Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008743

Physical Location & Seq

Genomic Coordinates Forward (+)

12904048 .. 12905178

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAAATACCTGTGATAGACTTTAATGAGCTCAACGGGGAAGCAAGGAGCAAAACGATGGCTCTTCTGCACCAAGCTTGTGAGAAATGGGGCTTCTTCCAAGTTGAGAACCACGGAATTGATAAGAAGTTGATGGATAAAGTGAAGCAATTGATAAATGAATACTATGAGGAAAATTTGAGAGAGAGCTTTTATAAGTCAGAGATAGCTAAAAGCTTAGATCAAGAAGTTACCTCGGAAGTAGACTGGGAAAGCTCATTTTTCATTTGGCATCGCCCCACATCAAATATTGAAGGGATTCCGAACTTCTCAGAGGATCATTGCAAAACAATGAATGAGTACATCGCTCAGCTGATTAAGATGGCAGAGAAACTTTCTGAGCTCATGTGTGAGAATCTCGGTTTGGAGAAGGGTCATATAAAGGATGCATTCTCTGGTGGCAAGGGTCCTTCTGTGGGAACAAAAGTTGCAAAATACCCTCAATGTCCTCAGCCAGAGCTTGTGAGAGGACTTCGGGAGCACACTGATGCTGGTGGGATCATACTCCTGCTCCAAGATGACCAAGTTCCAGGCCTCGAATTCTTGAAAGATGGAGAATGGTTTGCAATTCCACCATCCAAGAACAACACCATGTTTGTGAACATAGGTGACCAAGTGGAAGTGTTGAGTAATGGAAGGTACAAAAGTGTTTTGCACCGTGTGCTGGCAGACAAGAATGGAAGCCGACTATCCATTGCTACCTTCTACAATCCTGCCGGTGATGCCATCATCTCTCCCGCTCCCAAGCTCTTATACCCCAATCACCTCCGTTTTCAAGACTACCTGAAGCATTATGCCACCACAAAGTTCTCAGACAAGGGCCTCAGATTCGAAACAATGAAGCAAATGGCCAATAACCATAATGGGTTCCTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042594 GO:0050896 GO:0051365 GO:0051716 GO:0070542 GO:0070887 GO:0071229 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071396 GO:0071398 GO:0071496 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

306

Amino Acids

34.71

Weight (kDa)

5.84

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19590 AT2G19590
fragaria_vesca	FvH4_1g07181 FvH4_1g07181 FvH4_1g07181 FvH4_1g07190
malus_domestica	MD15G1205100.v1.1
prunus_persica	Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1
pyrus_communis	pycom15g18190
rosa_chinensis	RchiOBHm_Chr2g0093091
rosa_laevigata	RLG00000016367
rosa_multiflora	Rmu_sc0006865.1_g000009
rosa_roxburghii	Rroxscaffold_2G00148520
rosa_rugosa	Rorug02G0032600 Rorug02G0032700
rosa_samantha	Rh2AG078000 Rh2BG079300 Rh2CG081700 Rh2DG077000
rosa_wichuraiana	Rw2G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AccBSI	CCGCTC	1 cut(s)	779
AccI	GTMKAC	1 cut(s)	243
AciI	CCGC	1 cut(s)	777
AclWI	GGATC	2 cut(s)	324, 545
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	2 cut(s)	175, 578
AcuI	CTGAAG	1 cut(s)	845
AdeI	CACNNNGTG	1 cut(s)	700
AfaI	GTAC	2 cut(s)	341, 680
AfiI	CCNNNNNNNGG	2 cut(s)	455, 703
AgsI	TTSAA	3 cut(s)	293, 586, 815
AjnI	CCWGG	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
Alw21I	GWGCWC	3 cut(s)	33, 384, 522
AlwI	GGATC	2 cut(s)	324, 545
AoxI	GGCC	3 cut(s)	571, 859, 888
ApoI	RAATTY	2 cut(s)	175, 578
Asp700I	GAANNNNTTC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	446, 859
AsuHPI	GGTGA	3 cut(s)	659, 770, 794
AsuII	TTCGAA	1 cut(s)	870
AvaII	GGWCC	1 cut(s)	446
BaeI	ACNNNNGTAYC	2 cut(s)	670, 703
BalI	TGGCCA	1 cut(s)	890
BanII	GRGCYC	2 cut(s)	33, 384
Bbv12I	GWGCWC	3 cut(s)	33, 384, 522
BbvCI	CCTCAGC	1 cut(s)	489
BccI	CCATC	6 cut(s)	52, 127, 355, 584, 622, 773
BciT130I	CCWGG	1 cut(s)	570
BlpI	GCTNAGC	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	446, 859
BmiI	GGNNCC	2 cut(s)	447, 908
BmrFI	CCNGG	1 cut(s)	570
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	4 cut(s)	280, 415, 517, 751
BmuI	ACTGGG	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	870
BsaJI	CCNNGG	2 cut(s)	112, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 703
Bse118I	RCCGGY	1 cut(s)	755
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	2 cut(s)	319, 732
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	112, 234
BseGI	GGATG	2 cut(s)	430, 614
BseLI	CCNNNNNNNGG	2 cut(s)	455, 703
BseMI	GCAATG	2 cut(s)	319, 732
BseMII	CTCAG	6 cut(s)	324, 362, 369, 503, 864, 877
BseNI	ACTGG	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	573, 861, 890
BsiHKAI	GWGCWC	3 cut(s)	33, 384, 522
BsiSI	CCGG	1 cut(s)	756
BslI	CCNNNNNNNGG	2 cut(s)	455, 703
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	573, 861, 890
Bsp119I	TTCGAA	1 cut(s)	870
Bsp1286I	GDGCHC	3 cut(s)	33, 384, 522
Bsp143I	GATC	3 cut(s)	220, 316, 537
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	777
BspANI	GGCC	3 cut(s)	573, 861, 890
BspCNI	CTCAG	6 cut(s)	323, 361, 370, 502, 863, 876
BspLI	GGNNCC	2 cut(s)	447, 908
BspPI	GGATC	2 cut(s)	324, 545
BspQI	GCTCTTC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	870
BsrBI	CCGCTC	1 cut(s)	779
BsrDI	GCAATG	2 cut(s)	319, 732
BsrFI	RCCGGY	1 cut(s)	755
BsrI	ACTGG	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	755
BssECI	CCNNGG	2 cut(s)	112, 234
BssMI	GATC	3 cut(s)	220, 316, 537
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	1 cut(s)	698
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	700
BstBI	TTCGAA	1 cut(s)	870
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	7 cut(s)	217, 310, 348, 378, 489, 850, 863
BstDSI	CCRYGG	1 cut(s)	112
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	430, 614
BstKTI	GATC	3 cut(s)	223, 319, 540
BstMBI	GATC	3 cut(s)	220, 316, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	700, 761
BstNI	CCWGG	1 cut(s)	570
BstPI	GGTNACC	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	573, 861, 890
BtgI	CCRYGG	1 cut(s)	112
BtgZI	GCGATG	2 cut(s)	257, 328
BtsCI	GGATG	2 cut(s)	430, 614
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	705
Cfr10I	RCCGGY	1 cut(s)	755
Cfr13I	GGNCC	2 cut(s)	446, 859
Csp6I	GTAC	2 cut(s)	340, 679
CviAII	CATG	2 cut(s)	385, 631
CviQI	GTAC	2 cut(s)	340, 679
DdeI	CTNAG	7 cut(s)	217, 310, 348, 378, 489, 850, 863
DpnI	GATC	3 cut(s)	222, 318, 539
DpnII	GATC	3 cut(s)	220, 316, 537
DraIII	CACNNNGTG	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	2 cut(s)	31, 382
Eco147I	AGGCCT	1 cut(s)	573
Eco24I	GRGCYC	2 cut(s)	33, 384
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	2 cut(s)	31, 382
Eco57I	CTGAAG	1 cut(s)	845
Eco91I	GGTNACC	1 cut(s)	647
EcoICRI	GAGCTC	2 cut(s)	31, 382
EcoO109I	RGGNCCY	2 cut(s)	446, 859
EcoO65I	GGTNACC	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	33, 384
FaeI	CATG	2 cut(s)	388, 634
FatI	CATG	2 cut(s)	384, 630
FauI	CCCGC	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	2 cut(s)	437, 601
FriOI	GRGCYC	2 cut(s)	33, 384
HaeIII	GGCC	3 cut(s)	573, 861, 890
HapII	CCGG	1 cut(s)	756
Hin1II	CATG	2 cut(s)	388, 634
HindIII	AAGCTT	2 cut(s)	75, 214
HinfI	GANTC	3 cut(s)	298, 394, 867
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	3 cut(s)	659, 770, 794
Hpy166II	GTNNAC	2 cut(s)	244, 640
Hpy188I	TCNGA	7 cut(s)	202, 238, 303, 313, 379, 853, 866
Hpy188III	TCNNGA	4 cut(s)	224, 515, 583, 815
Hpy8I	GTNNAC	2 cut(s)	244, 640
HpyAV	CCTTC	5 cut(s)	287, 403, 459, 669, 751
HpyCH4III	ACNGT	1 cut(s)	698
HpyCH4V	TGCA	6 cut(s)	70, 324, 428, 470, 605, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	700, 761
HpyF3I	CTNAG	7 cut(s)	217, 310, 348, 378, 489, 850, 863
Hsp92II	CATG	2 cut(s)	388, 634
Kzo9I	GATC	3 cut(s)	220, 316, 537
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	4 cut(s)	48, 517, 555, 784
LweI	GCATC	4 cut(s)	280, 415, 517, 751
MaeIII	GTNAC	2 cut(s)	229, 647
MalI	GATC	3 cut(s)	222, 318, 539
MbiI	CCGCTC	1 cut(s)	779
MboI	GATC	3 cut(s)	220, 316, 537
MboII	GAAGA	2 cut(s)	56, 88
MfeI	CAATTG	1 cut(s)	149
MhlI	GDGCHC	3 cut(s)	33, 384, 522
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	5 cut(s)	117, 149, 175, 578, 606
MluNI	TGGCCA	1 cut(s)	890
MnlI	CCTC	9 cut(s)	163, 244, 307, 489, 498, 500, 584, 815, 872
Mox20I	TGGCCA	1 cut(s)	890
Mph1103I	ATGCAT	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	890
MseI	TTAA	2 cut(s)	24, 357
MslI	CAYNNNNRTG	2 cut(s)	525, 635
Msp20I	TGGCCA	1 cut(s)	890
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	1 cut(s)	756
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	700, 761
NdeII	GATC	3 cut(s)	220, 316, 537
NlaIII	CATG	2 cut(s)	388, 634
NlaIV	GGNNCC	2 cut(s)	447, 908
NmuCI	GTSAC	1 cut(s)	647
NsiI	ATGCAT	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	870
PceI	AGGCCT	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	69
PctI	GAATGC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	298, 394, 867
PpuMI	RGGWCCY	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	195
Psp124BI	GAGCTC	2 cut(s)	33, 384
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	568
PspEI	GGTNACC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	2 cut(s)	447, 908
PspPI	GGNCC	2 cut(s)	446, 859
PspPPI	RGGWCCY	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	2 cut(s)	341, 680
RsaNI	GTAC	2 cut(s)	340, 679
RseI	CAYNNNNRTG	2 cut(s)	525, 635
SacI	GAGCTC	2 cut(s)	33, 384
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	24, 357
Sau3AI	GATC	3 cut(s)	220, 316, 537
Sau96I	GGNCC	2 cut(s)	446, 859
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	3 cut(s)	33, 384, 522
SfaNI	GCATC	4 cut(s)	280, 415, 517, 751
SfuI	TTCGAA	1 cut(s)	870
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	525, 635
Sse9I	AATT	5 cut(s)	117, 149, 175, 578, 606
SseBI	AGGCCT	1 cut(s)	573
SsiI	CCGC	1 cut(s)	777
SspI	AATATT	1 cut(s)	289
SstI	GAGCTC	2 cut(s)	33, 384
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	1 cut(s)	698
TaqI	TCGA	2 cut(s)	576, 870
TasI	AATT	5 cut(s)	117, 149, 175, 578, 606
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	3 cut(s)	298, 394, 867
Tru1I	TTAA	2 cut(s)	24, 357
Tru9I	TTAA	2 cut(s)	24, 357
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	4 cut(s)	174, 253, 347, 893
TspGWI	ACGGA	2 cut(s)	129, 797
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	2 cut(s)	175, 578
XmiI	GTMKAC	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.