Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g07130 |
| malus_domestica | MD02G1075300.v1.1 MD02G1075700.v1.1 MD15G1204400.v1.1 |
| prunus_persica | Prupe.7G212800_v2.0.a1 |
| pyrus_communis | pycom02g05940 pycom15g18120 |
| rosa_chinensis | RchiOBHm_Chr2g0093011 |
| rosa_laevigata | RLG00000016359 |
| rosa_multiflora | Rmu_sc0000965.1_g000023 |
| rosa_roxburghii | Rroxscaffold_2G00148620 |
| rosa_rugosa | Rorug02G0031500 |
| rosa_samantha | Rh2AG077200 Rh2BG078600 Rh2CG080800 Rh2DG076000 |
| rosa_wichuraiana | Rw2G006900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 575 |
| AccII | CGCG | 3 cut(s) | 821, 1018, 1050 |
| AciI | CCGC | 9 cut(s) | 220, 471, 670, 710, 821, 1018, 1117, 1392, 1465 |
| AclWI | GGATC | 1 cut(s) | 1070 |
| AcoI | YGGCCR | 1 cut(s) | 566 |
| AcsI | RAATTY | 3 cut(s) | 364, 760, 953 |
| AcuI | CTGAAG | 2 cut(s) | 8, 1223 |
| AfaI | GTAC | 4 cut(s) | 213, 275, 308, 1345 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 575 |
| AjnI | CCWGG | 1 cut(s) | 1352 |
| AluBI | AGCT | 5 cut(s) | 65, 516, 827, 1039, 1444 |
| AluI | AGCT | 5 cut(s) | 65, 516, 827, 1039, 1444 |
| Alw21I | GWGCWC | 2 cut(s) | 67, 376 |
| Alw26I | GTCTC | 3 cut(s) | 779, 1023, 1076 |
| AlwI | GGATC | 1 cut(s) | 1070 |
| AoxI | GGCC | 3 cut(s) | 566, 1086, 1293 |
| ApeKI | GCWGC | 2 cut(s) | 736, 1123 |
| ApoI | RAATTY | 3 cut(s) | 364, 760, 953 |
| AspLEI | GCGC | 3 cut(s) | 821, 1018, 1052 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 4 cut(s) | 356, 724, 737, 1174 |
| AsuII | TTCGAA | 2 cut(s) | 1006, 1384 |
| AsuNHI | GCTAGC | 1 cut(s) | 815 |
| AvaII | GGWCC | 1 cut(s) | 121 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 689, 722 |
| BalI | TGGCCA | 1 cut(s) | 568 |
| BanII | GRGCYC | 1 cut(s) | 67 |
| BauI | CACGAG | 1 cut(s) | 505 |
| Bbv12I | GWGCWC | 2 cut(s) | 67, 376 |
| BbvCI | CCTCAGC | 1 cut(s) | 1053 |
| BbvI | GCAGC | 2 cut(s) | 723, 1135 |
| BccI | CCATC | 4 cut(s) | 164, 169, 1478, 1479 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 634, 668 |
| BciT130I | CCWGG | 1 cut(s) | 1354 |
| BclI | TGATCA | 2 cut(s) | 1273, 1338 |
| BcoDI | GTCTC | 3 cut(s) | 779, 1023, 1076 |
| BfaI | CTAG | 2 cut(s) | 816, 1145 |
| BfmI | CTRYAG | 1 cut(s) | 984 |
| BisI | GCNGC | 4 cut(s) | 220, 737, 1124, 1393 |
| BlsI | GCNGC | 4 cut(s) | 221, 738, 1125, 1394 |
| BmcAI | AGTACT | 1 cut(s) | 1345 |
| Bme1390I | CCNGG | 1 cut(s) | 1354 |
| Bme18I | GGWCC | 1 cut(s) | 121 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmiI | GGNNCC | 2 cut(s) | 232, 1469 |
| BmrFI | CCNGG | 1 cut(s) | 1354 |
| BmrI | ACTGGG | 2 cut(s) | 186, 265 |
| BmsI | GCATC | 2 cut(s) | 399, 628 |
| BmtI | GCTAGC | 1 cut(s) | 819 |
| BmuI | ACTGGG | 2 cut(s) | 186, 265 |
| BpmI | CTGGAG | 1 cut(s) | 1332 |
| Bpu10I | CCTNAGC | 2 cut(s) | 666, 1053 |
| Bpu14I | TTCGAA | 2 cut(s) | 1006, 1384 |
| BpuEI | CTTGAG | 2 cut(s) | 444, 548 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 215, 245, 664, 694 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 575 |
| Bse1I | ACTGG | 5 cut(s) | 37, 192, 232, 271, 1514 |
| Bse3DI | GCAATG | 2 cut(s) | 377, 1106 |
| BseBI | CCWGG | 1 cut(s) | 1354 |
| BseGI | GGATG | 3 cut(s) | 156, 161, 1489 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 575 |
| BseMI | GCAATG | 2 cut(s) | 377, 1106 |
| BseMII | CTCAG | 3 cut(s) | 251, 1044, 1122 |
| BseNI | ACTGG | 5 cut(s) | 37, 192, 232, 271, 1514 |
| BseRI | GAGGAG | 1 cut(s) | 223 |
| BseXI | GCAGC | 2 cut(s) | 723, 1135 |
| BsgI | GTGCAG | 1 cut(s) | 160 |
| Bsh1236I | CGCG | 3 cut(s) | 821, 1018, 1050 |
| Bsh1285I | CGRYCG | 1 cut(s) | 658 |
| BshFI | GGCC | 3 cut(s) | 568, 1088, 1295 |
| BsiEI | CGRYCG | 1 cut(s) | 658 |
| BsiHKAI | GWGCWC | 2 cut(s) | 67, 376 |
| BsiSI | CCGG | 1 cut(s) | 884 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 575 |
| BsmAI | GTCTC | 3 cut(s) | 779, 1023, 1076 |
| BsmI | GAATGC | 2 cut(s) | 666, 688 |
| BsnI | GGCC | 3 cut(s) | 568, 1088, 1295 |
| Bsp119I | TTCGAA | 2 cut(s) | 1006, 1384 |
| Bsp1286I | GDGCHC | 2 cut(s) | 67, 376 |
| Bsp143I | GATC | 7 cut(s) | 655, 1045, 1075, 1273, 1338, 1428, 1446 |
| BspACI | CCGC | 9 cut(s) | 220, 471, 670, 710, 821, 1018, 1117, 1392, 1465 |
| BspANI | GGCC | 3 cut(s) | 568, 1088, 1295 |
| BspCNI | CTCAG | 3 cut(s) | 250, 1045, 1123 |
| BspFNI | CGCG | 3 cut(s) | 821, 1018, 1050 |
| BspHI | TCATGA | 2 cut(s) | 547, 1264 |
| BspLI | GGNNCC | 2 cut(s) | 232, 1469 |
| BspMAI | CTGCAG | 1 cut(s) | 988 |
| BspOI | GCTAGC | 1 cut(s) | 819 |
| BspPI | GGATC | 1 cut(s) | 1070 |
| BspQI | GCTCTTC | 1 cut(s) | 1008 |
| BspT104I | TTCGAA | 2 cut(s) | 1006, 1384 |
| BsrDI | GCAATG | 2 cut(s) | 377, 1106 |
| BsrI | ACTGG | 5 cut(s) | 37, 192, 232, 271, 1514 |
| BssMI | GATC | 7 cut(s) | 655, 1045, 1075, 1273, 1338, 1428, 1446 |
| BssSI | CACGAG | 1 cut(s) | 505 |
| Bst2BI | CACGAG | 1 cut(s) | 505 |
| Bst2UI | CCWGG | 1 cut(s) | 1354 |
| Bst4CI | ACNGT | 2 cut(s) | 344, 564 |
| Bst6I | CTCTTC | 4 cut(s) | 27, 117, 148, 1008 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1297 |
| BstBI | TTCGAA | 2 cut(s) | 1006, 1384 |
| BstC8I | GCNNGC | 6 cut(s) | 317, 643, 817, 1234, 1293, 1313 |
| BstDEI | CTNAG | 6 cut(s) | 237, 666, 1053, 1083, 1131, 1364 |
| BstF5I | GGATG | 3 cut(s) | 156, 161, 1489 |
| BstFNI | CGCG | 3 cut(s) | 821, 1018, 1050 |
| BstHHI | GCGC | 3 cut(s) | 821, 1018, 1052 |
| BstKTI | GATC | 7 cut(s) | 658, 1048, 1078, 1276, 1341, 1431, 1449 |
| BstMAI | GTCTC | 3 cut(s) | 779, 1023, 1076 |
| BstMBI | GATC | 7 cut(s) | 655, 1045, 1075, 1273, 1338, 1428, 1446 |
| BstMCI | CGRYCG | 1 cut(s) | 658 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 228, 976, 1123, 1297, 1398 |
| BstNI | CCWGG | 1 cut(s) | 1354 |
| BstNSI | RCATGY | 2 cut(s) | 813, 1144 |
| BstSCI | CCNGG | 1 cut(s) | 1352 |
| BstSFI | CTRYAG | 1 cut(s) | 984 |
| BstUI | CGCG | 3 cut(s) | 821, 1018, 1050 |
| BstV1I | GCAGC | 2 cut(s) | 723, 1135 |
| BsuRI | GGCC | 3 cut(s) | 568, 1088, 1295 |
| BtgZI | GCGATG | 1 cut(s) | 200 |
| BtsCI | GGATG | 3 cut(s) | 156, 161, 1489 |
| BtsIMutI | CAGTG | 3 cut(s) | 199, 225, 569 |
| Cac8I | GCNNGC | 6 cut(s) | 317, 643, 817, 1234, 1293, 1313 |
| CciI | TCATGA | 2 cut(s) | 547, 1264 |
| CfoI | GCGC | 3 cut(s) | 821, 1018, 1052 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| Csp6I | GTAC | 4 cut(s) | 212, 274, 307, 1344 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 381, 416 |
| CviAII | CATG | 7 cut(s) | 548, 701, 810, 1025, 1141, 1265, 1420 |
| CviQI | GTAC | 4 cut(s) | 212, 274, 307, 1344 |
| DdeI | CTNAG | 6 cut(s) | 237, 666, 1053, 1083, 1131, 1364 |
| DpnI | GATC | 7 cut(s) | 657, 1047, 1077, 1275, 1340, 1430, 1448 |
| DpnII | GATC | 7 cut(s) | 655, 1045, 1075, 1273, 1338, 1428, 1446 |
| EaeI | YGGCCR | 1 cut(s) | 566 |
| Eam1104I | CTCTTC | 4 cut(s) | 27, 117, 148, 1008 |
| EarI | CTCTTC | 4 cut(s) | 27, 117, 148, 1008 |
| Ecl136II | GAGCTC | 1 cut(s) | 65 |
| Eco147I | AGGCCT | 1 cut(s) | 1295 |
| Eco24I | GRGCYC | 1 cut(s) | 67 |
| Eco47I | GGWCC | 1 cut(s) | 121 |
| Eco53kI | GAGCTC | 1 cut(s) | 65 |
| Eco57I | CTGAAG | 2 cut(s) | 8, 1223 |
| EcoICRI | GAGCTC | 1 cut(s) | 65 |
| EcoRI | GAATTC | 1 cut(s) | 953 |
| EcoRII | CCWGG | 1 cut(s) | 1352 |
| EcoT38I | GRGCYC | 1 cut(s) | 67 |
| FaeI | CATG | 7 cut(s) | 551, 704, 813, 1028, 1144, 1268, 1423 |
| FatI | CATG | 7 cut(s) | 547, 700, 809, 1024, 1140, 1264, 1419 |
| FauNDI | CATATG | 1 cut(s) | 1192 |
| FbaI | TGATCA | 2 cut(s) | 1273, 1338 |
| Fnu4HI | GCNGC | 4 cut(s) | 220, 737, 1124, 1393 |
| FokI | GGATG | 3 cut(s) | 143, 148, 1496 |
| FriOI | GRGCYC | 1 cut(s) | 67 |
| Fsp4HI | GCNGC | 4 cut(s) | 220, 737, 1124, 1393 |
| FspBI | CTAG | 2 cut(s) | 816, 1145 |
| GlaI | GCGC | 3 cut(s) | 820, 1017, 1051 |
| GluI | GCNGC | 4 cut(s) | 220, 737, 1124, 1393 |
| GsuI | CTGGAG | 1 cut(s) | 1332 |
| HaeIII | GGCC | 3 cut(s) | 568, 1088, 1295 |
| HapII | CCGG | 1 cut(s) | 884 |
| HhaI | GCGC | 3 cut(s) | 821, 1018, 1052 |
| Hin1II | CATG | 7 cut(s) | 551, 704, 813, 1028, 1144, 1268, 1423 |
| Hin6I | GCGC | 3 cut(s) | 819, 1016, 1050 |
| HinP1I | GCGC | 3 cut(s) | 819, 1016, 1050 |
| HincII | GTYRAC | 1 cut(s) | 843 |
| HindII | GTYRAC | 1 cut(s) | 843 |
| HinfI | GANTC | 6 cut(s) | 503, 544, 604, 854, 1021, 1378 |
| HpaI | GTTAAC | 1 cut(s) | 843 |
| HpaII | CCGG | 1 cut(s) | 884 |
| HphI | GGTGA | 4 cut(s) | 356, 724, 737, 1174 |
| Hpy166II | GTNNAC | 1 cut(s) | 843 |
| Hpy188I | TCNGA | 6 cut(s) | 12, 62, 69, 1132, 1176, 1338 |
| Hpy188III | TCNNGA | 6 cut(s) | 86, 461, 548, 1073, 1265, 1277 |
| Hpy8I | GTNNAC | 1 cut(s) | 843 |
| HpyAV | CCTTC | 6 cut(s) | 126, 147, 157, 830, 1089, 1198 |
| HpyCH4III | ACNGT | 2 cut(s) | 344, 564 |
| HpyCH4V | TGCA | 8 cut(s) | 177, 185, 420, 448, 641, 986, 1300, 1409 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 228, 976, 1123, 1297, 1398 |
| HpyF3I | CTNAG | 6 cut(s) | 237, 666, 1053, 1083, 1131, 1364 |
| Hsp92II | CATG | 7 cut(s) | 551, 704, 813, 1028, 1144, 1268, 1423 |
| HspAI | GCGC | 3 cut(s) | 819, 1016, 1050 |
| Ksp22I | TGATCA | 2 cut(s) | 1273, 1338 |
| KspAI | GTTAAC | 1 cut(s) | 843 |
| Kzo9I | GATC | 7 cut(s) | 655, 1045, 1075, 1273, 1338, 1428, 1446 |
| LguI | GCTCTTC | 1 cut(s) | 1008 |
| LmnI | GCTCC | 5 cut(s) | 236, 266, 379, 1441, 1499 |
| Lsp1109I | GCAGC | 2 cut(s) | 723, 1135 |
| LweI | GCATC | 2 cut(s) | 399, 628 |
| MaeI | CTAG | 2 cut(s) | 816, 1145 |
| MaeIII | GTNAC | 1 cut(s) | 509 |
| MalI | GATC | 7 cut(s) | 657, 1047, 1077, 1275, 1340, 1430, 1448 |
| MboI | GATC | 7 cut(s) | 655, 1045, 1075, 1273, 1338, 1428, 1446 |
| MfeI | CAATTG | 1 cut(s) | 1323 |
| MhlI | GDGCHC | 2 cut(s) | 67, 376 |
| MlsI | TGGCCA | 1 cut(s) | 568 |
| MluCI | AATT | 7 cut(s) | 265, 364, 599, 760, 953, 1323, 1371 |
| MluNI | TGGCCA | 1 cut(s) | 568 |
| MlyI | GAGTC | 2 cut(s) | 497, 863 |
| MmeI | TCCRAC | 1 cut(s) | 101 |
| Mox20I | TGGCCA | 1 cut(s) | 568 |
| MscI | TGGCCA | 1 cut(s) | 568 |
| MseI | TTAA | 5 cut(s) | 353, 387, 842, 1137, 1374 |
| MslI | CAYNNNNRTG | 2 cut(s) | 705, 939 |
| Msp20I | TGGCCA | 1 cut(s) | 568 |
| MspA1I | CMGCKG | 1 cut(s) | 473 |
| MspI | CCGG | 1 cut(s) | 884 |
| MspR9I | CCNGG | 1 cut(s) | 1354 |
| MunI | CAATTG | 1 cut(s) | 1323 |
| Mva1269I | GAATGC | 2 cut(s) | 666, 688 |
| MvaI | CCWGG | 1 cut(s) | 1354 |
| MvnI | CGCG | 3 cut(s) | 821, 1018, 1050 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 228, 976, 1123, 1297, 1398 |
| NdeI | CATATG | 1 cut(s) | 1192 |
| NdeII | GATC | 7 cut(s) | 655, 1045, 1075, 1273, 1338, 1428, 1446 |
| NheI | GCTAGC | 1 cut(s) | 815 |
| NlaIII | CATG | 7 cut(s) | 551, 704, 813, 1028, 1144, 1268, 1423 |
| NlaIV | GGNNCC | 2 cut(s) | 232, 1469 |
| NmuCI | GTSAC | 1 cut(s) | 509 |
| NspI | RCATGY | 2 cut(s) | 813, 1144 |
| NspV | TTCGAA | 2 cut(s) | 1006, 1384 |
| PagI | TCATGA | 2 cut(s) | 547, 1264 |
| PceI | AGGCCT | 1 cut(s) | 1295 |
| PciSI | GCTCTTC | 1 cut(s) | 1008 |
| PctI | GAATGC | 2 cut(s) | 666, 688 |
| PfeI | GAWTC | 4 cut(s) | 544, 604, 1021, 1378 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 575 |
| PkrI | GCNGC | 4 cut(s) | 221, 738, 1125, 1394 |
| Ple19I | CGATCG | 1 cut(s) | 658 |
| PleI | GAGTC | 2 cut(s) | 497, 862 |
| PpsI | GAGTC | 2 cut(s) | 497, 862 |
| Psp124BI | GAGCTC | 1 cut(s) | 67 |
| Psp6I | CCWGG | 1 cut(s) | 1352 |
| PspGI | CCWGG | 1 cut(s) | 1352 |
| PspN4I | GGNNCC | 2 cut(s) | 232, 1469 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| PstI | CTGCAG | 1 cut(s) | 988 |
| PvuI | CGATCG | 1 cut(s) | 658 |
| RsaI | GTAC | 4 cut(s) | 213, 275, 308, 1345 |
| RsaNI | GTAC | 4 cut(s) | 212, 274, 307, 1344 |
| RseI | CAYNNNNRTG | 2 cut(s) | 705, 939 |
| SacI | GAGCTC | 1 cut(s) | 67 |
| SapI | GCTCTTC | 1 cut(s) | 1008 |
| SaqAI | TTAA | 5 cut(s) | 353, 387, 842, 1137, 1374 |
| SatI | GCNGC | 4 cut(s) | 220, 737, 1124, 1393 |
| Sau3AI | GATC | 7 cut(s) | 655, 1045, 1075, 1273, 1338, 1428, 1446 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| ScaI | AGTACT | 1 cut(s) | 1345 |
| SchI | GAGTC | 2 cut(s) | 497, 863 |
| ScrFI | CCNGG | 1 cut(s) | 1354 |
| SduI | GDGCHC | 2 cut(s) | 67, 376 |
| SfaNI | GCATC | 2 cut(s) | 399, 628 |
| SfcI | CTRYAG | 1 cut(s) | 984 |
| SfuI | TTCGAA | 2 cut(s) | 1006, 1384 |
| SinI | GGWCC | 1 cut(s) | 121 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 705, 939 |
| SmlI | CTYRAG | 2 cut(s) | 459, 527 |
| SmoI | CTYRAG | 2 cut(s) | 459, 527 |
| Sse9I | AATT | 7 cut(s) | 265, 364, 599, 760, 953, 1323, 1371 |
| SseBI | AGGCCT | 1 cut(s) | 1295 |
| SsiI | CCGC | 9 cut(s) | 220, 471, 670, 710, 821, 1018, 1117, 1392, 1465 |
| SspMI | CTAG | 2 cut(s) | 816, 1145 |
| SstI | GAGCTC | 1 cut(s) | 67 |
| StuI | AGGCCT | 1 cut(s) | 1295 |
| StyD4I | CCNGG | 1 cut(s) | 1352 |
| TaaI | ACNGT | 2 cut(s) | 344, 564 |
| TaqI | TCGA | 8 cut(s) | 518, 654, 658, 852, 857, 1006, 1074, 1384 |
| TaqII | GACCGA | 1 cut(s) | 109 |
| TasI | AATT | 7 cut(s) | 265, 364, 599, 760, 953, 1323, 1371 |
| TatI | WGTACW | 3 cut(s) | 211, 273, 1343 |
| TauI | GCSGC | 2 cut(s) | 222, 1395 |
| TfiI | GAWTC | 4 cut(s) | 544, 604, 1021, 1378 |
| Tru1I | TTAA | 5 cut(s) | 353, 387, 842, 1137, 1374 |
| Tru9I | TTAA | 5 cut(s) | 353, 387, 842, 1137, 1374 |
| TscAI | CASTG | 3 cut(s) | 199, 232, 569 |
| TseFI | GTSAC | 1 cut(s) | 509 |
| TseI | GCWGC | 2 cut(s) | 736, 1123 |
| Tsp45I | GTSAC | 1 cut(s) | 509 |
| TspDTI | ATGAA | 7 cut(s) | 342, 536, 572, 875, 946, 1013, 1253 |
| TspRI | CASTG | 3 cut(s) | 199, 232, 569 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 575 |
| VpaK11BI | GGWCC | 1 cut(s) | 121 |
| XapI | RAATTY | 3 cut(s) | 364, 760, 953 |
| XceI | RCATGY | 2 cut(s) | 813, 1144 |
| XspI | CTAG | 2 cut(s) | 816, 1145 |
| ZrmI | AGTACT | 1 cut(s) | 1345 |