Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014633

Physical Location & Seq

Genomic Coordinates Reverse (-)

5997036 .. 5998207

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1075300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCGTCTGTGCGAAGAGGGTAAGGTCGGAGAGGCGTTGGAGTTTATGGGTCGAGGTGTTTCTGCCGATTACGGAGTTTTTTGCGTGTTATTGGAATCGTGTGATGGATTGAAGTCGCTTGAGGTTGGGAGGAAGGTCCATGAGTTCTTAAGACAGTCTCCGTTTCGCGGGGATATTGAGTTGAACACTAGATTGGTACAAATGTATTGGAGGTGTGGGAGTATGAGAGATGCACGCAAGCTGTTTGATAGAATGTGCGAGCGGAGCATGGGTTTGTGGCATTCGATGATCAGTGGGTATGCAGTGAATGGGCAGCGTGATGAGGGGCTGTTGTTGTTTGAACAAATGAGGAATTCAGGATTGAAGCCTGATAAGGAGACTTTTTTGGTAGTGTTGGCGGCGTATGCTAGTGCGGAAGCTGTAGACGAAGGCTATGCGCTCTTCGAATCGATGACGAATGAGTATGAGATTGTGCCAGAAATTCAGCATTATTTAGGACTTATTGATGTCCTTGGGAAGTCTGGTCATTTGAACGAAGTAGAGGAGTTCATTGAGAAAATGCCATTTGAGCCTAATGTGGAAGCTTGGGAGGCTCTTAGAAACTTTGCGCAAATTCACAGAGATATTGAGCTTGAAGATCGCGCGGAGGATTTGTTGAAGCACTCAGAGATTAACATGCTAGAGGAGAAAAATAAGGTGAGTGAGTATCGGAGTACAAATGAGGAGTATGAGAAATTGCAAGGTTTGAAAGGACAGATGAGGGAAGCGGGCTATGTGCCTGATACAAGATACGTGCTGCATGACATCGATCAGGAGGCAAAAGAGCGGGCCTTGCAGTATCATAGCGAGCGTTTGGCAATTGCTTATGGTCTGATCAGTACTCCAGCCAGGCAAACTCTAAGGATTATAAAGAATCTTCAAATCTGCGGTGATTGTCATAACGCCATGTCGAAGATTGTTGGGAGGGAGCTGATCGTTAGGGATAACAAGCGGTTCCATCATTTCAGGGATGGGGAGGGAGTGCTCCTGTGGGGATTATTGGTAAAGTTATCTGCAGTTAGTGATAAAGCTTCTGCAGCAAGAAAATTCAGAGCAAGATTTATGGCTGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

372

Amino Acids

42.6

Weight (kDa)

5.68

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	93 - 136	8e-07	PPR repeat family
DYW_deaminase	PF14432	257 - 339	5.9e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07130
malus_domestica	MD02G1075300.v1.1 MD02G1075700.v1.1 MD15G1204400.v1.1
prunus_persica	Prupe.7G212800_v2.0.a1
pyrus_communis	pycom02g05940 pycom15g18120
rosa_chinensis	RchiOBHm_Chr2g0093011
rosa_laevigata	RLG00000016359
rosa_multiflora	Rmu_sc0000965.1_g000023
rosa_roxburghii	Rroxscaffold_2G00148620
rosa_rugosa	Rorug02G0031500
rosa_samantha	Rh2AG077200 Rh2BG078600 Rh2CG080800 Rh2DG076000
rosa_wichuraiana	Rw2G006900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	908
Acc16I	TGCGCA	1 cut(s)	609
AccBSI	CCGCTC	2 cut(s)	262, 826
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	3 cut(s)	168, 642, 644
AciI	CCGC	9 cut(s)	168, 262, 398, 413, 644, 767, 826, 927, 991
AcsI	RAATTY	4 cut(s)	352, 480, 612, 1085
AfaI	GTAC	3 cut(s)	198, 715, 880
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	9 cut(s)	112, 184, 341, 364, 532, 635, 658, 748, 920
AjnI	CCWGG	1 cut(s)	887
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	6 cut(s)	241, 419, 584, 631, 970, 1070
AluI	AGCT	6 cut(s)	241, 419, 584, 631, 970, 1070
Alw21I	GWGCWC	1 cut(s)	1026
Alw26I	GTCTC	2 cut(s)	162, 371
AoxI	GGCC	1 cut(s)	828
ApeKI	GCWGC	3 cut(s)	313, 796, 1076
ApoI	RAATTY	4 cut(s)	352, 480, 612, 1085
AspLEI	GCGC	3 cut(s)	439, 610, 644
AspS9I	GGNCC	2 cut(s)	136, 828
AsuHPI	GGTGA	2 cut(s)	709, 941
AsuII	TTCGAA	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	136
BaeI	ACNNNNGTAYC	2 cut(s)	188, 221
Bbv12I	GWGCWC	1 cut(s)	1026
BbvI	GCAGC	3 cut(s)	325, 783, 1088
BccI	CCATC	3 cut(s)	98, 1004, 1005
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	889
BclI	TGATCA	2 cut(s)	288, 873
BcoDI	GTCTC	2 cut(s)	162, 371
BfaI	CTAG	3 cut(s)	189, 408, 680
BfmI	CTRYAG	3 cut(s)	420, 1053, 1074
BfrI	CTTAAG	1 cut(s)	148
BisI	GCNGC	4 cut(s)	314, 399, 797, 1077
BlsI	GCNGC	4 cut(s)	315, 400, 798, 1078
BmcAI	AGTACT	1 cut(s)	880
Bme1390I	CCNGG	1 cut(s)	889
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 828
BmiI	GGNNCC	1 cut(s)	995
BmrFI	CCNGG	1 cut(s)	889
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	867
Bpu14I	TTCGAA	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	140
Bsa29I	ATCGAT	2 cut(s)	449, 807
BsaAI	YACGTR	1 cut(s)	793
BsaJI	CCNNGG	1 cut(s)	511
BsaXI	ACNNNNNCTCC	4 cut(s)	256, 286, 638, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	889
BseCI	ATCGAT	2 cut(s)	449, 807
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	1 cut(s)	1015
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	678
BseRI	GAGGAG	3 cut(s)	557, 698, 737
BseXI	GCAGC	3 cut(s)	325, 783, 1088
Bsh1236I	CGCG	3 cut(s)	168, 642, 644
BshFI	GGCC	1 cut(s)	830
BshVI	ATCGAT	2 cut(s)	449, 807
BsiHKAI	GWGCWC	1 cut(s)	1026
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	162, 371
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	830
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	1026
Bsp143I	GATC	5 cut(s)	288, 637, 808, 873, 972
BspACI	CCGC	9 cut(s)	168, 262, 398, 413, 644, 767, 826, 927, 991
BspANI	GGCC	1 cut(s)	830
BspCNI	CTCAG	1 cut(s)	677
BspDI	ATCGAT	2 cut(s)	449, 807
BspFNI	CGCG	3 cut(s)	168, 642, 644
BspLI	GGNNCC	1 cut(s)	995
BspMAI	CTGCAG	2 cut(s)	1057, 1078
BspQI	GCTCTTC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	444
BspTI	CTTAAG	1 cut(s)	148
BsrBI	CCGCTC	2 cut(s)	262, 826
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	5 cut(s)	288, 637, 808, 873, 972
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	889
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	2 cut(s)	9, 446
BstAFI	CTTAAG	1 cut(s)	148
BstBAI	YACGTR	1 cut(s)	793
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	6 cut(s)	235, 239, 260, 769, 828, 848
BstDEI	CTNAG	3 cut(s)	596, 664, 899
BstF5I	GGATG	1 cut(s)	1015
BstFNI	CGCG	3 cut(s)	168, 642, 644
BstHHI	GCGC	3 cut(s)	439, 610, 644
BstKTI	GATC	5 cut(s)	291, 640, 811, 876, 975
BstMAI	GTCTC	2 cut(s)	162, 371
BstMBI	GATC	5 cut(s)	288, 637, 808, 873, 972
BstMWI	GCNNNNNNNGC	6 cut(s)	264, 404, 568, 590, 832, 1076
BstNI	CCWGG	1 cut(s)	889
BstNSI	RCATGY	1 cut(s)	679
BstSCI	CCNGG	1 cut(s)	887
BstSFI	CTRYAG	3 cut(s)	420, 1053, 1074
BstUI	CGCG	3 cut(s)	168, 642, 644
BstV1I	GCAGC	3 cut(s)	325, 783, 1088
Bsu15I	ATCGAT	2 cut(s)	449, 807
BsuRI	GGCC	1 cut(s)	830
BsuTUI	ATCGAT	2 cut(s)	449, 807
BtsCI	GGATG	1 cut(s)	1015
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	298, 309
Cac8I	GCNNGC	6 cut(s)	235, 239, 260, 769, 828, 848
CfoI	GCGC	3 cut(s)	439, 610, 644
Cfr13I	GGNCC	2 cut(s)	136, 828
ClaI	ATCGAT	2 cut(s)	449, 807
Csp6I	GTAC	3 cut(s)	197, 714, 879
CviAII	CATG	5 cut(s)	140, 268, 676, 800, 946
CviQI	GTAC	3 cut(s)	197, 714, 879
DdeI	CTNAG	3 cut(s)	596, 664, 899
DpnI	GATC	5 cut(s)	290, 639, 810, 875, 974
DpnII	GATC	5 cut(s)	288, 637, 808, 873, 972
Eam1104I	CTCTTC	2 cut(s)	9, 446
EarI	CTCTTC	2 cut(s)	9, 446
Eco130I	CCWWGG	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	887
EcoT14I	CCWWGG	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	5 cut(s)	143, 271, 679, 803, 949
FatI	CATG	5 cut(s)	139, 267, 675, 799, 945
FauI	CCCGC	3 cut(s)	161, 760, 819
FbaI	TGATCA	2 cut(s)	288, 873
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	4 cut(s)	314, 399, 797, 1077
FokI	GGATG	1 cut(s)	1022
Fsp4HI	GCNGC	4 cut(s)	314, 399, 797, 1077
FspBI	CTAG	3 cut(s)	189, 408, 680
FspI	TGCGCA	1 cut(s)	609
GlaI	GCGC	3 cut(s)	438, 609, 643
GluI	GCNGC	4 cut(s)	314, 399, 797, 1077
GsuI	CTGGAG	1 cut(s)	867
HaeIII	GGCC	1 cut(s)	830
HhaI	GCGC	3 cut(s)	439, 610, 644
Hin1II	CATG	5 cut(s)	143, 271, 679, 803, 949
Hin6I	GCGC	3 cut(s)	437, 608, 642
HinP1I	GCGC	3 cut(s)	437, 608, 642
HindIII	AAGCTT	2 cut(s)	582, 1068
HinfI	GANTC	3 cut(s)	95, 446, 913
HphI	GGTGA	2 cut(s)	709, 941
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	29, 667, 711, 873, 1091
Hpy188III	TCNNGA	2 cut(s)	357, 812
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	2 cut(s)	127, 422
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	792
HpyCH4V	TGCA	7 cut(s)	233, 302, 739, 799, 835, 1055, 1076
HpyF10VI	GCNNNNNNNGC	6 cut(s)	264, 404, 568, 590, 832, 1076
HpyF3I	CTNAG	3 cut(s)	596, 664, 899
HpySE526I	ACGT	1 cut(s)	792
Hsp92II	CATG	5 cut(s)	143, 271, 679, 803, 949
HspAI	GCGC	3 cut(s)	437, 608, 642
Ksp22I	TGATCA	2 cut(s)	288, 873
Kzo9I	GATC	5 cut(s)	288, 637, 808, 873, 972
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	3 cut(s)	264, 967, 1029
Lsp1109I	GCAGC	3 cut(s)	325, 783, 1088
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	3 cut(s)	189, 408, 680
MaeII	ACGT	1 cut(s)	792
MalI	GATC	5 cut(s)	290, 639, 810, 875, 974
MbiI	CCGCTC	2 cut(s)	262, 826
MboI	GATC	5 cut(s)	288, 637, 808, 873, 972
MboII	GAAGA	5 cut(s)	26, 433, 647, 908, 964
MfeI	CAATTG	1 cut(s)	858
MhlI	GDGCHC	1 cut(s)	1026
MluCI	AATT	7 cut(s)	352, 480, 612, 734, 858, 1085, 1111
MmeI	TCCRAC	2 cut(s)	7, 18
MseI	TTAA	3 cut(s)	149, 672, 1114
MspCI	CTTAAG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	889
MunI	CAATTG	1 cut(s)	858
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	889
MvnI	CGCG	3 cut(s)	168, 642, 644
MwoI	GCNNNNNNNGC	6 cut(s)	264, 404, 568, 590, 832, 1076
NdeII	GATC	5 cut(s)	288, 637, 808, 873, 972
NlaIII	CATG	5 cut(s)	143, 271, 679, 803, 949
NlaIV	GGNNCC	1 cut(s)	995
NsbI	TGCGCA	1 cut(s)	609
NspI	RCATGY	1 cut(s)	679
NspV	TTCGAA	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	446
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	3 cut(s)	95, 446, 913
PkrI	GCNGC	4 cut(s)	315, 400, 798, 1078
Ppu21I	YACGTR	1 cut(s)	793
PsiI	TTATAA	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	887
PspGI	CCWGG	1 cut(s)	887
PspN4I	GGNNCC	1 cut(s)	995
PspPI	GGNCC	2 cut(s)	136, 828
PstI	CTGCAG	2 cut(s)	1057, 1078
RsaI	GTAC	3 cut(s)	198, 715, 880
RsaNI	GTAC	3 cut(s)	197, 714, 879
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	149, 672, 1114
SatI	GCNGC	4 cut(s)	314, 399, 797, 1077
Sau3AI	GATC	5 cut(s)	288, 637, 808, 873, 972
Sau96I	GGNCC	2 cut(s)	136, 828
ScaI	AGTACT	1 cut(s)	880
ScrFI	CCNGG	1 cut(s)	889
SduI	GDGCHC	1 cut(s)	1026
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	3 cut(s)	420, 1053, 1074
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	1 cut(s)	136
SmlI	CTYRAG	2 cut(s)	119, 148
SmoI	CTYRAG	2 cut(s)	119, 148
Sse9I	AATT	7 cut(s)	352, 480, 612, 734, 858, 1085, 1111
SsiI	CCGC	9 cut(s)	168, 262, 398, 413, 644, 767, 826, 927, 991
SspMI	CTAG	3 cut(s)	189, 408, 680
StyD4I	CCNGG	1 cut(s)	887
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	795
TaqI	TCGA	6 cut(s)	52, 284, 444, 449, 807, 950
TasI	AATT	7 cut(s)	352, 480, 612, 734, 858, 1085, 1111
TatI	WGTACW	2 cut(s)	713, 878
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	3 cut(s)	95, 446, 913
Tru1I	TTAA	3 cut(s)	149, 672, 1114
Tru9I	TTAA	3 cut(s)	149, 672, 1114
TscAI	CASTG	2 cut(s)	298, 309
TseI	GCWGC	3 cut(s)	313, 796, 1076
TspDTI	ATGAA	1 cut(s)	538
TspGWI	ACGGA	2 cut(s)	87, 150
TspRI	CASTG	2 cut(s)	298, 309
Vha464I	CTTAAG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	4 cut(s)	352, 480, 612, 1085
XceI	RCATGY	1 cut(s)	679
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	3 cut(s)	189, 408, 680
ZrmI	AGTACT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.