, 1236, 1323
TatI	WGTACW	3 cut(s)	456, 1029, 1256
TauI	GCSGC	4 cut(s)	192, 214, 617, 713
TfiI	GAWTC	2 cut(s)	758, 925
Tru1I	TTAA	2 cut(s)	1041, 1326
Tru9I	TTAA	2 cut(s)	1041, 1326
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	10, 422
Tsp45I	GTSAC	2 cut(s)	10, 422
TspDTI	ATGAA	3 cut(s)	294, 861, 917
TspGWI	ACGGA	3 cut(s)	905, 937, 1294
TspRI	CASTG	1 cut(s)	309
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	1048
XspI	CTAG	4 cut(s)	537, 993, 1164, 1266
ZrmI	AGTACT	2 cut(s)	458, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.