Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008743

Physical Location & Seq

Genomic Coordinates Reverse (-)

19339762 .. 19345253

Gene Structure 5492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G212000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGATATTTTCTGGGCCTATATATACTCCATTGTATAACCTATCTTCTACATCAGGATTAGAGAAAATGAAGGAGATGGGAATCCCTGTGATAGACTTTGATGAGCTCAATGGGGAAGAAAGGAGCAAAACGATGGATCTTCTGCACCAAGCTTGTGAGAAATGGGGATTCTTTCAAGTTGAGAACCATGGAATTGATAAACAGCTGATGGAGAAAGTGAAGCAATTGATAAATAAATACTATGAGGAAAATTTGAAAGAGAGCTTTTATAAGTCAGAGATGGCTAAAAGCTTAGAGCAAGATATTACCTCTGAAAAAGACTGGGAAAGCTCCTTTTTCATTTGGCATCGCCCCACATCTAATATTGAAGATATTCCAAACCTCTCAGACGATCTTCGCATAACAATGAATGAGTACATTCCTCAGCTGATTAAGATGGCAGAGAAACTTTCTGAGCTCATGTGTGAGAATCTTGGTTTGAATAAGGGTTATATAAAGGATGCATTCTGTGCTGGCAAGGGTCCTTCTGTGGGGACAAAAGTTGCAAAGTACCCTCAATGTCCTCAGCCAGAACTTGTTAGAGGACTTCGAGAGCACACTGATGCTGGTGGGATCATACTCTTGCTCCAAGATGACCAAGTTCCAGGTCTCGAATTCTTCAAAGATGGAGAATGGGTTGCAATTCCACCATCCAAGAACAACAGAATCTTTGTGAACATAGGTGACCAAGTGGAAGTGTTGAGTAATGGAAGGTACAAAAGTGTTTTGCACCGTGTCATGGCAGACAAAAATGGAAGTCGACTGTCCATTGCTACCTTCTATAATCCTGCTGGTGATGCAATTATCTCACCAGCTCCCAGACTCTTATACCCCAATCATGTCCGCTTTCAAGATTACCTGAAGTTTTATGCTACCACAAAGTTTTCTGACAAGGGCCGCAGATTCGAGTCCATGAAACAAATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042594 GO:0050896 GO:0051365 GO:0051716 GO:0070542 GO:0070887 GO:0071229 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071396 GO:0071398 GO:0071496 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

323

Amino Acids

36.86

Weight (kDa)

5.8

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19590 AT2G19590
fragaria_vesca	FvH4_1g07181 FvH4_1g07181 FvH4_1g07181 FvH4_1g07190
malus_domestica	MD15G1205100.v1.1
prunus_persica	Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1
pyrus_communis	pycom15g18190
rosa_chinensis	RchiOBHm_Chr2g0093091
rosa_laevigata	RLG00000016367
rosa_multiflora	Rmu_sc0006865.1_g000009
rosa_roxburghii	Rroxscaffold_2G00148520
rosa_rugosa	Rorug02G0032600 Rorug02G0032700
rosa_samantha	Rh2AG078000 Rh2BG079300 Rh2CG081700 Rh2DG077000
rosa_wichuraiana	Rw2G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AccI	GTMKAC	1 cut(s)	799
AciI	CCGC	2 cut(s)	883, 937
AclWI	GGATC	2 cut(s)	144, 620
AcsI	RAATTY	2 cut(s)	250, 653
AcuI	CTGAAG	1 cut(s)	920
AfaI	GTAC	3 cut(s)	416, 551, 755
AfiI	CCNNNNNNNGG	2 cut(s)	530, 778
AgsI	TTSAA	6 cut(s)	176, 256, 368, 481, 661, 890
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	9 cut(s)	106, 152, 205, 264, 291, 330, 427, 457, 854
AluI	AGCT	9 cut(s)	106, 152, 205, 264, 291, 330, 427, 457, 854
Alw21I	GWGCWC	3 cut(s)	108, 459, 597
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	2 cut(s)	144, 620
AoxI	GGCC	2 cut(s)	14, 934
ApoI	RAATTY	2 cut(s)	250, 653
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	14, 521, 934
AsuHPI	GGTGA	3 cut(s)	734, 840, 845
AvaII	GGWCC	1 cut(s)	521
BaeI	ACNNNNGTAYC	2 cut(s)	745, 778
BanII	GRGCYC	2 cut(s)	108, 459
Bbv12I	GWGCWC	3 cut(s)	108, 459, 597
BbvCI	CCTCAGC	2 cut(s)	423, 564
BccI	CCATC	7 cut(s)	70, 127, 202, 274, 430, 659, 697
BciT130I	CCWGG	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	653
BisI	GCNGC	1 cut(s)	937
BlsI	GCNGC	1 cut(s)	938
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	3 cut(s)	14, 521, 934
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	645
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	4 cut(s)	355, 490, 592, 826
BmuI	ACTGGG	1 cut(s)	331
Bpu10I	CCTNAGC	2 cut(s)	423, 564
BsaBI	GATNNNNATC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	1 cut(s)	187
BsaXI	ACNNNNNCTCC	4 cut(s)	609, 639, 660, 690
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 778
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	505, 689
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	530, 778
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	4 cut(s)	399, 437, 444, 578
BseNI	ACTGG	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	16, 936
BsiHKAI	GWGCWC	3 cut(s)	108, 459, 597
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	530, 778
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	2 cut(s)	16, 936
Bso31I	GGTCTC	1 cut(s)	653
Bsp1286I	GDGCHC	3 cut(s)	108, 459, 597
Bsp143I	GATC	3 cut(s)	136, 391, 612
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	2 cut(s)	883, 937
BspANI	GGCC	2 cut(s)	16, 936
BspCNI	CTCAG	4 cut(s)	398, 436, 445, 577
BspLI	GGNNCC	1 cut(s)	522
BspPI	GGATC	2 cut(s)	144, 620
BspTNI	GGTCTC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	3 cut(s)	136, 391, 612
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	2 cut(s)	773, 804
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	5 cut(s)	292, 385, 423, 453, 564
BstDSI	CCRYGG	1 cut(s)	187
BstEII	GGTNACC	1 cut(s)	722
BstF5I	GGATG	2 cut(s)	505, 689
BstKTI	GATC	3 cut(s)	139, 394, 615
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	3 cut(s)	136, 391, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 836
BstNI	CCWGG	1 cut(s)	645
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	1 cut(s)	643
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	16, 936
BtgI	CCRYGG	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	505, 689
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	14, 521, 934
Csp6I	GTAC	3 cut(s)	415, 550, 754
CviAII	CATG	5 cut(s)	188, 460, 778, 878, 952
CviQI	GTAC	3 cut(s)	415, 550, 754
DdeI	CTNAG	5 cut(s)	292, 385, 423, 453, 564
DpnI	GATC	3 cut(s)	138, 393, 614
DpnII	GATC	3 cut(s)	136, 391, 612
Ecl136II	GAGCTC	2 cut(s)	106, 457
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	108, 459
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	2 cut(s)	106, 457
Eco57I	CTGAAG	1 cut(s)	920
Eco91I	GGTNACC	1 cut(s)	722
EcoICRI	GAGCTC	2 cut(s)	106, 457
EcoO109I	RGGNCCY	1 cut(s)	521
EcoO65I	GGTNACC	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	505
EcoT38I	GRGCYC	2 cut(s)	108, 459
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	5 cut(s)	191, 463, 781, 881, 955
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	5 cut(s)	187, 459, 777, 877, 951
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	1 cut(s)	937
FokI	GGATG	2 cut(s)	512, 676
FriOI	GRGCYC	2 cut(s)	108, 459
Fsp4HI	GCNGC	1 cut(s)	937
GluI	GCNGC	1 cut(s)	937
HaeIII	GGCC	2 cut(s)	16, 936
Hin1II	CATG	5 cut(s)	191, 463, 781, 881, 955
HincII	GTYRAC	1 cut(s)	800
HindII	GTYRAC	1 cut(s)	800
HindIII	AAGCTT	2 cut(s)	150, 289
HinfI	GANTC	7 cut(s)	81, 168, 469, 705, 861, 942, 947
HphI	GGTGA	3 cut(s)	734, 840, 845
Hpy166II	GTNNAC	2 cut(s)	715, 800
Hpy188I	TCNGA	5 cut(s)	277, 313, 388, 454, 928
Hpy188III	TCNNGA	4 cut(s)	54, 590, 650, 890
Hpy8I	GTNNAC	2 cut(s)	715, 800
HpyAV	CCTTC	4 cut(s)	64, 534, 744, 826
HpyCH4III	ACNGT	2 cut(s)	773, 804
HpyCH4V	TGCA	7 cut(s)	145, 503, 545, 680, 769, 839, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 836
HpyF3I	CTNAG	5 cut(s)	292, 385, 423, 453, 564
Hsp92II	CATG	5 cut(s)	191, 463, 781, 881, 955
Kzo9I	GATC	3 cut(s)	136, 391, 612
LmnI	GCTCC	4 cut(s)	123, 335, 630, 859
LweI	GCATC	4 cut(s)	355, 490, 592, 826
MaeIII	GTNAC	1 cut(s)	722
MalI	GATC	3 cut(s)	138, 393, 614
MboI	GATC	3 cut(s)	136, 391, 612
MboII	GAAGA	6 cut(s)	36, 128, 131, 380, 386, 649
MfeI	CAATTG	1 cut(s)	224
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	3 cut(s)	108, 459, 597
MluCI	AATT	7 cut(s)	192, 224, 250, 653, 681, 840, 960
MlyI	GAGTC	2 cut(s)	855, 956
MnlI	CCTC	7 cut(s)	238, 319, 392, 432, 564, 573, 575
Mph1103I	ATGCAT	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	2 cut(s)	404, 600
MspA1I	CMGCKG	2 cut(s)	205, 427
MspR9I	CCNGG	1 cut(s)	645
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	2 cut(s)	509, 836
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	136, 391, 612
NlaIII	CATG	5 cut(s)	191, 463, 781, 881, 955
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	722
NsiI	ATGCAT	1 cut(s)	505
PctI	GAATGC	1 cut(s)	503
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	5 cut(s)	81, 168, 469, 705, 942
PkrI	GCNGC	1 cut(s)	938
PleI	GAGTC	2 cut(s)	855, 955
PpsI	GAGTC	2 cut(s)	855, 955
PpuMI	RGGWCCY	1 cut(s)	521
PsiI	TTATAA	1 cut(s)	270
Psp124BI	GAGCTC	2 cut(s)	108, 459
Psp5II	RGGWCCY	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	643
PspEI	GGTNACC	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	3 cut(s)	14, 521, 934
PspPPI	RGGWCCY	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	2 cut(s)	205, 427
RsaI	GTAC	3 cut(s)	416, 551, 755
RsaNI	GTAC	3 cut(s)	415, 550, 754
RseI	CAYNNNNRTG	2 cut(s)	404, 600
SacI	GAGCTC	2 cut(s)	108, 459
SalI	GTCGAC	1 cut(s)	798
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	937
Sau3AI	GATC	3 cut(s)	136, 391, 612
Sau96I	GGNCC	3 cut(s)	14, 521, 934
SchI	GAGTC	2 cut(s)	855, 956
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	3 cut(s)	108, 459, 597
SfaNI	GCATC	4 cut(s)	355, 490, 592, 826
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	2 cut(s)	404, 600
Sse9I	AATT	7 cut(s)	192, 224, 250, 653, 681, 840, 960
SsiI	CCGC	2 cut(s)	883, 937
SspI	AATATT	1 cut(s)	364
SstI	GAGCTC	2 cut(s)	108, 459
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	773, 804
TaqI	TCGA	4 cut(s)	589, 651, 799, 945
TasI	AATT	7 cut(s)	192, 224, 250, 653, 681, 840, 960
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	939
TfiI	GAWTC	5 cut(s)	81, 168, 469, 705, 942
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	4 cut(s)	83, 328, 422, 968
TspRI	CASTG	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	2 cut(s)	250, 653
XmiI	GTMKAC	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	372
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.