MD02G1075700.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014633
Physical Location & Seq
Reverse (-)
6017299 .. 6018353
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1075700.v1.1.491

Sequence Viewer

Length: 873 bp
ATGCGTTTGTGCGAAGAGGGTAAGGTCGGAGAGGCGTTGGAGTTTATGGGTCGAGGTGTCCATGAGTTCTTAAGACAGTCTCCGTTTCGCGGGGATATTGAGTTGAACACTAGATTGGTACAAATGTATGGGAGGTGTGGGAGTATGAGAGATGCACGCAAGGTGTTTGATAGAATGCGCGAGCGGAGCATGGGTTTGTGGCATTCGATGATCAGTGGGTATGCAGTGAATGGGCAGGGTGATGAGGGGCTGTTGTTGTTTGAACAAAAGAGGAATTCAGGATTGAAGCCTGTTAAGGAGACTTTTTTAGTGGTGTTGGCGGCATGTGCTAGTGCGGAAGCTGTAGACGAAGGCTTTGCGCTCTTTGAATCGATGACGAATGAGTACGAGATTGTGCCAGAAATTAAGTATTATTTAGGACTTATTGATGTTCTTGGGAACTCTGGTCATTTGAATGAAGTAGAGGAGTTCATTGAGAAAATGCCATTTGAGCCTACTGTGGAAGTTTGGGAGGCTCTTAGGAACCTTGCGCAAATTCACGGGGATATTGAGCTTGAAGATCACGCGGAGGATTTGTTGATGAGGGAAGCATGCTATGTGCCGGATACAAGATACGTGCTTCATAACATCGATCAGGAGGCAAAAGAGCAGGCATTGCAGTATCATAGCGAGCGTTTGGCAATTGCTTATGGTCTGATCAGTACTCCAGCCAGGCAAACTCTGAGGATTATAAAGAATCTCCGAATCTGCGGTGATTGTCATAACGCCATAAAAATCATGTCAAAGATTGTTGGGAGGGAGCTGATCGTTAGGGATAACAAGCGGTTCCATCATTTCAGGGATGGGAAGTGCTCCTGTGGGGATTACTGGTGA

Protein Analysis

291

Amino Acids

33.29

Weight (kDa)

5.55

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DYW_deaminase PF14432 199 - 290 1.9e-43 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07130
malus_domestica MD02G1075300.v1.1 MD02G1075700.v1.1 MD15G1204400.v1.1
prunus_persica Prupe.7G212800_v2.0.a1
pyrus_communis pycom02g05940 pycom15g18120
rosa_chinensis RchiOBHm_Chr2g0093011
rosa_laevigata RLG00000016359
rosa_multiflora Rmu_sc0000965.1_g000023
rosa_roxburghii Rroxscaffold_2G00148620
rosa_rugosa Rorug02G0031500
rosa_samantha Rh2AG077200 Rh2BG078600 Rh2CG080800 Rh2DG076000
rosa_wichuraiana Rw2G006900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
Acc16I TGCGCA 1 cut(s) 531
AccBSI CCGCTC 1 cut(s) 184
AccI GTMKAC 1 cut(s) 345
AccII CGCG 3 cut(s) 90, 180, 566
AciI CCGC 7 cut(s) 90, 184, 320, 335, 566, 750, 823
AcsI RAATTY 2 cut(s) 274, 534
AfaI GTAC 3 cut(s) 120, 386, 703
AfiI CCNNNNNNNGG 1 cut(s) 89
AflII CTTAAG 1 cut(s) 70
AgsI TTSAA 6 cut(s) 106, 263, 286, 368, 454, 557
AjnI CCWGG 1 cut(s) 710
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 3 cut(s) 341, 553, 802
AluI AGCT 3 cut(s) 341, 553, 802
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 2 cut(s) 84, 293
ApoI RAATTY 2 cut(s) 274, 534
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspLEI GCGC 3 cut(s) 180, 361, 532
AsuHPI GGTGA 2 cut(s) 251, 764
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
Bbv12I GWGCWC 1 cut(s) 854
BccI CCATC 2 cut(s) 836, 837
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 712
BciVI GTATCC 1 cut(s) 598
BclI TGATCA 2 cut(s) 210, 696
BcoDI GTCTC 2 cut(s) 84, 293
BfaI CTAG 2 cut(s) 111, 330
BfmI CTRYAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 70
BfuI GTATCC 1 cut(s) 598
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmcAI AGTACT 1 cut(s) 703
Bme1390I CCNGG 1 cut(s) 712
BmiI GGNNCC 2 cut(s) 524, 827
BmrFI CCNGG 1 cut(s) 712
BmsI GCATC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 690
Bsa29I ATCGAT 2 cut(s) 371, 630
BsaAI YACGTR 1 cut(s) 616
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 560, 590
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 872
Bse3DI GCAATG 1 cut(s) 653
BseBI CCWGG 1 cut(s) 712
BseCI ATCGAT 2 cut(s) 371, 630
BseGI GGATG 1 cut(s) 847
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 653
BseMII CTCAG 1 cut(s) 713
BseNI ACTGG 1 cut(s) 872
BseRI GAGGAG 1 cut(s) 479
Bsh1236I CGCG 3 cut(s) 90, 180, 566
BshVI ATCGAT 2 cut(s) 371, 630
BsiHKAI GWGCWC 1 cut(s) 854
BsiSI CCGG 1 cut(s) 602
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 84, 293
BsmI GAATGC 2 cut(s) 180, 202
Bsp1286I GDGCHC 1 cut(s) 854
Bsp143I GATC 5 cut(s) 210, 559, 631, 696, 804
BspACI CCGC 7 cut(s) 90, 184, 320, 335, 566, 750, 823
BspCNI CTCAG 1 cut(s) 714
BspDI ATCGAT 2 cut(s) 371, 630
BspFNI CGCG 3 cut(s) 90, 180, 566
BspLI GGNNCC 2 cut(s) 524, 827
BspTI CTTAAG 1 cut(s) 70
BsrBI CCGCTC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 653
BsrI ACTGG 1 cut(s) 872
BssMI GATC 5 cut(s) 210, 559, 631, 696, 804
Bst2UI CCWGG 1 cut(s) 712
Bst4CI ACNGT 2 cut(s) 78, 499
Bst6I CTCTTC 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 655
BstBAI YACGTR 1 cut(s) 616
BstC8I GCNNGC 5 cut(s) 157, 182, 592, 651, 671
BstDEI CTNAG 2 cut(s) 518, 722
BstF5I GGATG 1 cut(s) 847
BstFNI CGCG 3 cut(s) 90, 180, 566
BstHHI GCGC 3 cut(s) 180, 361, 532
BstKTI GATC 5 cut(s) 213, 562, 634, 699, 807
BstMAI GTCTC 2 cut(s) 84, 293
BstMBI GATC 5 cut(s) 210, 559, 631, 696, 804
BstMWI GCNNNNNNNGC 4 cut(s) 186, 326, 490, 655
BstNI CCWGG 1 cut(s) 712
BstNSI RCATGY 2 cut(s) 327, 594
BstSCI CCNGG 1 cut(s) 710
BstSFI CTRYAG 1 cut(s) 342
BstUI CGCG 3 cut(s) 90, 180, 566
Bsu15I ATCGAT 2 cut(s) 371, 630
BsuI GTATCC 1 cut(s) 598
BsuTUI ATCGAT 2 cut(s) 371, 630
BtsCI GGATG 1 cut(s) 847
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 220, 231
Cac8I GCNNGC 5 cut(s) 157, 182, 592, 651, 671
CfoI GCGC 3 cut(s) 180, 361, 532
ClaI ATCGAT 2 cut(s) 371, 630
Csp6I GTAC 3 cut(s) 119, 385, 702
CviAII CATG 5 cut(s) 62, 190, 324, 591, 778
CviJI RGCY 9 cut(s) 250, 289, 341, 354, 493, 515, 553, 710, 802
CviKI_1 RGCY 9 cut(s) 250, 289, 341, 354, 493, 515, 553, 710, 802
CviQI GTAC 3 cut(s) 119, 385, 702
DdeI CTNAG 2 cut(s) 518, 722
DpnI GATC 5 cut(s) 212, 561, 633, 698, 806
DpnII GATC 5 cut(s) 210, 559, 631, 696, 804
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 710
FaeI CATG 5 cut(s) 65, 193, 327, 594, 781
FatI CATG 5 cut(s) 61, 189, 323, 590, 777
FauI CCCGC 1 cut(s) 83
FbaI TGATCA 2 cut(s) 210, 696
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 854
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 2 cut(s) 111, 330
FspI TGCGCA 1 cut(s) 531
GlaI GCGC 3 cut(s) 179, 360, 531
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 690
HapII CCGG 1 cut(s) 602
HhaI GCGC 3 cut(s) 180, 361, 532
Hin1II CATG 5 cut(s) 65, 193, 327, 594, 781
Hin6I GCGC 3 cut(s) 178, 359, 530
HinP1I GCGC 3 cut(s) 178, 359, 530
HinfI GANTC 3 cut(s) 368, 736, 744
HpaII CCGG 1 cut(s) 602
HphI GGTGA 2 cut(s) 251, 764
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 4 cut(s) 29, 696, 723, 743
Hpy188III TCNNGA 2 cut(s) 279, 635
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 2 cut(s) 78, 499
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 3 cut(s) 155, 224, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 326, 490, 655
HpyF3I CTNAG 2 cut(s) 518, 722
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 5 cut(s) 65, 193, 327, 594, 781
HspAI GCGC 3 cut(s) 178, 359, 530
Ksp22I TGATCA 2 cut(s) 210, 696
Kzo9I GATC 5 cut(s) 210, 559, 631, 696, 804
LmnI GCTCC 3 cut(s) 186, 799, 857
LweI GCATC 1 cut(s) 142
MaeI CTAG 2 cut(s) 111, 330
MaeII ACGT 1 cut(s) 615
MalI GATC 5 cut(s) 212, 561, 633, 698, 806
MbiI CCGCTC 1 cut(s) 184
MboI GATC 5 cut(s) 210, 559, 631, 696, 804
MboII GAAGA 2 cut(s) 26, 569
MfeI CAATTG 1 cut(s) 681
MhlI GDGCHC 1 cut(s) 854
MluCI AATT 4 cut(s) 274, 402, 534, 681
MmeI TCCRAC 2 cut(s) 7, 18
MseI TTAA 3 cut(s) 71, 294, 405
MslI CAYNNNNRTG 1 cut(s) 453
MspCI CTTAAG 1 cut(s) 70
MspI CCGG 1 cut(s) 602
MspR9I CCNGG 1 cut(s) 712
MunI CAATTG 1 cut(s) 681
Mva1269I GAATGC 2 cut(s) 180, 202
MvaI CCWGG 1 cut(s) 712
MvnI CGCG 3 cut(s) 90, 180, 566
MwoI GCNNNNNNNGC 4 cut(s) 186, 326, 490, 655
NdeII GATC 5 cut(s) 210, 559, 631, 696, 804
NlaIII CATG 5 cut(s) 65, 193, 327, 594, 781
NlaIV GGNNCC 2 cut(s) 524, 827
NsbI TGCGCA 1 cut(s) 531
NspI RCATGY 2 cut(s) 327, 594
PaeI GCATGC 1 cut(s) 594
PctI GAATGC 2 cut(s) 180, 202
PfeI GAWTC 3 cut(s) 368, 736, 744
PkrI GCNGC 1 cut(s) 322
Ppu21I YACGTR 1 cut(s) 616
PsiI TTATAA 1 cut(s) 731
Psp6I CCWGG 1 cut(s) 710
PspGI CCWGG 1 cut(s) 710
PspN4I GGNNCC 2 cut(s) 524, 827
RsaI GTAC 3 cut(s) 120, 386, 703
RsaNI GTAC 3 cut(s) 119, 385, 702
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 3 cut(s) 71, 294, 405
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 5 cut(s) 210, 559, 631, 696, 804
ScaI AGTACT 1 cut(s) 703
ScrFI CCNGG 1 cut(s) 712
SduI GDGCHC 1 cut(s) 854
SetI ASST 9 cut(s) 27, 58, 137, 165, 343, 528, 555, 618, 804
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SphI GCATGC 1 cut(s) 594
Sse9I AATT 4 cut(s) 274, 402, 534, 681
SsiI CCGC 7 cut(s) 90, 184, 320, 335, 566, 750, 823
SspMI CTAG 2 cut(s) 111, 330
StyD4I CCNGG 1 cut(s) 710
TaaI ACNGT 2 cut(s) 78, 499
TaiI ACGT 1 cut(s) 618
TaqI TCGA 4 cut(s) 52, 206, 371, 630
TasI AATT 4 cut(s) 274, 402, 534, 681
TatI WGTACW 1 cut(s) 701
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 3 cut(s) 368, 736, 744
Tru1I TTAA 3 cut(s) 71, 294, 405
Tru9I TTAA 3 cut(s) 71, 294, 405
TscAI CASTG 2 cut(s) 220, 231
TspDTI ATGAA 3 cut(s) 460, 471, 611
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 2 cut(s) 220, 231
Vha464I CTTAAG 1 cut(s) 70
XapI RAATTY 2 cut(s) 274, 534
XceI RCATGY 2 cut(s) 327, 594
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 2 cut(s) 111, 330
ZrmI AGTACT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.