Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014633

Physical Location & Seq

Genomic Coordinates Reverse (-)

4013273 .. 4014285

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAATCGTGTGATGGATTGAAGTCGCTTGAGGTTGGGAGGAAGGTTCATGAGTTCATAAGCCATTCACCGTTTCGCGGGGATATTGAGTTGAGCACTAGATTGGTACAAATGTATGGGAGGTGTGGGAGTATGAGAGATGCACGCAAGGTGTTTGATAGAATGCGCGAGCGGAGCATGGGTTTGTGGCATTCGATGATCAGTGGGTATGCAGTGAACGGGCAGGGTGATGAGGGGCTGTTGTTGTTTGAACAAATGAGGAATTCGGGATTGAAGCCTGATAAGGAGACTTTTTTGGTAGTGTTGGCGGCGTGTGCTAGTGCGGAAGCTGTAGACGAAGGCTATGCGCTCTTCAAATCAATGACGAATGAATATGAGATTGTGCCAGAAATTCAGCATTATTTAGTACTTATTGATGTCCTTGGGAAGTCTGGTCATTTGAACGAAGTAGAGGAGTTCATTGAGAAAATACCATTTGAGCCTAATGTGGAAGTTTGGGAGGCTCTTAGGAAGTTTGCGCAAATTAACGGAGATATTGAGCTTGAAGATCGTGCGGAGGATTTGTTGCTTAGTATCGACCCTTCTAAGGCCAATGCTGACAAAATCCCATTGCCTCTGCAGAAGAAGCACTCGGAGATTAACATGCTAGAGGAGAAAAATAAGGCTATGTGCCTGATACAAGATACGTGCTCCATGACTCAGGAGGCAAAAGAGCGGGCCTTGCAGTATCATAGCGAGCGCAGACTCTTAAGGATTATAAAGAATCTCCGAATCTGCGGTGATTGTCATAACGCCATAAAAATCATGTCGAAGATTGTTGGGAGGGAGCTGATCGTTAGGGATAACAAGCGGTTCCATCATTTCAGGGATGGGGAGTGCTCCTGTGGGGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

300

Amino Acids

34.33

Weight (kDa)

5.76

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07130
malus_domestica	MD02G1075300.v1.1 MD02G1075700.v1.1 MD15G1204400.v1.1
prunus_persica	Prupe.7G212800_v2.0.a1
pyrus_communis	pycom02g05940 pycom15g18120
rosa_chinensis	RchiOBHm_Chr2g0093011
rosa_laevigata	RLG00000016359
rosa_multiflora	Rmu_sc0000965.1_g000023
rosa_roxburghii	Rroxscaffold_2G00148620
rosa_rugosa	Rorug02G0031500
rosa_samantha	Rh2AG077200 Rh2BG078600 Rh2CG080800 Rh2DG076000
rosa_wichuraiana	Rw2G006900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	758
Acc16I	TGCGCA	1 cut(s)	519
AccBSI	CCGCTC	2 cut(s)	172, 715
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	2 cut(s)	78, 168
AciI	CCGC	8 cut(s)	78, 172, 308, 323, 554, 715, 777, 850
AcsI	RAATTY	2 cut(s)	262, 390
AfaI	GTAC	2 cut(s)	108, 408
AfiI	CCNNNNNNNGG	2 cut(s)	77, 586
AflII	CTTAAG	1 cut(s)	748
AgsI	TTSAA	6 cut(s)	22, 251, 274, 355, 442, 545
AluBI	AGCT	3 cut(s)	329, 541, 829
AluI	AGCT	3 cut(s)	329, 541, 829
Alw21I	GWGCWC	3 cut(s)	98, 692, 881
Alw26I	GTCTC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	588, 717
ApoI	RAATTY	2 cut(s)	262, 390
AspLEI	GCGC	4 cut(s)	168, 349, 520, 741
AspS9I	GGNCC	1 cut(s)	717
AsuHPI	GGTGA	3 cut(s)	60, 239, 791
BaeI	ACNNNNGTAYC	2 cut(s)	98, 131
BarI	GAAGNNNNNNTAC	2 cut(s)	565, 597
Bbv12I	GWGCWC	3 cut(s)	98, 692, 881
BccI	CCATC	3 cut(s)	8, 863, 864
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	3 cut(s)	99, 318, 647
BfmI	CTRYAG	2 cut(s)	330, 617
BfrI	CTTAAG	1 cut(s)	748
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
BmcAI	AGTACT	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	717
BmiI	GGNNCC	1 cut(s)	854
BmsI	GCATC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	421
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 586
Bse3DI	GCAATG	1 cut(s)	608
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	1 cut(s)	874
BseLI	CCNNNNNNNGG	2 cut(s)	77, 586
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	1 cut(s)	713
BseRI	GAGGAG	2 cut(s)	467, 665
Bsh1236I	CGCG	2 cut(s)	78, 168
BshFI	GGCC	2 cut(s)	590, 719
BsiHKAI	GWGCWC	3 cut(s)	98, 692, 881
BslI	CCNNNNNNNGG	2 cut(s)	77, 586
BsmAI	GTCTC	1 cut(s)	281
BsmI	GAATGC	2 cut(s)	168, 190
BsnI	GGCC	2 cut(s)	590, 719
Bsp1286I	GDGCHC	3 cut(s)	98, 692, 881
Bsp143I	GATC	3 cut(s)	198, 547, 831
BspACI	CCGC	8 cut(s)	78, 172, 308, 323, 554, 715, 777, 850
BspANI	GGCC	2 cut(s)	590, 719
BspCNI	CTCAG	1 cut(s)	712
BspFNI	CGCG	2 cut(s)	78, 168
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	854
BspMAI	CTGCAG	1 cut(s)	621
BspQI	GCTCTTC	1 cut(s)	356
BspTI	CTTAAG	1 cut(s)	748
BsrBI	CCGCTC	2 cut(s)	172, 715
BsrDI	GCAATG	1 cut(s)	608
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	3 cut(s)	198, 547, 831
BssT1I	CCWWGG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	356
BstAFI	CTTAAG	1 cut(s)	748
BstBAI	YACGTR	1 cut(s)	687
BstC8I	GCNNGC	4 cut(s)	145, 170, 717, 737
BstDEI	CTNAG	4 cut(s)	506, 569, 585, 699
BstF5I	GGATG	1 cut(s)	874
BstFNI	CGCG	2 cut(s)	78, 168
BstHHI	GCGC	4 cut(s)	168, 349, 520, 741
BstKTI	GATC	3 cut(s)	201, 550, 834
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	3 cut(s)	198, 547, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 314, 625, 721
BstNSI	RCATGY	1 cut(s)	646
BstSFI	CTRYAG	2 cut(s)	330, 617
BstUI	CGCG	2 cut(s)	78, 168
BsuRI	GGCC	2 cut(s)	590, 719
BtsCI	GGATG	1 cut(s)	874
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	208, 219
Cac8I	GCNNGC	4 cut(s)	145, 170, 717, 737
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	4 cut(s)	168, 349, 520, 741
Cfr13I	GGNCC	1 cut(s)	717
Csp6I	GTAC	2 cut(s)	107, 407
CviAII	CATG	5 cut(s)	50, 178, 643, 694, 805
CviQI	GTAC	2 cut(s)	107, 407
DdeI	CTNAG	4 cut(s)	506, 569, 585, 699
DpnI	GATC	3 cut(s)	200, 549, 833
DpnII	GATC	3 cut(s)	198, 547, 831
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	5 cut(s)	53, 181, 646, 697, 808
FatI	CATG	5 cut(s)	49, 177, 642, 693, 804
FauI	CCCGC	2 cut(s)	71, 708
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	881
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	3 cut(s)	99, 318, 647
FspI	TGCGCA	1 cut(s)	519
GlaI	GCGC	4 cut(s)	167, 348, 519, 740
GluI	GCNGC	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	590, 719
HhaI	GCGC	4 cut(s)	168, 349, 520, 741
Hin1II	CATG	5 cut(s)	53, 181, 646, 697, 808
Hin6I	GCGC	4 cut(s)	166, 347, 518, 739
HinP1I	GCGC	4 cut(s)	166, 347, 518, 739
HinfI	GANTC	5 cut(s)	5, 697, 744, 763, 771
HphI	GGTGA	3 cut(s)	60, 239, 791
Hpy166II	GTNNAC	2 cut(s)	217, 334
Hpy188I	TCNGA	2 cut(s)	634, 770
Hpy188III	TCNNGA	3 cut(s)	50, 267, 701
Hpy8I	GTNNAC	2 cut(s)	217, 334
HpyAV	CCTTC	3 cut(s)	37, 332, 591
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	4 cut(s)	143, 212, 619, 724
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 314, 625, 721
HpyF3I	CTNAG	4 cut(s)	506, 569, 585, 699
HpySE526I	ACGT	1 cut(s)	686
Hsp92II	CATG	5 cut(s)	53, 181, 646, 697, 808
HspAI	GCGC	4 cut(s)	166, 347, 518, 739
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	198, 547, 831
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	4 cut(s)	174, 695, 826, 884
LpnPI	CCDG	8 cut(s)	209, 291, 399, 417, 686, 686, 850, 895
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	3 cut(s)	99, 318, 647
MaeII	ACGT	1 cut(s)	686
MalI	GATC	3 cut(s)	200, 549, 833
MbiI	CCGCTC	2 cut(s)	172, 715
MboI	GATC	3 cut(s)	198, 547, 831
MboII	GAAGA	4 cut(s)	343, 557, 634, 823
MhlI	GDGCHC	3 cut(s)	98, 692, 881
MluCI	AATT	3 cut(s)	262, 390, 522
MlyI	GAGTC	2 cut(s)	691, 738
MseI	TTAA	3 cut(s)	525, 639, 749
MspCI	CTTAAG	1 cut(s)	748
Mva1269I	GAATGC	2 cut(s)	168, 190
MvnI	CGCG	2 cut(s)	78, 168
MwoI	GCNNNNNNNGC	4 cut(s)	174, 314, 625, 721
NdeII	GATC	3 cut(s)	198, 547, 831
NlaIII	CATG	5 cut(s)	53, 181, 646, 697, 808
NlaIV	GGNNCC	1 cut(s)	854
NsbI	TGCGCA	1 cut(s)	519
NspI	RCATGY	1 cut(s)	646
PagI	TCATGA	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	356
PctI	GAATGC	2 cut(s)	168, 190
PfeI	GAWTC	3 cut(s)	5, 763, 771
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	2 cut(s)	691, 738
PpsI	GAGTC	2 cut(s)	691, 738
Ppu21I	YACGTR	1 cut(s)	687
PsiI	TTATAA	1 cut(s)	758
PspN4I	GGNNCC	1 cut(s)	854
PspPI	GGNCC	1 cut(s)	717
PstI	CTGCAG	1 cut(s)	621
RsaI	GTAC	2 cut(s)	108, 408
RsaNI	GTAC	2 cut(s)	107, 407
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	525, 639, 749
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	3 cut(s)	198, 547, 831
Sau96I	GGNCC	1 cut(s)	717
ScaI	AGTACT	1 cut(s)	408
SchI	GAGTC	2 cut(s)	691, 738
SduI	GDGCHC	3 cut(s)	98, 692, 881
SetI	ASST	8 cut(s)	36, 48, 125, 153, 331, 543, 689, 831
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	2 cut(s)	330, 617
SmlI	CTYRAG	2 cut(s)	29, 748
SmoI	CTYRAG	2 cut(s)	29, 748
Sse9I	AATT	3 cut(s)	262, 390, 522
SsiI	CCGC	8 cut(s)	78, 172, 308, 323, 554, 715, 777, 850
SspMI	CTAG	3 cut(s)	99, 318, 647
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	3 cut(s)	194, 576, 809
TasI	AATT	3 cut(s)	262, 390, 522
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	3 cut(s)	5, 763, 771
Tru1I	TTAA	3 cut(s)	525, 639, 749
Tru9I	TTAA	3 cut(s)	525, 639, 749
TscAI	CASTG	2 cut(s)	208, 219
TspDTI	ATGAA	4 cut(s)	38, 46, 384, 448
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	2 cut(s)	208, 219
Vha464I	CTTAAG	1 cut(s)	748
XapI	RAATTY	2 cut(s)	262, 390
XceI	RCATGY	1 cut(s)	646
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	3 cut(s)	99, 318, 647
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.