Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008743

Physical Location & Seq

Genomic Coordinates Forward (+)

3812431 .. 3813535

Gene Structure 1105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAGATCCCTATCATAGACTTCGGTGAGATCAATGGTGAAGGGAGGAGCAAGACAATGGCTCTTCTGCACCAAGCGTGCGAGCAATGGGGCTTCTTTCAAATTGACAACTATGGAATCGACAAAAAGCTGATGGAAAAAGTGAAGCAATTGGTAAATGCACACTATGAGGAGAATTTGAAAGAGAGCTTTTATCAGTCAGACATAGATAGATGCTTAGAGAAAGACGATGATATCTCTGACAAAGACTGGGAAACCGCCTTTTATGTGTGGCATCTCCCCACATCTAACATTGAAGAGATTCCAAATATCTCAGAGGATTTTTGCAAGGCAATGAACGAGTACATAGCTCAACTGATCAACCTGGCAGAGAAACTCTCCGAGCTCATGTGTGAGAATCTTGGTTTGGAGAAGAATGACATCAAGAAAGCATTTTCAGGTAGCAAGGGTCCTTGTGTCGGGACAAAAGTTGCGAAATATCCCAAGTGCTCTCAGCCAGAGCGTGTGAGAGGACTGCGAGAGCACACTGATGCCGGTGGAATCATACTCATGCTCCAAGAAGACCAAATTCCGGGACTTGAATTCTTCAAAGATGGCAAATGGGTTCCGATTCCACCATGCAAGAAGAACACCATCTTTGTGAACACAGGTGACCTATTGGAAGTGCTGACTAATGGAAGGTACAAAAGTACAGTGCACCGTGTTATGACAGACAAAGATGGAAGTCGGCTCTCCATTGCTACCTTCTATAACCCTGCCGGAGATGCCCTTATCTCTCCGGCTCCCAAACTCTTATACCCCAATAGCTTCCGGTTTCAAGATTACCTCAAGCTTTATGCCACCACAAAGTTCAATGACAAGGGCCCTAGATTTGAAACCATGAAACAAATGGCCCATAATGGGAACAATGGTTTCCATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042594 GO:0050896 GO:0051365 GO:0051716 GO:0070542 GO:0070887 GO:0071229 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071396 GO:0071398 GO:0071496 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

308

Amino Acids

35.04

Weight (kDa)

5.61

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 58	5.7e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	158 - 252	2.3e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19590 AT2G19590
fragaria_vesca	FvH4_1g07181 FvH4_1g07181 FvH4_1g07181 FvH4_1g07190
malus_domestica	MD15G1205100.v1.1
prunus_persica	Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1
pyrus_communis	pycom15g18190
rosa_chinensis	RchiOBHm_Chr2g0093091
rosa_laevigata	RLG00000016367
rosa_multiflora	Rmu_sc0006865.1_g000009
rosa_roxburghii	Rroxscaffold_2G00148520
rosa_rugosa	Rorug02G0032600 Rorug02G0032700
rosa_samantha	Rh2AG078000 Rh2BG079300 Rh2CG081700 Rh2DG077000
rosa_wichuraiana	Rw2G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	3 cut(s)	175, 567, 581
AfaI	GTAC	3 cut(s)	344, 683, 691
AfiI	CCNNNNNNNGG	3 cut(s)	458, 571, 900
AgsI	TTSAA	8 cut(s)	101, 181, 296, 581, 589, 818, 853, 875
AjnI	CCWGG	1 cut(s)	363
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	6 cut(s)	130, 189, 350, 385, 807, 832
AluI	AGCT	6 cut(s)	130, 189, 350, 385, 807, 832
Alw21I	GWGCWC	4 cut(s)	387, 491, 525, 699
Alw44I	GTGCAC	1 cut(s)	695
AoxI	GGCC	2 cut(s)	862, 891
ApaI	GGGCCC	1 cut(s)	866
ApaLI	GTGCAC	1 cut(s)	695
ApoI	RAATTY	3 cut(s)	175, 567, 581
Asp700I	GAANNNNTTC	1 cut(s)	300
AspS9I	GGNCC	4 cut(s)	449, 862, 863, 892
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	3 cut(s)	38, 50, 662
AvaII	GGWCC	1 cut(s)	449
BaeGI	GKGCMC	2 cut(s)	699, 866
BaeI	ACNNNNGTAYC	2 cut(s)	673, 706
BanII	GRGCYC	2 cut(s)	387, 866
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	4 cut(s)	387, 491, 525, 699
BccI	CCATC	4 cut(s)	127, 587, 641, 713
BciT130I	CCWGG	1 cut(s)	365
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	573
BfaI	CTAG	1 cut(s)	867
Bme1390I	CCNGG	2 cut(s)	365, 573
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	4 cut(s)	449, 862, 863, 892
BmiI	GGNNCC	4 cut(s)	450, 606, 783, 864
BmrFI	CCNGG	2 cut(s)	365, 573
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	4 cut(s)	203, 283, 520, 754
BmuI	ACTGGG	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	567
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	573
BsaBI	GATNNNNATC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	810
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	458, 571, 900
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	3 cut(s)	92, 339, 735
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	365
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	3 cut(s)	458, 571, 900
BseMI	GCAATG	3 cut(s)	92, 339, 735
BseMII	CTCAG	2 cut(s)	327, 506
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	2 cut(s)	61, 185
BseSI	GKGCMC	2 cut(s)	699, 866
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	864, 893
BsiHKAI	GWGCWC	4 cut(s)	387, 491, 525, 699
BsiSI	CCGG	5 cut(s)	534, 572, 759, 779, 811
BslFI	GGGAC	2 cut(s)	475, 588
BslI	CCNNNNNNNGG	3 cut(s)	458, 571, 900
BsmFI	GGGAC	2 cut(s)	475, 588
BsnI	GGCC	2 cut(s)	864, 893
Bsp120I	GGGCCC	1 cut(s)	862
Bsp1286I	GDGCHC	5 cut(s)	387, 491, 525, 699, 866
Bsp143I	GATC	3 cut(s)	6, 30, 357
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	2 cut(s)	864, 893
BspCNI	CTCAG	2 cut(s)	326, 505
BspLI	GGNNCC	4 cut(s)	450, 606, 783, 864
BspQI	GCTCTTC	1 cut(s)	69
BsrDI	GCAATG	3 cut(s)	92, 339, 735
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	533
BssMI	GATC	3 cut(s)	6, 30, 357
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	694, 701
Bst6I	CTCTTC	2 cut(s)	69, 291
BstC8I	GCNNGC	2 cut(s)	79, 83
BstDEI	CTNAG	3 cut(s)	217, 313, 492
BstEII	GGTNACC	1 cut(s)	650
BstKTI	GATC	3 cut(s)	9, 33, 360
BstMBI	GATC	3 cut(s)	6, 30, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstNI	CCWGG	1 cut(s)	365
BstPI	GGTNACC	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	363, 571
BstSLI	GKGCMC	2 cut(s)	699, 866
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	864, 893
BtsIMutI	CAGTG	2 cut(s)	525, 699
Cac8I	GCNNGC	2 cut(s)	79, 83
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	4 cut(s)	449, 862, 863, 892
Csp6I	GTAC	3 cut(s)	343, 682, 690
CviAII	CATG	4 cut(s)	388, 550, 618, 880
CviQI	GTAC	3 cut(s)	343, 682, 690
DdeI	CTNAG	3 cut(s)	217, 313, 492
DpnI	GATC	3 cut(s)	8, 32, 359
DpnII	GATC	3 cut(s)	6, 30, 357
Eam1104I	CTCTTC	2 cut(s)	69, 291
EarI	CTCTTC	2 cut(s)	69, 291
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	2 cut(s)	387, 866
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	449
Eco53kI	GAGCTC	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	3 cut(s)	449, 862, 863
EcoO65I	GGTNACC	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	363
EcoRV	GATATC	1 cut(s)	235
EcoT38I	GRGCYC	2 cut(s)	387, 866
FaeI	CATG	4 cut(s)	391, 553, 621, 883
FaqI	GGGAC	2 cut(s)	475, 588
FatI	CATG	4 cut(s)	387, 549, 617, 879
FbaI	TGATCA	1 cut(s)	357
FriOI	GRGCYC	2 cut(s)	387, 866
FspBI	CTAG	1 cut(s)	867
HaeIII	GGCC	2 cut(s)	864, 893
HapII	CCGG	5 cut(s)	534, 572, 759, 779, 811
Hin1II	CATG	4 cut(s)	391, 553, 621, 883
HindIII	AAGCTT	1 cut(s)	830
HinfI	GANTC	5 cut(s)	117, 301, 397, 540, 610
HpaII	CCGG	5 cut(s)	534, 572, 759, 779, 811
HphI	GGTGA	3 cut(s)	38, 50, 662
Hpy166II	GTNNAC	2 cut(s)	643, 697
Hpy188I	TCNGA	5 cut(s)	202, 241, 316, 382, 609
Hpy188III	TCNNGA	3 cut(s)	424, 460, 818
Hpy8I	GTNNAC	2 cut(s)	643, 697
HpyAV	CCTTC	3 cut(s)	35, 672, 754
HpyCH4III	ACNGT	2 cut(s)	694, 701
HpyCH4V	TGCA	5 cut(s)	70, 161, 327, 621, 697
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	3 cut(s)	217, 313, 492
Hsp92II	CATG	4 cut(s)	391, 553, 621, 883
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	6, 30, 357
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	3 cut(s)	48, 558, 787
LweI	GCATC	4 cut(s)	203, 283, 520, 754
MaeI	CTAG	1 cut(s)	867
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	3 cut(s)	8, 32, 359
MboI	GATC	3 cut(s)	6, 30, 357
MboII	GAAGA	6 cut(s)	56, 308, 424, 572, 577, 637
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	5 cut(s)	387, 491, 525, 699, 866
MluCI	AATT	5 cut(s)	102, 149, 175, 567, 581
MnlI	CCTC	5 cut(s)	39, 163, 310, 503, 836
MroXI	GAANNNNTTC	1 cut(s)	300
MslI	CAYNNNNRTG	3 cut(s)	528, 548, 638
MspI	CCGG	5 cut(s)	534, 572, 759, 779, 811
MspR9I	CCNGG	2 cut(s)	365, 573
MunI	CAATTG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	764
NciI	CCSGG	1 cut(s)	573
NdeII	GATC	3 cut(s)	6, 30, 357
NlaIII	CATG	4 cut(s)	391, 553, 621, 883
NlaIV	GGNNCC	4 cut(s)	450, 606, 783, 864
NmuCI	GTSAC	1 cut(s)	650
PciSI	GCTCTTC	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	5 cut(s)	117, 301, 397, 540, 610
PfoI	TCCNGGA	1 cut(s)	571
PpuMI	RGGWCCY	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	363
PspEI	GGTNACC	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	4 cut(s)	450, 606, 783, 864
PspOMI	GGGCCC	1 cut(s)	862
PspPI	GGNCC	4 cut(s)	449, 862, 863, 892
PspPPI	RGGWCCY	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	3 cut(s)	344, 683, 691
RsaNI	GTAC	3 cut(s)	343, 682, 690
RseI	CAYNNNNRTG	3 cut(s)	528, 548, 638
SacI	GAGCTC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	69
Sau3AI	GATC	3 cut(s)	6, 30, 357
Sau96I	GGNCC	4 cut(s)	449, 862, 863, 892
ScrFI	CCNGG	2 cut(s)	365, 573
SduI	GDGCHC	5 cut(s)	387, 491, 525, 699, 866
SfaNI	GCATC	4 cut(s)	203, 283, 520, 754
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	3 cut(s)	528, 548, 638
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
Sse9I	AATT	5 cut(s)	102, 149, 175, 567, 581
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	867
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	363, 571
TaaI	ACNGT	2 cut(s)	694, 701
TaqI	TCGA	1 cut(s)	120
TasI	AATT	5 cut(s)	102, 149, 175, 567, 581
TatI	WGTACW	2 cut(s)	342, 689
TfiI	GAWTC	5 cut(s)	117, 301, 397, 540, 610
TscAI	CASTG	2 cut(s)	532, 699
TseFI	GTSAC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	2 cut(s)	350, 896
TspRI	CASTG	2 cut(s)	532, 699
VneI	GTGCAC	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	3 cut(s)	175, 567, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.