Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008743

Physical Location & Seq

Genomic Coordinates Forward (+)

5945594 .. 5946703

Gene Structure 1110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGATCCCTGTCATAGACTTTGGTGAGATCAATGGTGAAGAGAGGAGCAAGACAATGGCTCTCCTGAACCAAGCATGCGAGCGATGGGGCTTTTTTCAAATTGAGAACCATGGAATCGACAAAAAGCTGATGGACAAAGTGAAGCAATTGGTTAATGCACACTATGAGGAAAATTTGAAAGAGAGCTTTTATCAGTCAGAGATAGCTAGAAGCTTAGAGAAAGACGATACCTCTGACAAAGACTGGGAAACCACCTTTTTCGTCTGGCATCGCCCCACATCTAACATTGAAGAAATTCCAAACATCTCAGAGGATCTTTGCAAAACAATGAATGAGTATATAGCTCAGCTGATCAATCTGGCAGAGAAACTCTCTGAGCTCATGTGTGAGAATCTTGGTTTGGAGAAGGATGATATCAAGGATGCATTTTCAGGTAGCAAGGGTCCTTCTGTTGGGACAAAAGTTGCAAAATATCCCAAGTGCTCTCGGCCAGAACGTGTGAGAGGATTGCGAGAGCACACTGATGCTGGTGGGATCATACTGTTGCTCCAAGACGACCAAGTGCCGGGTCTAGAATTCTTCAAAGATGGCAAATGGGTTGCAATTCCACCGTCTAAGAACAACACCATCTTTGTGAACACAGGTGACCAACTGGAAGTGCTGAGTAATGGAAGGTACAAAAGTACTTTGCACCGTGTCTTGACAGACAAGAATGGAAGTCGACTCTCCATTGCTACCTTCTATAATCCTGCCGGAGATGCCCTTATCTCTCCAGCTCCCAAACTCTTATACCCCAGTAGCTTCCGTTTTCAAGATTACCTGAAGCTTTATGCCACCACAAAGTTCAATGACAAGGGCCCCAGATTCGAATCCATGAAACAAATGGCCAATGGGAACAGTGGTTTCCATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042594 GO:0050896 GO:0051365 GO:0051716 GO:0070542 GO:0070887 GO:0071229 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071396 GO:0071398 GO:0071496 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

306

Amino Acids

34.65

Weight (kDa)

5.65

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 60	6e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	157 - 251	1.6e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19590 AT2G19590
fragaria_vesca	FvH4_1g07181 FvH4_1g07181 FvH4_1g07181 FvH4_1g07190
malus_domestica	MD15G1205100.v1.1
prunus_persica	Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1 Prupe.7G212000_v2.0.a1
pyrus_communis	pycom15g18190
rosa_chinensis	RchiOBHm_Chr2g0093091
rosa_laevigata	RLG00000016367
rosa_multiflora	Rmu_sc0006865.1_g000009
rosa_roxburghii	Rroxscaffold_2G00148520
rosa_rugosa	Rorug02G0032600 Rorug02G0032700
rosa_samantha	Rh2AG078000 Rh2BG079300 Rh2CG081700 Rh2DG077000
rosa_wichuraiana	Rw2G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	724
AclWI	GGATC	2 cut(s)	324, 545
AcoI	YGGCCR	2 cut(s)	491, 888
AcsI	RAATTY	3 cut(s)	175, 297, 578
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	2 cut(s)	680, 688
AfiI	CCNNNNNNNGG	2 cut(s)	455, 568
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	6 cut(s)	101, 181, 293, 586, 815, 850
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
Alw21I	GWGCWC	3 cut(s)	384, 488, 522
AlwI	GGATC	2 cut(s)	324, 545
AoxI	GGCC	3 cut(s)	491, 859, 888
ApaI	GGGCCC	1 cut(s)	863
ApoI	RAATTY	3 cut(s)	175, 297, 578
Asp700I	GAANNNNTTC	1 cut(s)	297
AspS9I	GGNCC	3 cut(s)	446, 859, 860
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	38, 50, 659
AsuII	TTCGAA	1 cut(s)	870
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	863
BaeI	ACNNNNGTAYC	2 cut(s)	670, 703
BalI	TGGCCA	1 cut(s)	890
BanII	GRGCYC	2 cut(s)	384, 863
Bbv12I	GWGCWC	3 cut(s)	384, 488, 522
BccI	CCATC	4 cut(s)	81, 127, 584, 638
BclI	TGATCA	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	570
BfaI	CTAG	3 cut(s)	210, 575, 916
BlpI	GCTNAGC	1 cut(s)	348
BmcAI	AGTACT	1 cut(s)	688
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	3 cut(s)	446, 859, 860
BmiI	GGNNCC	3 cut(s)	447, 861, 862
BmrFI	CCNGG	1 cut(s)	570
BmrI	ACTGGG	2 cut(s)	256, 792
BmsI	GCATC	4 cut(s)	280, 415, 517, 751
BmuI	ACTGGG	2 cut(s)	256, 792
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	1 cut(s)	759
Bpu1102I	GCTNAGC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	870
BpuMI	CCSGG	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	871
BsaJI	CCNNGG	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 568
Bse1I	ACTGG	3 cut(s)	251, 660, 798
Bse3DI	GCAATG	1 cut(s)	732
Bse8I	GATNNNNATC	1 cut(s)	871
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	418, 430
BseJI	GATNNNNATC	1 cut(s)	871
BseLI	CCNNNNNNNGG	2 cut(s)	455, 568
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	4 cut(s)	324, 362, 369, 656
BseNI	ACTGG	3 cut(s)	251, 660, 798
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	863
BshFI	GGCC	3 cut(s)	493, 861, 890
BsiHKAI	GWGCWC	3 cut(s)	384, 488, 522
BsiSI	CCGG	2 cut(s)	569, 756
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	2 cut(s)	455, 568
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	493, 861, 890
Bsp119I	TTCGAA	1 cut(s)	870
Bsp120I	GGGCCC	1 cut(s)	859
Bsp1286I	GDGCHC	4 cut(s)	384, 488, 522, 863
Bsp143I	GATC	5 cut(s)	6, 30, 316, 354, 537
Bsp1720I	GCTNAGC	1 cut(s)	348
Bsp19I	CCATGG	1 cut(s)	112
BspANI	GGCC	3 cut(s)	493, 861, 890
BspCNI	CTCAG	4 cut(s)	323, 361, 370, 657
BspLI	GGNNCC	3 cut(s)	447, 861, 862
BspPI	GGATC	2 cut(s)	324, 545
BspT104I	TTCGAA	1 cut(s)	870
BsrDI	GCAATG	1 cut(s)	732
BsrI	ACTGG	3 cut(s)	251, 660, 798
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	5 cut(s)	6, 30, 316, 354, 537
BssT1I	CCWWGG	1 cut(s)	112
Bst4CI	ACNGT	4 cut(s)	546, 615, 698, 902
Bst6I	CTCTTC	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	870
BstC8I	GCNNGC	2 cut(s)	79, 83
BstDEI	CTNAG	6 cut(s)	217, 310, 348, 378, 618, 665
BstDSI	CCRYGG	1 cut(s)	112
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	418, 430
BstKTI	GATC	5 cut(s)	9, 33, 319, 357, 540
BstMBI	GATC	5 cut(s)	6, 30, 316, 354, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	761
BstNSI	RCATGY	1 cut(s)	81
BstPI	GGTNACC	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	568
BstSLI	GKGCMC	1 cut(s)	863
BstX2I	RGATCY	2 cut(s)	6, 316
BstYI	RGATCY	2 cut(s)	6, 316
BsuRI	GGCC	3 cut(s)	493, 861, 890
BtgI	CCRYGG	1 cut(s)	112
BtgZI	GCGATG	2 cut(s)	100, 257
BtsCI	GGATG	2 cut(s)	418, 430
BtsIMutI	CAGTG	2 cut(s)	522, 907
Cac8I	GCNNGC	2 cut(s)	79, 83
Cfr13I	GGNCC	3 cut(s)	446, 859, 860
Csp6I	GTAC	2 cut(s)	679, 687
CviAII	CATG	4 cut(s)	78, 113, 385, 877
CviQI	GTAC	2 cut(s)	679, 687
DdeI	CTNAG	6 cut(s)	217, 310, 348, 378, 618, 665
DpnI	GATC	5 cut(s)	8, 32, 318, 356, 539
DpnII	GATC	5 cut(s)	6, 30, 316, 354, 537
EaeI	YGGCCR	2 cut(s)	491, 888
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	384, 863
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	845
Eco91I	GGTNACC	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	382
EcoO109I	RGGNCCY	3 cut(s)	446, 859, 860
EcoO65I	GGTNACC	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	578
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	384, 863
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	4 cut(s)	81, 116, 388, 880
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	77, 112, 384, 876
FbaI	TGATCA	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	724
FokI	GGATG	2 cut(s)	425, 437
FriOI	GRGCYC	2 cut(s)	384, 863
FspBI	CTAG	3 cut(s)	210, 575, 916
GsuI	CTGGAG	1 cut(s)	759
HaeIII	GGCC	3 cut(s)	493, 861, 890
HapII	CCGG	2 cut(s)	569, 756
Hin1II	CATG	4 cut(s)	81, 116, 388, 880
HincII	GTYRAC	1 cut(s)	725
HindII	GTYRAC	1 cut(s)	725
HindIII	AAGCTT	2 cut(s)	214, 827
HinfI	GANTC	5 cut(s)	117, 394, 726, 867, 872
HpaII	CCGG	2 cut(s)	569, 756
HphI	GGTGA	3 cut(s)	38, 50, 659
Hpy166II	GTNNAC	2 cut(s)	640, 725
Hpy188I	TCNGA	4 cut(s)	202, 238, 313, 379
Hpy188III	TCNNGA	4 cut(s)	67, 575, 703, 815
Hpy8I	GTNNAC	2 cut(s)	640, 725
HpyAV	CCTTC	4 cut(s)	403, 459, 669, 751
HpyCH4III	ACNGT	4 cut(s)	546, 615, 698, 902
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	6 cut(s)	161, 324, 428, 470, 605, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	761
HpyF3I	CTNAG	6 cut(s)	217, 310, 348, 378, 618, 665
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	4 cut(s)	81, 116, 388, 880
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	5 cut(s)	6, 30, 316, 354, 537
LmnI	GCTCC	3 cut(s)	48, 555, 784
LweI	GCATC	4 cut(s)	280, 415, 517, 751
MaeI	CTAG	3 cut(s)	210, 575, 916
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	5 cut(s)	8, 32, 318, 356, 539
MboI	GATC	5 cut(s)	6, 30, 316, 354, 537
MboII	GAAGA	3 cut(s)	53, 305, 574
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	2 cut(s)	6, 316
MhlI	GDGCHC	4 cut(s)	384, 488, 522, 863
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	6 cut(s)	102, 149, 175, 297, 578, 606
MluNI	TGGCCA	1 cut(s)	890
MlyI	GAGTC	1 cut(s)	720
MnlI	CCTC	5 cut(s)	39, 163, 244, 307, 500
Mox20I	TGGCCA	1 cut(s)	890
Mph1103I	ATGCAT	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	890
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	525, 635
Msp20I	TGGCCA	1 cut(s)	890
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	2 cut(s)	569, 756
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	761
NciI	CCSGG	1 cut(s)	570
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	5 cut(s)	6, 30, 316, 354, 537
NlaIII	CATG	4 cut(s)	81, 116, 388, 880
NlaIV	GGNNCC	3 cut(s)	447, 861, 862
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	647
NsiI	ATGCAT	1 cut(s)	430
NspI	RCATGY	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	870
PaeI	GCATGC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	4 cut(s)	117, 394, 867, 872
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
PpuMI	RGGWCCY	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	446
PspEI	GGTNACC	1 cut(s)	647
PspN4I	GGNNCC	3 cut(s)	447, 861, 862
PspOMI	GGGCCC	1 cut(s)	859
PspPI	GGNCC	3 cut(s)	446, 859, 860
PspPPI	RGGWCCY	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	6, 316
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	2 cut(s)	680, 688
RsaNI	GTAC	2 cut(s)	679, 687
RseI	CAYNNNNRTG	2 cut(s)	525, 635
SacI	GAGCTC	1 cut(s)	384
SalI	GTCGAC	1 cut(s)	723
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	5 cut(s)	6, 30, 316, 354, 537
Sau96I	GGNCC	3 cut(s)	446, 859, 860
ScaI	AGTACT	1 cut(s)	688
SchI	GAGTC	1 cut(s)	720
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	4 cut(s)	384, 488, 522, 863
SfaNI	GCATC	4 cut(s)	280, 415, 517, 751
SfuI	TTCGAA	1 cut(s)	870
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	525, 635
SphI	GCATGC	1 cut(s)	81
Sse9I	AATT	6 cut(s)	102, 149, 175, 297, 578, 606
SspMI	CTAG	3 cut(s)	210, 575, 916
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	568
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	4 cut(s)	546, 615, 698, 902
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	3 cut(s)	120, 724, 870
TasI	AATT	6 cut(s)	102, 149, 175, 297, 578, 606
TatI	WGTACW	1 cut(s)	686
TfiI	GAWTC	4 cut(s)	117, 394, 867, 872
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	529, 907
TseFI	GTSAC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	2 cut(s)	347, 893
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	2 cut(s)	529, 907
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	3 cut(s)	175, 297, 578
XbaI	TCTAGA	1 cut(s)	574
XceI	RCATGY	1 cut(s)	81
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XmiI	GTMKAC	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	3 cut(s)	210, 575, 916
ZrmI	AGTACT	1 cut(s)	688
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.