Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014633

Physical Location & Seq

Genomic Coordinates Reverse (-)

5888425 .. 5889885

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016359

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGCCTCTGTCACTTCGCTTCAGCCAACCAACTCCATAATCTCTTCTTCTCGATTCAAACCTCCAAACCCTGATCATAATTTCTCGATTCACCTCTCCCTGAAAACCCAACCTTTCCCCTCCTCCAACCCCTCCCCATCCAAACCATTTCGCTCTTTCGCAGTCAACAATCCCAGCATCAATCGCCGCCGCTACGACCGCTCCTCCCAGCCGCAAACCACCAGGCCTCGCTCCAAACCCGTCTACAAGACCCAACCTTTACAAAAGAACAGCAACTACCCCAACCCAAATGAACCCACAAATGAGTCCAACGTTCAAAATGTGAGTGACCCATTACGAAAAGATGTGGACTTGATGGGTTTGTGCAAGGAGGGTAAGGTCGAAGAGGCCTTGGAGTATATGGGTCATGGCGTTTCTGCTGATTATGGTGTTTTCTGTATGTTACTGGAGTCCTGTGACGACTTGAAGGTTGGGAGAAAGATTGACCGGTACTTGAAGTTGGCTCCTTTTGGGGGAGATATCGAGTTGAATGTGAAATTGATCGAAATGTATGGGAGGTGTGGGAGTATGAGAGATGCACGCAAGGTGTTTGATAGAATGCCTGAGAGAAATTTGAGTTTGTGGCATTCGATGATCAATGGGTATGCTTTGAATGGGAAAGGGGGTGAGGGGGTGCTGTTGTTTGAGCAAATGAGGAGTTCAGGGTTGAAGCCGGACAAGGAGACTGTAAAGGAGGTTTTGGGGGCGTGTGCTAGTGCGGGAGCTGTGGAAGAAGGGCTAACATACTTTGAATCGATGAAGGATGAGTATGGGATTGTGCCTGAGATTGAGCATTATGTAGGGGTTATTAACGTTCTTGGGAAGTCTGGTCATTTGAATGAAGCTGAGGAGTTCATTGCGAAAATGCCATTTGAGCCTACTGCCGAAGTTTGGGAGGCTCTTAGGAACTTGGCGCGAATTCATGGAGATCTTGAGCTTGAAGATCGCGCTGAGGAATTATTGGTCAGTGTTGATCCTTCTAAGTCCAATGCTGATAAAATCCCATTGCCGCTGCGGAAGAAGTACTCAGAGATTAACATGCTAGAGGAGAGGAATATGGTGAGTGAGTATAGGTGTACAGACATATATGGAGAGTCATATGAGCAATCGAAAGGTTTGAGAGGACAGATGAGGGAAGCAGGATATGTGCCGGATACTAGATATGTGCTTCACGACATTGATCAGGAAGCAAAAGAGCAGGCTTTGCAGTATCACAGTGAGCGGTTGGCAATTGCTTATGGTCTGATCAGTACTCCTGCTAGGCAAACTCTAAGGATAATAAAGAACCTTCGAATCTGTGGTGACTGCCACAATGCAATAAAAATCATGTCAAAGATTGTAGGGAGGGAGCTGATTGTTAGGGATAACAAGCGATTCCATCATTTCAAGAATGGGAAATGCTCCTGTGGAGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

487

Amino Acids

55.02

Weight (kDa)

7.17

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	394 - 486	2.8e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07130
malus_domestica	MD02G1075300.v1.1 MD02G1075700.v1.1 MD15G1204400.v1.1
prunus_persica	Prupe.7G212800_v2.0.a1
pyrus_communis	pycom02g05940 pycom15g18120
rosa_chinensis	RchiOBHm_Chr2g0093011
rosa_laevigata	RLG00000016359
rosa_multiflora	Rmu_sc0000965.1_g000023
rosa_roxburghii	Rroxscaffold_2G00148620
rosa_rugosa	Rorug02G0031500
rosa_samantha	Rh2AG077200 Rh2BG078600 Rh2CG080800 Rh2DG076000
rosa_wichuraiana	Rw2G006900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	201, 1261
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	2 cut(s)	955, 987
AciI	CCGC	8 cut(s)	187, 190, 199, 212, 758, 1049, 1054, 1261
AclI	AACGTT	2 cut(s)	312, 852
AclWI	GGATC	1 cut(s)	1007
AcsI	RAATTY	2 cut(s)	610, 957
AcuI	CTGAAG	1 cut(s)	5
AfaI	GTAC	4 cut(s)	491, 1064, 1117, 1291
AfiI	CCNNNNNNNGG	2 cut(s)	512, 930
AgeI	ACCGGT	1 cut(s)	486
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	4 cut(s)	764, 884, 976, 1390
AluI	AGCT	4 cut(s)	764, 884, 976, 1390
Alw26I	GTCTC	1 cut(s)	716
AlwI	GGATC	1 cut(s)	1007
AoxI	GGCC	3 cut(s)	3, 224, 387
ApeKI	GCWGC	1 cut(s)	1051
ApoI	RAATTY	2 cut(s)	610, 957
AsiGI	ACCGGT	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	955, 989
AsuHPI	GGTGA	4 cut(s)	83, 677, 1111, 1352
AsuII	TTCGAA	1 cut(s)	1330
BbvCI	CCTCAGC	2 cut(s)	885, 990
BbvI	GCAGC	1 cut(s)	1038
BccI	CCATC	3 cut(s)	145, 349, 1425
BciT130I	CCWGG	1 cut(s)	223
BciVI	GTATCC	1 cut(s)	1186
BclI	TGATCA	4 cut(s)	73, 633, 1219, 1284
BcoDI	GTCTC	1 cut(s)	716
BfaI	CTAG	4 cut(s)	753, 1082, 1197, 1299
BfuI	GTATCC	1 cut(s)	1186
BglII	AGATCT	1 cut(s)	967
BisI	GCNGC	5 cut(s)	187, 190, 212, 1049, 1052
BlsI	GCNGC	5 cut(s)	188, 191, 213, 1050, 1053
BmcAI	AGTACT	2 cut(s)	1064, 1291
Bme1390I	CCNGG	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	186, 565
BpmI	CTGGAG	1 cut(s)	467
Bpu10I	CCTNAGC	2 cut(s)	885, 990
Bpu14I	TTCGAA	1 cut(s)	1330
BpuEI	CTTGAG	1 cut(s)	992
Bsa29I	ATCGAT	1 cut(s)	794
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	486
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 188, 215, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 930
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	2 cut(s)	450, 1460
Bse3DI	GCAATG	2 cut(s)	894, 1043
BseBI	CCWGG	1 cut(s)	223
BseCI	ATCGAT	1 cut(s)	794
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	137, 808
BseLI	CCNNNNNNNGG	2 cut(s)	512, 930
BseMI	GCAATG	2 cut(s)	894, 1043
BseMII	CTCAG	5 cut(s)	594, 813, 876, 981, 1080
BseNI	ACTGG	2 cut(s)	450, 1460
BseRI	GAGGAG	5 cut(s)	112, 193, 709, 902, 1100
BseXI	GCAGC	1 cut(s)	1038
BseYI	CCCAGC	2 cut(s)	173, 207
Bsh1236I	CGCG	2 cut(s)	955, 987
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	3 cut(s)	5, 226, 389
BshTI	ACCGGT	1 cut(s)	486
BshVI	ATCGAT	1 cut(s)	794
BsiEI	CGRYCG	1 cut(s)	199
BsiSI	CCGG	3 cut(s)	487, 713, 1190
BslI	CCNNNNNNNGG	2 cut(s)	512, 930
BsmAI	GTCTC	1 cut(s)	716
BsmI	GAATGC	2 cut(s)	603, 625
BsnI	GGCC	3 cut(s)	5, 226, 389
Bsp119I	TTCGAA	1 cut(s)	1330
Bsp1407I	TGTACA	1 cut(s)	1115
Bsp143I	GATC	8 cut(s)	73, 540, 633, 967, 982, 1012, 1219, 1284
BspACI	CCGC	8 cut(s)	187, 190, 199, 212, 758, 1049, 1054, 1261
BspANI	GGCC	3 cut(s)	5, 226, 389
BspCNI	CTCAG	5 cut(s)	595, 814, 877, 982, 1079
BspDI	ATCGAT	1 cut(s)	794
BspFNI	CGCG	2 cut(s)	955, 987
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	1 cut(s)	1007
BspT104I	TTCGAA	1 cut(s)	1330
BsrBI	CCGCTC	2 cut(s)	201, 1261
BsrDI	GCAATG	2 cut(s)	894, 1043
BsrFI	RCCGGY	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	1115
BsrI	ACTGG	2 cut(s)	450, 1460
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	8 cut(s)	73, 540, 633, 967, 982, 1012, 1219, 1284
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	727, 1256
Bst6I	CTCTTC	2 cut(s)	49, 378
BstAPI	GCANNNNNTGC	1 cut(s)	1243
BstAUI	TGTACA	1 cut(s)	1115
BstBI	TTCGAA	1 cut(s)	1330
BstC8I	GCNNGC	2 cut(s)	580, 1239
BstDEI	CTNAG	8 cut(s)	603, 822, 885, 941, 990, 1020, 1066, 1310
BstF5I	GGATG	2 cut(s)	137, 808
BstFNI	CGCG	2 cut(s)	955, 987
BstHHI	GCGC	2 cut(s)	955, 989
BstKTI	GATC	8 cut(s)	76, 543, 636, 970, 985, 1015, 1222, 1287
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	8 cut(s)	73, 540, 633, 967, 982, 1012, 1219, 1284
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 198, 913, 1243
BstNI	CCWGG	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	1081
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	2 cut(s)	955, 987
BstV1I	GCAGC	1 cut(s)	1038
BstX2I	RGATCY	1 cut(s)	967
BstYI	RGATCY	1 cut(s)	967
Bsu15I	ATCGAT	1 cut(s)	794
BsuI	GTATCC	1 cut(s)	1186
BsuRI	GGCC	3 cut(s)	5, 226, 389
BsuTUI	ATCGAT	1 cut(s)	794
BtsCI	GGATG	2 cut(s)	137, 808
BtsIMutI	CAGTG	2 cut(s)	1012, 1261
Cac8I	GCNNGC	2 cut(s)	580, 1239
CfoI	GCGC	2 cut(s)	955, 989
Cfr10I	RCCGGY	1 cut(s)	486
ClaI	ATCGAT	1 cut(s)	794
Csp6I	GTAC	4 cut(s)	490, 1063, 1116, 1290
CspAI	ACCGGT	1 cut(s)	486
CviAII	CATG	4 cut(s)	407, 962, 1078, 1366
CviQI	GTAC	4 cut(s)	490, 1063, 1116, 1290
DdeI	CTNAG	8 cut(s)	603, 822, 885, 941, 990, 1020, 1066, 1310
DpnI	GATC	8 cut(s)	75, 542, 635, 969, 984, 1014, 1221, 1286
DpnII	GATC	8 cut(s)	73, 540, 633, 967, 982, 1012, 1219, 1284
Eam1104I	CTCTTC	2 cut(s)	49, 378
EarI	CTCTTC	2 cut(s)	49, 378
Eco130I	CCWWGG	1 cut(s)	390
Eco147I	AGGCCT	2 cut(s)	226, 389
Eco32I	GATATC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	957
EcoRII	CCWGG	1 cut(s)	221
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	4 cut(s)	410, 965, 1081, 1369
FatI	CATG	4 cut(s)	406, 961, 1077, 1365
FauI	CCCGC	1 cut(s)	751
FauNDI	CATATG	1 cut(s)	1138
FbaI	TGATCA	4 cut(s)	73, 633, 1219, 1284
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	5 cut(s)	187, 190, 212, 1049, 1052
FokI	GGATG	2 cut(s)	124, 815
Fsp4HI	GCNGC	5 cut(s)	187, 190, 212, 1049, 1052
FspBI	CTAG	4 cut(s)	753, 1082, 1197, 1299
GlaI	GCGC	2 cut(s)	954, 988
GluI	GCNGC	5 cut(s)	187, 190, 212, 1049, 1052
GsaI	CCCAGC	2 cut(s)	177, 211
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	3 cut(s)	5, 226, 389
HapII	CCGG	3 cut(s)	487, 713, 1190
HhaI	GCGC	2 cut(s)	955, 989
Hin1II	CATG	4 cut(s)	410, 965, 1081, 1369
Hin6I	GCGC	2 cut(s)	953, 987
HinP1I	GCGC	2 cut(s)	953, 987
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	8 cut(s)	54, 88, 305, 449, 791, 1133, 1332, 1413
HpaII	CCGG	3 cut(s)	487, 713, 1190
HphI	GGTGA	4 cut(s)	83, 677, 1111, 1352
Hpy166II	GTNNAC	4 cut(s)	166, 244, 349, 1116
Hpy188I	TCNGA	2 cut(s)	1069, 1284
Hpy188III	TCNNGA	6 cut(s)	51, 85, 971, 1211, 1223, 1426
Hpy8I	GTNNAC	4 cut(s)	166, 244, 349, 1116
HpyAV	CCTTC	5 cut(s)	460, 767, 793, 1026, 1337
HpyCH4III	ACNGT	2 cut(s)	727, 1256
HpyCH4IV	ACGT	2 cut(s)	312, 852
HpyCH4V	TGCA	4 cut(s)	366, 578, 1246, 1355
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 198, 913, 1243
HpyF3I	CTNAG	8 cut(s)	603, 822, 885, 941, 990, 1020, 1066, 1310
HpySE526I	ACGT	2 cut(s)	312, 852
Hsp92II	CATG	4 cut(s)	410, 965, 1081, 1369
HspAI	GCGC	2 cut(s)	953, 987
Ksp22I	TGATCA	4 cut(s)	73, 633, 1219, 1284
Kzo9I	GATC	8 cut(s)	73, 540, 633, 967, 982, 1012, 1219, 1284
LmnI	GCTCC	6 cut(s)	206, 236, 508, 761, 1387, 1445
Lsp1109I	GCAGC	1 cut(s)	1038
LweI	GCATC	2 cut(s)	186, 565
MaeI	CTAG	4 cut(s)	753, 1082, 1197, 1299
MaeII	ACGT	2 cut(s)	312, 852
MaeIII	GTNAC	5 cut(s)	10, 326, 441, 455, 1340
MalI	GATC	8 cut(s)	75, 542, 635, 969, 984, 1014, 1221, 1286
MbiI	CCGCTC	2 cut(s)	201, 1261
MboI	GATC	8 cut(s)	73, 540, 633, 967, 982, 1012, 1219, 1284
MboII	GAAGA	6 cut(s)	36, 39, 395, 782, 992, 1069
MfeI	CAATTG	1 cut(s)	1269
MflI	RGATCY	1 cut(s)	967
MluCI	AATT	6 cut(s)	79, 536, 610, 957, 995, 1269
MlyI	GAGTC	3 cut(s)	314, 458, 1142
MmeI	TCCRAC	2 cut(s)	150, 333
MseI	TTAA	2 cut(s)	849, 1074
MslI	CAYNNNNRTG	1 cut(s)	876
MspA1I	CMGCKG	1 cut(s)	1051
MspI	CCGG	3 cut(s)	487, 713, 1190
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	1269
Mva1269I	GAATGC	2 cut(s)	603, 625
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	2 cut(s)	955, 987
MwoI	GCNNNNNNNGC	4 cut(s)	183, 198, 913, 1243
NdeI	CATATG	1 cut(s)	1138
NdeII	GATC	8 cut(s)	73, 540, 633, 967, 982, 1012, 1219, 1284
NlaIII	CATG	4 cut(s)	410, 965, 1081, 1369
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	4 cut(s)	10, 326, 455, 1340
NspI	RCATGY	1 cut(s)	1081
NspV	TTCGAA	1 cut(s)	1330
PceI	AGGCCT	2 cut(s)	226, 389
PctI	GAATGC	2 cut(s)	603, 625
PfeI	GAWTC	5 cut(s)	54, 88, 791, 1332, 1413
PinAI	ACCGGT	1 cut(s)	486
PkrI	GCNGC	5 cut(s)	188, 191, 213, 1050, 1053
PleI	GAGTC	3 cut(s)	313, 457, 1141
PpsI	GAGTC	3 cut(s)	313, 457, 1141
Psp1406I	AACGTT	2 cut(s)	312, 852
Psp6I	CCWGG	1 cut(s)	221
PspFI	CCCAGC	2 cut(s)	173, 207
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	504
PsrI	GAACNNNNNNTAC	2 cut(s)	260, 292
PsuI	RGATCY	1 cut(s)	967
RsaI	GTAC	4 cut(s)	491, 1064, 1117, 1291
RsaNI	GTAC	4 cut(s)	490, 1063, 1116, 1290
RseI	CAYNNNNRTG	1 cut(s)	876
SaqAI	TTAA	2 cut(s)	849, 1074
SatI	GCNGC	5 cut(s)	187, 190, 212, 1049, 1052
Sau3AI	GATC	8 cut(s)	73, 540, 633, 967, 982, 1012, 1219, 1284
ScaI	AGTACT	2 cut(s)	1064, 1291
SchI	GAGTC	3 cut(s)	314, 458, 1142
ScrFI	CCNGG	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	186, 565
SfuI	TTCGAA	1 cut(s)	1330
SmiMI	CAYNNNNRTG	1 cut(s)	876
SmlI	CTYRAG	1 cut(s)	971
SmoI	CTYRAG	1 cut(s)	971
Sse9I	AATT	6 cut(s)	79, 536, 610, 957, 995, 1269
SseBI	AGGCCT	2 cut(s)	226, 389
SsiI	CCGC	8 cut(s)	187, 190, 199, 212, 758, 1049, 1054, 1261
SspMI	CTAG	4 cut(s)	753, 1082, 1197, 1299
StuI	AGGCCT	2 cut(s)	226, 389
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	2 cut(s)	727, 1256
TaiI	ACGT	2 cut(s)	315, 855
TaqI	TCGA	9 cut(s)	52, 86, 381, 522, 543, 629, 794, 1148, 1330
TasI	AATT	6 cut(s)	79, 536, 610, 957, 995, 1269
TatI	WGTACW	3 cut(s)	1062, 1115, 1289
TauI	GCSGC	4 cut(s)	189, 192, 214, 1051
TfiI	GAWTC	5 cut(s)	54, 88, 791, 1332, 1413
Tru1I	TTAA	2 cut(s)	849, 1074
Tru9I	TTAA	2 cut(s)	849, 1074
TscAI	CASTG	2 cut(s)	1012, 1261
TseFI	GTSAC	4 cut(s)	10, 326, 455, 1340
TseI	GCWGC	1 cut(s)	1051
Tsp45I	GTSAC	4 cut(s)	10, 326, 455, 1340
TspDTI	ATGAA	5 cut(s)	306, 812, 883, 894, 950
TspRI	CASTG	2 cut(s)	1012, 1261
XapI	RAATTY	2 cut(s)	610, 957
XceI	RCATGY	1 cut(s)	1081
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	4 cut(s)	753, 1082, 1197, 1299
ZrmI	AGTACT	2 cut(s)	1064, 1291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.