FvH4_1g08370
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017476
Physical Location & Seq
Forward (+)
4420248 .. 4424860
4613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08370.t2

Sequence Viewer

Length: 813 bp
ATGGGGAGAAAGCCATGCTCTAACGAAAACAGTGTAAACAGGGGAGTCTGGTCTGCTGAGGAAGATGAAGCCCTTAAACGATACATAAGAACTCATGGACCATGTAAATGGAAAGAAGTTTCTCGTCGAGCTGAATTAAACCGTTGCCCGAAGAGTTGCAGACTGCGATGGCGGAATTATCTGAGGCCTGGTATTAAGAGAGGAAACATTTCTGAGGATGAAGAAGACCTCATTCTCAGAATGCACAAGCTTCTCGGAAATAGGTGGTCTCTCATAGCCGGAAGATTACCAGGACGAACAGACAATGAAATAAAGAACCACTGGATTTGTAATTTGAGTAAGAGATTCTTGGAGAAAGCTCCGCCAGACAACCAAATTATCAAGGCTCATGACAATTTTCATCGTCCTCGCGGTGAATCCAGTAACTGTAATTTCAAAGAAGTTGAGGATGTTTCTGGCACTGAAGATCAAGAGAAAGCAGTCCCATCTAAAAGTACTACAATAACTGAAAATTTACCACCATCTTCTTCTTTAGTAGTTTCTGATCAGCTTCCAGAACCAAAGGATTCTTCTGCTACTTTTCTAGTGGATCTTGAAATGTACCTGAATGATCATGACCTCCAAAATAGTACAGATATCGACCATGATTTGCACCTAGCAGAATGGATCAATCTATTAAGTGGAGATGACGGTGATTTGCACCAAGAAGAATTGGGTACAGAATTCATCAGTTTTCTGGCAGATGGAACTCAGGAGCTTCAAGCAGATTGGGATCAATTCATGGAAGAAGCTTTGTTATCATCACCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

271

Amino Acids

30.92

Weight (kDa)

5.14

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.8e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 109 5.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 113 6.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017476)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08370 FvH4_1g08370
rosa_chinensis RchiOBHm_Chr2g0094411 RchiOBHm_Chr2g0094451
rosa_laevigata RLG00000016493
rosa_multiflora Rmu_sc0003819.1_g000002 Rmu_sc0009959.1_g000001
rosa_rugosa Rorug02G0044100
rosa_samantha Rh2BG092300 Rh2CG094800 Rh2DG090900 Rh2DG091200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 411
AciI CCGC 3 cut(s) 172, 362, 411
AclWI GGATC 3 cut(s) 597, 674, 780
AcsI RAATTY 2 cut(s) 511, 722
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 4 cut(s) 496, 602, 631, 718
AgsI TTSAA 3 cut(s) 436, 596, 761
AjnI CCWGG 2 cut(s) 187, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 553, 585
AluBI AGCT 6 cut(s) 131, 250, 359, 550, 757, 791
AluI AGCT 6 cut(s) 131, 250, 359, 550, 757, 791
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 3 cut(s) 597, 674, 780
AlwNI CAGNNNCTG 1 cut(s) 426
AoxI GGCC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 511, 722
Asp700I GAANNNNTTC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 3 cut(s) 425, 704, 795
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 57
BccI CCATC 4 cut(s) 162, 493, 529, 737
BciT130I CCWGG 2 cut(s) 189, 291
BclI TGATCA 2 cut(s) 544, 610
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 2 cut(s) 584, 656
BmcAI AGTACT 1 cut(s) 496
Bme1390I CCNGG 2 cut(s) 189, 291
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 189, 291
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 771
BsaI GGTCTC 1 cut(s) 273
Bse1I ACTGG 2 cut(s) 326, 420
Bse8I GATNNNNATC 1 cut(s) 771
BseBI CCWGG 2 cut(s) 189, 291
BseGI GGATG 2 cut(s) 223, 454
BseJI GATNNNNATC 1 cut(s) 771
BseMII CTCAG 5 cut(s) 48, 173, 204, 250, 764
BseNI ACTGG 2 cut(s) 326, 420
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 273
Bsp143I GATC 6 cut(s) 466, 544, 589, 610, 666, 772
BspACI CCGC 3 cut(s) 172, 362, 411
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 5 cut(s) 49, 174, 205, 249, 763
BspFNI CGCG 1 cut(s) 411
BspHI TCATGA 3 cut(s) 388, 613, 809
BspPI GGATC 3 cut(s) 597, 674, 780
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 2 cut(s) 326, 420
BssMI GATC 6 cut(s) 466, 544, 589, 610, 666, 772
Bst2UI CCWGG 2 cut(s) 189, 291
Bst4CI ACNGT 4 cut(s) 32, 143, 428, 692
Bst6I CTCTTC 1 cut(s) 146
BstDEI CTNAG 5 cut(s) 57, 182, 213, 236, 750
BstF5I GGATG 2 cut(s) 223, 454
BstFNI CGCG 1 cut(s) 411
BstKTI GATC 6 cut(s) 469, 547, 592, 613, 669, 775
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 6 cut(s) 466, 544, 589, 610, 666, 772
BstNI CCWGG 2 cut(s) 189, 291
BstSCI CCNGG 2 cut(s) 187, 289
BstUI CGCG 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 589
BstXI CCANNNNNNTGG 1 cut(s) 108
BstYI RGATCY 1 cut(s) 589
BsuRI GGCC 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 181
BtsCI GGATG 2 cut(s) 223, 454
BtsIMutI CAGTG 3 cut(s) 37, 319, 459
CaiI CAGNNNCTG 1 cut(s) 426
CciI TCATGA 3 cut(s) 388, 613, 809
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 4 cut(s) 495, 601, 630, 717
CspCI CAANNNNNGTGG 2 cut(s) 308, 343
CviAII CATG 8 cut(s) 15, 95, 102, 389, 614, 644, 781, 810
CviQI GTAC 4 cut(s) 495, 601, 630, 717
DdeI CTNAG 5 cut(s) 57, 182, 213, 236, 750
DpnI GATC 6 cut(s) 468, 546, 591, 612, 668, 774
DpnII GATC 6 cut(s) 466, 544, 589, 610, 666, 772
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 2 cut(s) 187, 351
Eco147I AGGCCT 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 273
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 483
EcoRI GAATTC 1 cut(s) 722
EcoRII CCWGG 2 cut(s) 187, 289
EcoRV GATATC 1 cut(s) 637
FaeI CATG 8 cut(s) 18, 98, 105, 392, 617, 647, 784, 813
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 1 cut(s) 467
FatI CATG 8 cut(s) 14, 94, 101, 388, 613, 643, 780, 809
FbaI TGATCA 2 cut(s) 544, 610
FokI GGATG 2 cut(s) 230, 461
FspBI CTAG 2 cut(s) 584, 656
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 279
Hin1II CATG 8 cut(s) 18, 98, 105, 392, 617, 647, 784, 813
HindIII AAGCTT 2 cut(s) 248, 789
HinfI GANTC 4 cut(s) 45, 345, 416, 566
HpaII CCGG 1 cut(s) 279
HphI GGTGA 3 cut(s) 425, 704, 795
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 5 cut(s) 183, 214, 239, 257, 544
Hpy188III TCNNGA 7 cut(s) 389, 470, 554, 593, 614, 752, 810
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 129
HpyCH4III ACNGT 4 cut(s) 32, 143, 428, 692
HpyCH4V TGCA 4 cut(s) 159, 244, 652, 700
HpyF3I CTNAG 5 cut(s) 57, 182, 213, 236, 750
Hsp92II CATG 8 cut(s) 18, 98, 105, 392, 617, 647, 784, 813
Ksp22I TGATCA 2 cut(s) 544, 610
Kzo9I GATC 6 cut(s) 466, 544, 589, 610, 666, 772
LmnI GCTCC 2 cut(s) 364, 754
MaeI CTAG 2 cut(s) 584, 656
MaeIII GTNAC 1 cut(s) 422
MalI GATC 6 cut(s) 468, 546, 591, 612, 668, 774
MboI GATC 6 cut(s) 466, 544, 589, 610, 666, 772
MflI RGATCY 1 cut(s) 589
MlyI GAGTC 1 cut(s) 54
MnlI CCTC 8 cut(s) 52, 177, 194, 208, 239, 417, 439, 629
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 4 cut(s) 75, 137, 195, 677
MslI CAYNNNNRTG 2 cut(s) 106, 808
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 2 cut(s) 189, 291
Mva1269I GAATGC 1 cut(s) 246
MvaI CCWGG 2 cut(s) 189, 291
MvnI CGCG 1 cut(s) 411
NdeII GATC 6 cut(s) 466, 544, 589, 610, 666, 772
NlaIII CATG 8 cut(s) 18, 98, 105, 392, 617, 647, 784, 813
PagI TCATGA 3 cut(s) 388, 613, 809
PceI AGGCCT 1 cut(s) 187
PctI GAATGC 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 3 cut(s) 345, 416, 566
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 187, 289
PspGI CCWGG 2 cut(s) 187, 289
PspPI GGNCC 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 426
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 4 cut(s) 496, 602, 631, 718
RsaNI GTAC 4 cut(s) 495, 601, 630, 717
RseI CAYNNNNRTG 2 cut(s) 106, 808
SaqAI TTAA 4 cut(s) 75, 137, 195, 677
Sau3AI GATC 6 cut(s) 466, 544, 589, 610, 666, 772
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 496
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 189, 291
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 2 cut(s) 106, 808
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 3 cut(s) 172, 362, 411
SspMI CTAG 2 cut(s) 584, 656
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 187, 289
TaaI ACNGT 4 cut(s) 32, 143, 428, 692
TaqI TCGA 2 cut(s) 127, 639
TatI WGTACW 2 cut(s) 494, 629
TfiI GAWTC 3 cut(s) 345, 416, 566
Tru1I TTAA 4 cut(s) 75, 137, 195, 677
Tru9I TTAA 4 cut(s) 75, 137, 195, 677
TscAI CASTG 3 cut(s) 37, 326, 466
TspDTI ATGAA 6 cut(s) 81, 234, 321, 389, 715, 769
TspRI CASTG 3 cut(s) 37, 326, 466
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 2 cut(s) 511, 722
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 2 cut(s) 584, 656
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.