Rh2DG090900
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017476
Physical Location & Seq
Forward (+)
6999291 .. 7002946
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG090900.1

Sequence Viewer

Length: 840 bp
ATGGGAAGAAAACCCTGCTGTAACAAACAAGGGGTAAAAAAGGGAGCATGGTCTGTTGAGGAAGATGAAGTCCTCGTTCACTACATAGAAACACATGGAACAGGCAAATGGAGAGACATTCCTCAGAGAGCTGGGTTAAACCGGTGCGGAAAGAGCTGCAGACTGCGATGGCTGAATTATCTTAGGCCGGATATCAAGAGAGGAAACATTTCTGCCGATGACGATGAACTCATTTTTAGACTACACAATCTTCTTGGAAACAGGTGGACCCTTATAGCCGGAAGATTGCCTGGACGAACAGACAATGAAATAAAGAATCACTGGAATACTAATTTGAGCAAGAGGTCATTAGAGCAAGCTCCACACAATGACATTGAGGCTCATGATCATGATCATCATCATCAGCATGATGAATATCCTAGCAAGAAATTAAAAGAAGCTGAGGATATAATTTACACGGAAGATCAAAACAAGGCCATTCGAACAAAAGCATTTGAGCTCATGAAGGACCTAATTATCCCATCTACTATTGCTCTTGATGATAACAGTACCATAGACAACTCCCATCATCATGAAATTGAAAAGGCAATATCCTCTTCTTCTTCAGTAGTGGCTGATCTTCACCATCAAGAGCTGTCGAACTCGTCTGCTACTTTTGTTATGGATTTTGACATGTACTTATCCAACGAGTTGAAACGCACAGATGTGGCGGCGGCGGATGGAGAAGGAGGATTCAGCCCTCTTGATTATTTCCCAGTTGAACAGGGAACCGATGAGCTTGATCAAGATTGGATATTCATAGAGGATGCTTTATTAAGGTATACTTATCAAAATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

279

Amino Acids

32.07

Weight (kDa)

5.47

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 4.8e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 2.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 119 9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017476)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08370 FvH4_1g08370
rosa_chinensis RchiOBHm_Chr2g0094411 RchiOBHm_Chr2g0094451
rosa_laevigata RLG00000016493
rosa_multiflora Rmu_sc0003819.1_g000002 Rmu_sc0009959.1_g000001
rosa_rugosa Rorug02G0044100
rosa_samantha Rh2BG092300 Rh2CG094800 Rh2DG090900 Rh2DG091200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 821
AciI CCGC 4 cut(s) 147, 710, 713, 716
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 2 cut(s) 550, 677
AflIII ACRYGT 1 cut(s) 672
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 3 cut(s) 581, 694, 761
AjnI CCWGG 1 cut(s) 289
AleI CACNNNNGTG 1 cut(s) 704
AluBI AGCT 7 cut(s) 131, 156, 359, 440, 499, 634, 778
AluI AGCT 7 cut(s) 131, 156, 359, 440, 499, 634, 778
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 1 cut(s) 108
AoxI GGCC 2 cut(s) 185, 474
ApeKI GCWGC 1 cut(s) 156
AsiGI ACCGGT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 267, 508
AsuHPI GGTGA 1 cut(s) 614
AsuII TTCGAA 1 cut(s) 481
AvaII GGWCC 2 cut(s) 267, 508
BanII GRGCYC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 501
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 143
BccI CCATC 5 cut(s) 162, 529, 573, 633, 713
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 3 cut(s) 385, 391, 781
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 3 cut(s) 157, 711, 714
BlsI GCNGC 3 cut(s) 158, 712, 715
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 267, 508
BmgT120I GGNCC 2 cut(s) 267, 508
BmiI GGNNCC 2 cut(s) 269, 769
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 749
BmsI GCATC 1 cut(s) 796
BmuI ACTGGG 1 cut(s) 749
Bpu10I CCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 481
BsaBI GATNNNNATC 3 cut(s) 390, 396, 414
BsaWI WCCGGW 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 326, 755
Bse8I GATNNNNATC 3 cut(s) 390, 396, 414
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 2 cut(s) 724, 811
BseJI GATNNNNATC 3 cut(s) 390, 396, 414
BseMII CTCAG 2 cut(s) 137, 432
BseNI ACTGG 2 cut(s) 326, 755
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 2 cut(s) 187, 476
BshTI ACCGGT 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 501
BsiSI CCGG 3 cut(s) 142, 188, 279
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 2 cut(s) 187, 476
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 5 cut(s) 385, 391, 463, 616, 781
BspACI CCGC 4 cut(s) 147, 710, 713, 716
BspANI GGCC 2 cut(s) 187, 476
BspCNI CTCAG 2 cut(s) 136, 433
BspHI TCATGA 4 cut(s) 382, 388, 501, 571
BspLI GGNNCC 2 cut(s) 269, 769
BspMAI CTGCAG 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 481
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 2 cut(s) 326, 755
BssAI RCCGGY 1 cut(s) 141
BssMI GATC 5 cut(s) 385, 391, 463, 616, 781
BssNAI GTATAC 1 cut(s) 822
Bst1107I GTATAC 1 cut(s) 822
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 3 cut(s) 123, 182, 441
BstF5I GGATG 2 cut(s) 724, 811
BstKTI GATC 5 cut(s) 388, 394, 466, 619, 784
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 5 cut(s) 385, 391, 463, 616, 781
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 676
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 143
BstZ17I GTATAC 1 cut(s) 822
BsuRI GGCC 2 cut(s) 187, 476
BtgZI GCGATG 1 cut(s) 181
BtsCI GGATG 2 cut(s) 724, 811
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 357
CciI TCATGA 4 cut(s) 382, 388, 501, 571
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 2 cut(s) 267, 508
Csp6I GTAC 2 cut(s) 549, 676
CspAI ACCGGT 1 cut(s) 141
CviAII CATG 8 cut(s) 48, 95, 383, 389, 407, 502, 572, 673
CviQI GTAC 2 cut(s) 549, 676
DdeI CTNAG 3 cut(s) 123, 182, 441
DpnI GATC 5 cut(s) 387, 393, 465, 618, 783
DpnII GATC 5 cut(s) 385, 391, 463, 616, 781
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
EciI GGCGGA 1 cut(s) 731
Ecl136II GAGCTC 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 501
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 267, 508
Eco53kI GAGCTC 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 588
EcoICRI GAGCTC 1 cut(s) 499
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 8 cut(s) 51, 98, 386, 392, 410, 505, 575, 676
FalI AAGNNNNNCTT 2 cut(s) 808, 840
FatI CATG 8 cut(s) 47, 94, 382, 388, 406, 501, 571, 672
FbaI TGATCA 3 cut(s) 385, 391, 781
FblI GTMKAC 1 cut(s) 821
Fnu4HI GCNGC 3 cut(s) 157, 711, 714
FokI GGATG 2 cut(s) 731, 818
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 3 cut(s) 157, 711, 714
FspBI CTAG 1 cut(s) 420
GluI GCNGC 3 cut(s) 157, 711, 714
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 187, 476
HapII CCGG 3 cut(s) 142, 188, 279
Hin1II CATG 8 cut(s) 51, 98, 386, 392, 410, 505, 575, 676
HinfI GANTC 2 cut(s) 316, 732
HpaII CCGG 3 cut(s) 142, 188, 279
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 3 cut(s) 79, 267, 822
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 9 cut(s) 196, 383, 389, 502, 536, 572, 629, 743, 785
Hpy8I GTNNAC 3 cut(s) 79, 267, 822
HpyAV CCTTC 2 cut(s) 499, 719
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 3 cut(s) 123, 182, 441
Hsp92II CATG 8 cut(s) 51, 98, 386, 392, 410, 505, 575, 676
Ksp22I TGATCA 3 cut(s) 385, 391, 781
Kzo9I GATC 5 cut(s) 385, 391, 463, 616, 781
LmnI GCTCC 2 cut(s) 44, 364
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 796
MaeI CTAG 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 20
MalI GATC 5 cut(s) 387, 393, 465, 618, 783
MboI GATC 5 cut(s) 385, 391, 463, 616, 781
MboII GAAGA 9 cut(s) 18, 74, 242, 294, 473, 588, 591, 594, 611
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 7 cut(s) 175, 331, 428, 450, 513, 576, 832
MmeI TCCRAC 1 cut(s) 708
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 3 cut(s) 137, 431, 815
MslI CAYNNNNRTG 4 cut(s) 387, 405, 570, 704
MspI CCGG 3 cut(s) 142, 188, 279
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeII GATC 5 cut(s) 385, 391, 463, 616, 781
NlaIII CATG 8 cut(s) 51, 98, 386, 392, 410, 505, 575, 676
NlaIV GGNNCC 2 cut(s) 269, 769
NspI RCATGY 1 cut(s) 676
NspV TTCGAA 1 cut(s) 481
OliI CACNNNNGTG 1 cut(s) 704
PagI TCATGA 4 cut(s) 382, 388, 501, 571
PciI ACATGT 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 316, 732
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 3 cut(s) 158, 712, 715
PpuMI RGGWCCY 1 cut(s) 508
PscI ACATGT 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 269, 769
PspPI GGNCC 2 cut(s) 267, 508
PspPPI RGGWCCY 1 cut(s) 508
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 2 cut(s) 550, 677
RsaNI GTAC 2 cut(s) 549, 676
RseI CAYNNNNRTG 4 cut(s) 387, 405, 570, 704
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 3 cut(s) 137, 431, 815
SatI GCNGC 3 cut(s) 157, 711, 714
Sau3AI GATC 5 cut(s) 385, 391, 463, 616, 781
Sau96I GGNCC 2 cut(s) 267, 508
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 501
SfaNI GCATC 1 cut(s) 796
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 2 cut(s) 267, 508
SmiMI CAYNNNNRTG 4 cut(s) 387, 405, 570, 704
Sse9I AATT 7 cut(s) 175, 331, 428, 450, 513, 576, 832
SsiI CCGC 4 cut(s) 147, 710, 713, 716
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 2 cut(s) 481, 638
TasI AATT 7 cut(s) 175, 331, 428, 450, 513, 576, 832
TatI WGTACW 1 cut(s) 675
TauI GCSGC 2 cut(s) 713, 716
TfiI GAWTC 2 cut(s) 316, 732
Tru1I TTAA 3 cut(s) 137, 431, 815
Tru9I TTAA 3 cut(s) 137, 431, 815
TscAI CASTG 1 cut(s) 326
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 7 cut(s) 81, 240, 321, 426, 518, 588, 787
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 267, 508
XceI RCATGY 1 cut(s) 676
XmiI GTMKAC 1 cut(s) 821
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.