Prupe.7G212800_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
19379048 .. 19380871
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G212800.1

Sequence Viewer

Length: 1515 bp
ATGGCTTCTCTGACTTCTTCTCTTCAGCCAACTGGAAACTCCATTACCTCTTTTCGTTTCAGAGCTCGGATAACTCCAACCCCTCCTGATATGCTCTATCTCAACACCACTCTTCCTTCGGTCCTCAAAACCACACCTTCCTCTTCCTTCAATCCCATCCCATCCAAACCTCTCTGCACCAATGCAGTTCCCAGTGCCAATAATCCCAGAGTACATCGCCGCAACACTGGCTCCTCTCAGCCCCAACCAACAACATCTCGCTCCAATTCCCAGTACAAGACCCAACCTTTACGCAAGGGCAACAAGTACCAGAGCCAGCAACCAAATGAACCCAAAGCGAACGGTGATGAGTTAAACAACCAAAATTTGAGTGCTCCATTGCGTATTAACACAAAAGATGTGGATTTGATGCGTTTGTGCAAGGAGGGTAAGGTCAAAGAGGCGTTGCAGTATATGGCTCAAGATGTTTCCGCTGATTATGGTGTATTTTGTGTGTTATTGGACTCGTGTGACAGCTCGAAGTCGCTTGAGGTTGGGAAAAAGATTCATGATTTTATGAAACAGTGGCCATTTCGTGGAGATATTGAGTTGAACGCTAAATTGATTCAAATGTATGGAAGATGTGGGAGTATGAGAGATGCACGCAAGGTGTTCGATCGAATGCCTAAGCGGAGTATGAGTTTGTGGCATTCAATGATACATGGGTATGCGGTGAATGGGCAGGGTGATGAGGGGCTGCTGTTGTTTGAACAAATGAGGAATTTAGGATTGAAGCCCAATAAGGAGACATTTGTAGTGGTTTTGGTGGCATGTGCTAGCGCGGAAGCTGTGGAAGAAGGGTTAACTTACTTCGAGTCGATGAAGAATGAGTATGAGATTGTGCCGGAGATTGAGCATTATTTAGGGCTTATTGATGTTCTTGGAAAGTCTGGTCATTTGAATGAGGCAGAGGAATTCATTGAGAAAATGCCATTTGAGCCTACTGCAGAAGTTTGGGAGGCTCTTCGAAACTTTGCGCGGATTCATGGAGACATTGAGCTTGAAGATCGCGCTGAGGATTTGTTGGTTAGTCTCGATCCTTCTAAGGCCAATGCTGAAAAAATCCCATTGCCTCTGCGGAAGCAGCACTCTGAGATTAACATGCTAGGGGAGAAGAATAGGGTGAGTGAGTATCGGATTACAAACGAGGCATATGAGAAACTGAAGGGTTTGAAAGGACAGATGAGGGAAGCAGGCTATGTGCCAGATACAAGATATGTGCTTCATGACATTGATCAGGAGGCAAAAGAGCAGGCCTTGCAGTATCACAGCGAGCGTTTGGCAATTGCTTATGGTCTGATCAGTACTCCAGCCAGGCAAACTCTAAGGATAATTAAGAATCTTCGAATATGCGGCGACTGCCATAATGCAATAAAAATCATGTCAAAGATCGTTGGGAGGGAGCTGATCGTCAGGGATAACAAGCGGTTCCATCATTTCAAGGATGGGAAATGCTCCTGTGGGGATTACTGGTAA

Protein Analysis

505

Amino Acids

57.13

Weight (kDa)

8.5

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014633)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 575
AccII CGCG 3 cut(s) 821, 1018, 1050
AciI CCGC 9 cut(s) 220, 471, 670, 710, 821, 1018, 1117, 1392, 1465
AclWI GGATC 1 cut(s) 1070
AcoI YGGCCR 1 cut(s) 566
AcsI RAATTY 3 cut(s) 364, 760, 953
AcuI CTGAAG 2 cut(s) 8, 1223
AfaI GTAC 4 cut(s) 213, 275, 308, 1345
AfiI CCNNNNNNNGG 1 cut(s) 575
AjnI CCWGG 1 cut(s) 1352
AluBI AGCT 5 cut(s) 65, 516, 827, 1039, 1444
AluI AGCT 5 cut(s) 65, 516, 827, 1039, 1444
Alw21I GWGCWC 2 cut(s) 67, 376
Alw26I GTCTC 3 cut(s) 779, 1023, 1076
AlwI GGATC 1 cut(s) 1070
AoxI GGCC 3 cut(s) 566, 1086, 1293
ApeKI GCWGC 2 cut(s) 736, 1123
ApoI RAATTY 3 cut(s) 364, 760, 953
AspLEI GCGC 3 cut(s) 821, 1018, 1052
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 4 cut(s) 356, 724, 737, 1174
AsuII TTCGAA 2 cut(s) 1006, 1384
AsuNHI GCTAGC 1 cut(s) 815
AvaII GGWCC 1 cut(s) 121
BaeI ACNNNNGTAYC 2 cut(s) 689, 722
BalI TGGCCA 1 cut(s) 568
BanII GRGCYC 1 cut(s) 67
BauI CACGAG 1 cut(s) 505
Bbv12I GWGCWC 2 cut(s) 67, 376
BbvCI CCTCAGC 1 cut(s) 1053
BbvI GCAGC 2 cut(s) 723, 1135
BccI CCATC 4 cut(s) 164, 169, 1478, 1479
BcgI CGANNNNNNTGC 2 cut(s) 634, 668
BciT130I CCWGG 1 cut(s) 1354
BclI TGATCA 2 cut(s) 1273, 1338
BcoDI GTCTC 3 cut(s) 779, 1023, 1076
BfaI CTAG 2 cut(s) 816, 1145
BfmI CTRYAG 1 cut(s) 984
BisI GCNGC 4 cut(s) 220, 737, 1124, 1393
BlsI GCNGC 4 cut(s) 221, 738, 1125, 1394
BmcAI AGTACT 1 cut(s) 1345
Bme1390I CCNGG 1 cut(s) 1354
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 232, 1469
BmrFI CCNGG 1 cut(s) 1354
BmrI ACTGGG 2 cut(s) 186, 265
BmsI GCATC 2 cut(s) 399, 628
BmtI GCTAGC 1 cut(s) 819
BmuI ACTGGG 2 cut(s) 186, 265
BpmI CTGGAG 1 cut(s) 1332
Bpu10I CCTNAGC 2 cut(s) 666, 1053
Bpu14I TTCGAA 2 cut(s) 1006, 1384
BpuEI CTTGAG 2 cut(s) 444, 548
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 664, 694
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse1I ACTGG 5 cut(s) 37, 192, 232, 271, 1514
Bse3DI GCAATG 2 cut(s) 377, 1106
BseBI CCWGG 1 cut(s) 1354
BseGI GGATG 3 cut(s) 156, 161, 1489
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMI GCAATG 2 cut(s) 377, 1106
BseMII CTCAG 3 cut(s) 251, 1044, 1122
BseNI ACTGG 5 cut(s) 37, 192, 232, 271, 1514
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 2 cut(s) 723, 1135
BsgI GTGCAG 1 cut(s) 160
Bsh1236I CGCG 3 cut(s) 821, 1018, 1050
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 3 cut(s) 568, 1088, 1295
BsiEI CGRYCG 1 cut(s) 658
BsiHKAI GWGCWC 2 cut(s) 67, 376
BsiSI CCGG 1 cut(s) 884
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 3 cut(s) 779, 1023, 1076
BsmI GAATGC 2 cut(s) 666, 688
BsnI GGCC 3 cut(s) 568, 1088, 1295
Bsp119I TTCGAA 2 cut(s) 1006, 1384
Bsp1286I GDGCHC 2 cut(s) 67, 376
Bsp143I GATC 7 cut(s) 655, 1045, 1075, 1273, 1338, 1428, 1446
BspACI CCGC 9 cut(s) 220, 471, 670, 710, 821, 1018, 1117, 1392, 1465
BspANI GGCC 3 cut(s) 568, 1088, 1295
BspCNI CTCAG 3 cut(s) 250, 1045, 1123
BspFNI CGCG 3 cut(s) 821, 1018, 1050
BspHI TCATGA 2 cut(s) 547, 1264
BspLI GGNNCC 2 cut(s) 232, 1469
BspMAI CTGCAG 1 cut(s) 988
BspOI GCTAGC 1 cut(s) 819
BspPI GGATC 1 cut(s) 1070
BspQI GCTCTTC 1 cut(s) 1008
BspT104I TTCGAA 2 cut(s) 1006, 1384
BsrDI GCAATG 2 cut(s) 377, 1106
BsrI ACTGG 5 cut(s) 37, 192, 232, 271, 1514
BssMI GATC 7 cut(s) 655, 1045, 1075, 1273, 1338, 1428, 1446
BssSI CACGAG 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 505
Bst2UI CCWGG 1 cut(s) 1354
Bst4CI ACNGT 2 cut(s) 344, 564
Bst6I CTCTTC 4 cut(s) 27, 117, 148, 1008
BstAPI GCANNNNNTGC 1 cut(s) 1297
BstBI TTCGAA 2 cut(s) 1006, 1384
BstC8I GCNNGC 6 cut(s) 317, 643, 817, 1234, 1293, 1313
BstDEI CTNAG 6 cut(s) 237, 666, 1053, 1083, 1131, 1364
BstF5I GGATG 3 cut(s) 156, 161, 1489
BstFNI CGCG 3 cut(s) 821, 1018, 1050
BstHHI GCGC 3 cut(s) 821, 1018, 1052
BstKTI GATC 7 cut(s) 658, 1048, 1078, 1276, 1341, 1431, 1449
BstMAI GTCTC 3 cut(s) 779, 1023, 1076
BstMBI GATC 7 cut(s) 655, 1045, 1075, 1273, 1338, 1428, 1446
BstMCI CGRYCG 1 cut(s) 658
BstMWI GCNNNNNNNGC 5 cut(s) 228, 976, 1123, 1297, 1398
BstNI CCWGG 1 cut(s) 1354
BstNSI RCATGY 2 cut(s) 813, 1144
BstSCI CCNGG 1 cut(s) 1352
BstSFI CTRYAG 1 cut(s) 984
BstUI CGCG 3 cut(s) 821, 1018, 1050
BstV1I GCAGC 2 cut(s) 723, 1135
BsuRI GGCC 3 cut(s) 568, 1088, 1295
BtgZI GCGATG 1 cut(s) 200
BtsCI GGATG 3 cut(s) 156, 161, 1489
BtsIMutI CAGTG 3 cut(s) 199, 225, 569
Cac8I GCNNGC 6 cut(s) 317, 643, 817, 1234, 1293, 1313
CciI TCATGA 2 cut(s) 547, 1264
CfoI GCGC 3 cut(s) 821, 1018, 1052
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 4 cut(s) 212, 274, 307, 1344
CspCI CAANNNNNGTGG 2 cut(s) 381, 416
CviAII CATG 7 cut(s) 548, 701, 810, 1025, 1141, 1265, 1420
CviQI GTAC 4 cut(s) 212, 274, 307, 1344
DdeI CTNAG 6 cut(s) 237, 666, 1053, 1083, 1131, 1364
DpnI GATC 7 cut(s) 657, 1047, 1077, 1275, 1340, 1430, 1448
DpnII GATC 7 cut(s) 655, 1045, 1075, 1273, 1338, 1428, 1446
EaeI YGGCCR 1 cut(s) 566
Eam1104I CTCTTC 4 cut(s) 27, 117, 148, 1008
EarI CTCTTC 4 cut(s) 27, 117, 148, 1008
Ecl136II GAGCTC 1 cut(s) 65
Eco147I AGGCCT 1 cut(s) 1295
Eco24I GRGCYC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 8, 1223
EcoICRI GAGCTC 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 953
EcoRII CCWGG 1 cut(s) 1352
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 7 cut(s) 551, 704, 813, 1028, 1144, 1268, 1423
FatI CATG 7 cut(s) 547, 700, 809, 1024, 1140, 1264, 1419
FauNDI CATATG 1 cut(s) 1192
FbaI TGATCA 2 cut(s) 1273, 1338
Fnu4HI GCNGC 4 cut(s) 220, 737, 1124, 1393
FokI GGATG 3 cut(s) 143, 148, 1496
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 4 cut(s) 220, 737, 1124, 1393
FspBI CTAG 2 cut(s) 816, 1145
GlaI GCGC 3 cut(s) 820, 1017, 1051
GluI GCNGC 4 cut(s) 220, 737, 1124, 1393
GsuI CTGGAG 1 cut(s) 1332
HaeIII GGCC 3 cut(s) 568, 1088, 1295
HapII CCGG 1 cut(s) 884
HhaI GCGC 3 cut(s) 821, 1018, 1052
Hin1II CATG 7 cut(s) 551, 704, 813, 1028, 1144, 1268, 1423
Hin6I GCGC 3 cut(s) 819, 1016, 1050
HinP1I GCGC 3 cut(s) 819, 1016, 1050
HincII GTYRAC 1 cut(s) 843
HindII GTYRAC 1 cut(s) 843
HinfI GANTC 6 cut(s) 503, 544, 604, 854, 1021, 1378
HpaI GTTAAC 1 cut(s) 843
HpaII CCGG 1 cut(s) 884
HphI GGTGA 4 cut(s) 356, 724, 737, 1174
Hpy166II GTNNAC 1 cut(s) 843
Hpy188I TCNGA 6 cut(s) 12, 62, 69, 1132, 1176, 1338
Hpy188III TCNNGA 6 cut(s) 86, 461, 548, 1073, 1265, 1277
Hpy8I GTNNAC 1 cut(s) 843
HpyAV CCTTC 6 cut(s) 126, 147, 157, 830, 1089, 1198
HpyCH4III ACNGT 2 cut(s) 344, 564
HpyCH4V TGCA 8 cut(s) 177, 185, 420, 448, 641, 986, 1300, 1409
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 976, 1123, 1297, 1398
HpyF3I CTNAG 6 cut(s) 237, 666, 1053, 1083, 1131, 1364
Hsp92II CATG 7 cut(s) 551, 704, 813, 1028, 1144, 1268, 1423
HspAI GCGC 3 cut(s) 819, 1016, 1050
Ksp22I TGATCA 2 cut(s) 1273, 1338
KspAI GTTAAC 1 cut(s) 843
Kzo9I GATC 7 cut(s) 655, 1045, 1075, 1273, 1338, 1428, 1446
LguI GCTCTTC 1 cut(s) 1008
LmnI GCTCC 5 cut(s) 236, 266, 379, 1441, 1499
Lsp1109I GCAGC 2 cut(s) 723, 1135
LweI GCATC 2 cut(s) 399, 628
MaeI CTAG 2 cut(s) 816, 1145
MaeIII GTNAC 1 cut(s) 509
MalI GATC 7 cut(s) 657, 1047, 1077, 1275, 1340, 1430, 1448
MboI GATC 7 cut(s) 655, 1045, 1075, 1273, 1338, 1428, 1446
MfeI CAATTG 1 cut(s) 1323
MhlI GDGCHC 2 cut(s) 67, 376
MlsI TGGCCA 1 cut(s) 568
MluCI AATT 7 cut(s) 265, 364, 599, 760, 953, 1323, 1371
MluNI TGGCCA 1 cut(s) 568
MlyI GAGTC 2 cut(s) 497, 863
MmeI TCCRAC 1 cut(s) 101
Mox20I TGGCCA 1 cut(s) 568
MscI TGGCCA 1 cut(s) 568
MseI TTAA 5 cut(s) 353, 387, 842, 1137, 1374
MslI CAYNNNNRTG 2 cut(s) 705, 939
Msp20I TGGCCA 1 cut(s) 568
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 1 cut(s) 884
MspR9I CCNGG 1 cut(s) 1354
MunI CAATTG 1 cut(s) 1323
Mva1269I GAATGC 2 cut(s) 666, 688
MvaI CCWGG 1 cut(s) 1354
MvnI CGCG 3 cut(s) 821, 1018, 1050
MwoI GCNNNNNNNGC 5 cut(s) 228, 976, 1123, 1297, 1398
NdeI CATATG 1 cut(s) 1192
NdeII GATC 7 cut(s) 655, 1045, 1075, 1273, 1338, 1428, 1446
NheI GCTAGC 1 cut(s) 815
NlaIII CATG 7 cut(s) 551, 704, 813, 1028, 1144, 1268, 1423
NlaIV GGNNCC 2 cut(s) 232, 1469
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 2 cut(s) 813, 1144
NspV TTCGAA 2 cut(s) 1006, 1384
PagI TCATGA 2 cut(s) 547, 1264
PceI AGGCCT 1 cut(s) 1295
PciSI GCTCTTC 1 cut(s) 1008
PctI GAATGC 2 cut(s) 666, 688
PfeI GAWTC 4 cut(s) 544, 604, 1021, 1378
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 4 cut(s) 221, 738, 1125, 1394
Ple19I CGATCG 1 cut(s) 658
PleI GAGTC 2 cut(s) 497, 862
PpsI GAGTC 2 cut(s) 497, 862
Psp124BI GAGCTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 1352
PspGI CCWGG 1 cut(s) 1352
PspN4I GGNNCC 2 cut(s) 232, 1469
PspPI GGNCC 1 cut(s) 121
PstI CTGCAG 1 cut(s) 988
PvuI CGATCG 1 cut(s) 658
RsaI GTAC 4 cut(s) 213, 275, 308, 1345
RsaNI GTAC 4 cut(s) 212, 274, 307, 1344
RseI CAYNNNNRTG 2 cut(s) 705, 939
SacI GAGCTC 1 cut(s) 67
SapI GCTCTTC 1 cut(s) 1008
SaqAI TTAA 5 cut(s) 353, 387, 842, 1137, 1374
SatI GCNGC 4 cut(s) 220, 737, 1124, 1393
Sau3AI GATC 7 cut(s) 655, 1045, 1075, 1273, 1338, 1428, 1446
Sau96I GGNCC 1 cut(s) 121
ScaI AGTACT 1 cut(s) 1345
SchI GAGTC 2 cut(s) 497, 863
ScrFI CCNGG 1 cut(s) 1354
SduI GDGCHC 2 cut(s) 67, 376
SfaNI GCATC 2 cut(s) 399, 628
SfcI CTRYAG 1 cut(s) 984
SfuI TTCGAA 2 cut(s) 1006, 1384
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 705, 939
SmlI CTYRAG 2 cut(s) 459, 527
SmoI CTYRAG 2 cut(s) 459, 527
Sse9I AATT 7 cut(s) 265, 364, 599, 760, 953, 1323, 1371
SseBI AGGCCT 1 cut(s) 1295
SsiI CCGC 9 cut(s) 220, 471, 670, 710, 821, 1018, 1117, 1392, 1465
SspMI CTAG 2 cut(s) 816, 1145
SstI GAGCTC 1 cut(s) 67
StuI AGGCCT 1 cut(s) 1295
StyD4I CCNGG 1 cut(s) 1352
TaaI ACNGT 2 cut(s) 344, 564
TaqI TCGA 8 cut(s) 518, 654, 658, 852, 857, 1006, 1074, 1384
TaqII GACCGA 1 cut(s) 109
TasI AATT 7 cut(s) 265, 364, 599, 760, 953, 1323, 1371
TatI WGTACW 3 cut(s) 211, 273, 1343
TauI GCSGC 2 cut(s) 222, 1395
TfiI GAWTC 4 cut(s) 544, 604, 1021, 1378
Tru1I TTAA 5 cut(s) 353, 387, 842, 1137, 1374
Tru9I TTAA 5 cut(s) 353, 387, 842, 1137, 1374
TscAI CASTG 3 cut(s) 199, 232, 569
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 2 cut(s) 736, 1123
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 7 cut(s) 342, 536, 572, 875, 946, 1013, 1253
TspRI CASTG 3 cut(s) 199, 232, 569
Van91I CCANNNNNTGG 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 3 cut(s) 364, 760, 953
XceI RCATGY 2 cut(s) 813, 1144
XspI CTAG 2 cut(s) 816, 1145
ZrmI AGTACT 1 cut(s) 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.