Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008743

Physical Location & Seq

Genomic Coordinates Forward (+)

3807172 .. 3808732

Gene Structure 1561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07181.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGATCCCTGTCATAGACTTTGGTGAGATCAATGGTGAAGAGAGGGGCAAGACGATGGCTCTTCTGCACCAAGCGTGCGAGCAATGGGGCTTCTTTCAAATTGAGAACCATGGAATCGACAAACAACTGATGGACAAAGTGAAGCAATTGGTAAATGCATACTATGAAGAAAATTTGAAAGAGAGCTTTTATCAGTCAGAGATAGCTAGAAGCTTAGAGAAAGATGATACCTCTGACAAAGACTGGGAAACCACCTTTTTCGTCTGGCATCGCCCCACATCTAACATTGAAGCAATTCCAAACATCTCAGAGGATCTTTGCAAAACAATGAATGAGTACATAGCTCAGCTGATAAACCTGGCAGAGAAACTCTCTGAGCTCATGTGTGAGAATCTTGGTTTGGAGAAGGATGATATCAAGAATGCATTTTCAGGTAGCAAGGGTCCTTCTGTCGGGACAAAAGTTGCAAAATATCCTCAGTGTTCTCAGCCAGAACGTGTGAGAGGACTGCGTGAGCACACTGATGCTGGTGGGATCATACTGTTGCTCCAAGATGACCAAGTTCCGGGTCTTGAATTCTTCAAAGATGGCAAATGGGTTGCAATTCCACCATCCAAGAACAACACCATCTTTGTGAACACAGGTGACCAACTGGAGGTGCTGAGTAATGGAAGGTACAAAAGTACTCTACACCGTGTCTTGACAGACAAGAATGGAAGTCGACTATCCATTGCTACCTTCTATAATCCTGCTGGAGATGCCCTTATCTCTCCAGCTCCCAAACTCTTGTACCCGAATAGCTTCCGTTTTCAAGATTACCTGAATCTTTATGCCGCCACAAAGTTCAACGACAAGGGCCCTAGATTCGAATCCATGAAACAAATGGCCAATGGGAACAATGGTTTTCATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042594 GO:0050896 GO:0051365 GO:0051716 GO:0070542 GO:0070887 GO:0071229 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071396 GO:0071398 GO:0071496 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

306

Amino Acids

34.56

Weight (kDa)

5.29

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	113 - 207	2.8e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19590 AT2G19590
fragaria_vesca	FvH4_1g07181 FvH4_1g07181 FvH4_1g07181 FvH4_1g07190
malus_domestica	MD15G1205100.v1.1
prunus_persica	Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1
pyrus_communis	pycom15g18190
rosa_chinensis	RchiOBHm_Chr2g0093091
rosa_laevigata	RLG00000016367
rosa_multiflora	Rmu_sc0006865.1_g000009
rosa_roxburghii	Rroxscaffold_2G00148520
rosa_rugosa	Rorug02G0032600 Rorug02G0032700
rosa_samantha	Rh2AG078000 Rh2BG079300 Rh2CG081700 Rh2DG077000
rosa_wichuraiana	Rw2G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	724
AciI	CCGC	1 cut(s)	837
AclWI	GGATC	2 cut(s)	324, 545
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	2 cut(s)	175, 578
AfaI	GTAC	4 cut(s)	341, 680, 688, 794
AfiI	CCNNNNNNNGG	3 cut(s)	455, 568, 658
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	7 cut(s)	101, 181, 293, 578, 586, 815, 850
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	8 cut(s)	189, 209, 216, 347, 352, 382, 779, 804
AluI	AGCT	8 cut(s)	189, 209, 216, 347, 352, 382, 779, 804
Alw21I	GWGCWC	2 cut(s)	384, 522
AlwI	GGATC	2 cut(s)	324, 545
AoxI	GGCC	2 cut(s)	859, 888
ApaI	GGGCCC	1 cut(s)	863
ApoI	RAATTY	2 cut(s)	175, 578
Asp700I	GAANNNNTTC	2 cut(s)	297, 803
AspS9I	GGNCC	3 cut(s)	446, 859, 860
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	38, 50, 659
AsuII	TTCGAA	1 cut(s)	870
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	863
BaeI	ACNNNNGTAYC	4 cut(s)	670, 703, 776, 809
BalI	TGGCCA	1 cut(s)	890
BanII	GRGCYC	2 cut(s)	384, 863
Bbv12I	GWGCWC	2 cut(s)	384, 522
BccI	CCATC	5 cut(s)	52, 127, 584, 622, 638
BciT130I	CCWGG	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	570
BfaI	CTAG	2 cut(s)	210, 864
BisI	GCNGC	1 cut(s)	837
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	838
BmcAI	AGTACT	1 cut(s)	688
Bme1390I	CCNGG	2 cut(s)	362, 570
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	3 cut(s)	446, 859, 860
BmiI	GGNNCC	2 cut(s)	447, 861
BmrFI	CCNGG	2 cut(s)	362, 570
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	3 cut(s)	280, 517, 751
BmuI	ACTGGG	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	3 cut(s)	677, 759, 777
Bpu1102I	GCTNAGC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	870
BpuMI	CCSGG	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	871
BsaJI	CCNNGG	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	455, 568, 658
Bse1I	ACTGG	2 cut(s)	251, 660
Bse3DI	GCAATG	2 cut(s)	92, 732
Bse8I	GATNNNNATC	1 cut(s)	871
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	418, 614
BseJI	GATNNNNATC	1 cut(s)	871
BseLI	CCNNNNNNNGG	3 cut(s)	455, 568, 658
BseMI	GCAATG	2 cut(s)	92, 732
BseMII	CTCAG	6 cut(s)	324, 362, 369, 494, 503, 656
BseNI	ACTGG	2 cut(s)	251, 660
BseSI	GKGCMC	1 cut(s)	863
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	861, 890
BsiHKAI	GWGCWC	2 cut(s)	384, 522
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	3 cut(s)	455, 568, 658
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	861, 890
Bsp119I	TTCGAA	1 cut(s)	870
Bsp120I	GGGCCC	1 cut(s)	859
Bsp1286I	GDGCHC	3 cut(s)	384, 522, 863
Bsp143I	GATC	4 cut(s)	6, 30, 316, 537
Bsp1720I	GCTNAGC	1 cut(s)	348
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	1 cut(s)	837
BspANI	GGCC	2 cut(s)	861, 890
BspCNI	CTCAG	6 cut(s)	323, 361, 370, 493, 502, 657
BspLI	GGNNCC	2 cut(s)	447, 861
BspPI	GGATC	2 cut(s)	324, 545
BspQI	GCTCTTC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	870
BsrDI	GCAATG	2 cut(s)	92, 732
BsrI	ACTGG	2 cut(s)	251, 660
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	4 cut(s)	6, 30, 316, 537
BssT1I	CCWWGG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	546, 698
Bst6I	CTCTTC	2 cut(s)	36, 69
BstBI	TTCGAA	1 cut(s)	870
BstC8I	GCNNGC	2 cut(s)	79, 83
BstDEI	CTNAG	7 cut(s)	217, 310, 348, 378, 480, 489, 665
BstDSI	CCRYGG	1 cut(s)	112
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	418, 614
BstKTI	GATC	4 cut(s)	9, 33, 319, 540
BstMBI	GATC	4 cut(s)	6, 30, 316, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	761
BstNI	CCWGG	1 cut(s)	362
BstPI	GGTNACC	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	360, 568
BstSLI	GKGCMC	1 cut(s)	863
BstX2I	RGATCY	2 cut(s)	6, 316
BstYI	RGATCY	2 cut(s)	6, 316
BsuRI	GGCC	2 cut(s)	861, 890
BtgI	CCRYGG	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	418, 614
BtsIMutI	CAGTG	2 cut(s)	488, 522
Cac8I	GCNNGC	2 cut(s)	79, 83
Cfr13I	GGNCC	3 cut(s)	446, 859, 860
Csp6I	GTAC	4 cut(s)	340, 679, 687, 793
CviAII	CATG	3 cut(s)	113, 385, 877
CviQI	GTAC	4 cut(s)	340, 679, 687, 793
DdeI	CTNAG	7 cut(s)	217, 310, 348, 378, 480, 489, 665
DpnI	GATC	4 cut(s)	8, 32, 318, 539
DpnII	GATC	4 cut(s)	6, 30, 316, 537
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	2 cut(s)	36, 69
EarI	CTCTTC	2 cut(s)	36, 69
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	384, 863
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	382
Eco91I	GGTNACC	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	382
EcoO109I	RGGNCCY	3 cut(s)	446, 859, 860
EcoO65I	GGTNACC	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	360
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	112
EcoT22I	ATGCAT	2 cut(s)	163, 430
EcoT38I	GRGCYC	2 cut(s)	384, 863
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	3 cut(s)	116, 388, 880
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	3 cut(s)	112, 384, 876
FblI	GTMKAC	1 cut(s)	724
Fnu4HI	GCNGC	1 cut(s)	837
FokI	GGATG	2 cut(s)	425, 601
FriOI	GRGCYC	2 cut(s)	384, 863
Fsp4HI	GCNGC	1 cut(s)	837
FspBI	CTAG	2 cut(s)	210, 864
GluI	GCNGC	1 cut(s)	837
GsuI	CTGGAG	3 cut(s)	677, 759, 777
HaeIII	GGCC	2 cut(s)	861, 890
HapII	CCGG	1 cut(s)	569
Hin1II	CATG	3 cut(s)	116, 388, 880
HincII	GTYRAC	1 cut(s)	725
HindII	GTYRAC	1 cut(s)	725
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	5 cut(s)	117, 394, 826, 867, 872
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	3 cut(s)	38, 50, 659
Hpy166II	GTNNAC	2 cut(s)	640, 725
Hpy188I	TCNGA	4 cut(s)	202, 238, 313, 379
Hpy188III	TCNNGA	5 cut(s)	421, 457, 575, 703, 815
Hpy8I	GTNNAC	2 cut(s)	640, 725
HpyAV	CCTTC	4 cut(s)	403, 459, 669, 751
HpyCH4III	ACNGT	2 cut(s)	546, 698
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	6 cut(s)	70, 161, 324, 428, 470, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	761
HpyF3I	CTNAG	7 cut(s)	217, 310, 348, 378, 480, 489, 665
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	3 cut(s)	116, 388, 880
Kzo9I	GATC	4 cut(s)	6, 30, 316, 537
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	555, 784
LweI	GCATC	3 cut(s)	280, 517, 751
MaeI	CTAG	2 cut(s)	210, 864
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	4 cut(s)	8, 32, 318, 539
MboI	GATC	4 cut(s)	6, 30, 316, 537
MboII	GAAGA	4 cut(s)	53, 56, 182, 574
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	2 cut(s)	6, 316
MhlI	GDGCHC	3 cut(s)	384, 522, 863
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	6 cut(s)	102, 149, 175, 297, 578, 606
MluNI	TGGCCA	1 cut(s)	890
MnlI	CCTC	6 cut(s)	39, 244, 307, 489, 500, 652
Mox20I	TGGCCA	1 cut(s)	890
Mph1103I	ATGCAT	2 cut(s)	163, 430
MroXI	GAANNNNTTC	2 cut(s)	297, 803
MscI	TGGCCA	1 cut(s)	890
MslI	CAYNNNNRTG	2 cut(s)	525, 635
Msp20I	TGGCCA	1 cut(s)	890
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	2 cut(s)	362, 570
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	761
NciI	CCSGG	1 cut(s)	570
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	4 cut(s)	6, 30, 316, 537
NlaIII	CATG	3 cut(s)	116, 388, 880
NlaIV	GGNNCC	2 cut(s)	447, 861
NmuCI	GTSAC	1 cut(s)	647
NsiI	ATGCAT	2 cut(s)	163, 430
NspV	TTCGAA	1 cut(s)	870
PciSI	GCTCTTC	1 cut(s)	69
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	2 cut(s)	297, 803
PfeI	GAWTC	5 cut(s)	117, 394, 826, 867, 872
PkrI	GCNGC	1 cut(s)	838
PpuMI	RGGWCCY	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	360
PspEI	GGTNACC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	447, 861
PspOMI	GGGCCC	1 cut(s)	859
PspPI	GGNCC	3 cut(s)	446, 859, 860
PspPPI	RGGWCCY	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	6, 316
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	4 cut(s)	341, 680, 688, 794
RsaNI	GTAC	4 cut(s)	340, 679, 687, 793
RseI	CAYNNNNRTG	2 cut(s)	525, 635
SacI	GAGCTC	1 cut(s)	384
SalI	GTCGAC	1 cut(s)	723
SapI	GCTCTTC	1 cut(s)	69
SatI	GCNGC	1 cut(s)	837
Sau3AI	GATC	4 cut(s)	6, 30, 316, 537
Sau96I	GGNCC	3 cut(s)	446, 859, 860
ScaI	AGTACT	1 cut(s)	688
ScrFI	CCNGG	2 cut(s)	362, 570
SduI	GDGCHC	3 cut(s)	384, 522, 863
SfaNI	GCATC	3 cut(s)	280, 517, 751
SfuI	TTCGAA	1 cut(s)	870
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	525, 635
Sse9I	AATT	6 cut(s)	102, 149, 175, 297, 578, 606
SsiI	CCGC	1 cut(s)	837
SspMI	CTAG	2 cut(s)	210, 864
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	360, 568
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	546, 698
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	3 cut(s)	120, 724, 870
TasI	AATT	6 cut(s)	102, 149, 175, 297, 578, 606
TatI	WGTACW	2 cut(s)	339, 686
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	5 cut(s)	117, 394, 826, 867, 872
TscAI	CASTG	2 cut(s)	488, 529
TseFI	GTSAC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	4 cut(s)	183, 347, 893, 899
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	2 cut(s)	488, 529
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	2 cut(s)	175, 578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XmiI	GTMKAC	1 cut(s)	724
XmnI	GAANNNNTTC	2 cut(s)	297, 803
XspI	CTAG	2 cut(s)	210, 864
ZrmI	AGTACT	1 cut(s)	688
Zsp2I	ATGCAT	2 cut(s)	163, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.