Rh2BG092300
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017476
Physical Location & Seq
Forward (+)
7218211 .. 7220468
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG092300.1

Sequence Viewer

Length: 687 bp
ATGGTGAGAAAACCATGCTGTAACAAAGACAGTGTGAACAAGGGAGCGTGGTCTGCTGAGGAAGATGAACTCCTAATTCGCTACATGAGAACACATGGAATATGCAAATGGAGAGACATTCCTCAAGGAGCTGGGTTAAATCGGTGTGAGAAGAGCTGCAGACTGCGATGGCGGAATTATCTGAGGCCTGATATCGTAAGAGGAAACATTTCTGATGATGAAGAAGACCTCATTATCAGATTACACAAGCTTCTTGGAAACAGGTGGTCCCTCATAGCCGGAAGGTTGCCCGGACGAACAGATAACGAGATAAAGAACCACTGGAATAGTAACTTGAGGAAAAGACTGTTGAAGAAAGCTCCACGCAATCAAAGTAAGGCTCATCATCCCCGTGGTGAACCAAGTAACTATAATTTAAAAGAAACCGAGGGTAGCACACACACCAAAAATAAAAATAAGGCCGGCCCATCTAAAATTACTACCGATCAGCATCAAGAACCGAAGAATTATTCTGCTACTTTTCTAATGGATCTTGAGATGTACACAAATGATCATGACCTTTTCATATCCGACCAGCTAAAAAGTACAGATATCGACCATGATTTCTACCTAGCAGAATGGATCGATCAATTATGTGAAGATCACGGTGATATGCACCGAGAAGAATTGGGTACAGCACGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

228

Amino Acids

26.66

Weight (kDa)

8.47

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 8.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 5.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 115 1.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017476)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08370 FvH4_1g08370
rosa_chinensis RchiOBHm_Chr2g0094411 RchiOBHm_Chr2g0094451
rosa_laevigata RLG00000016493
rosa_multiflora Rmu_sc0003819.1_g000002 Rmu_sc0009959.1_g000001
rosa_rugosa Rorug02G0044100
rosa_samantha Rh2BG092300 Rh2CG094800 Rh2DG090900 Rh2DG091200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AclWI GGATC 2 cut(s) 537, 629
AfaI GTAC 4 cut(s) 542, 586, 673, 682
AgsI TTSAA 1 cut(s) 352
AluBI AGCT 5 cut(s) 131, 156, 250, 359, 577
AluI AGCT 5 cut(s) 131, 156, 250, 359, 577
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 2 cut(s) 537, 629
AoxI GGCC 3 cut(s) 185, 459, 463
ApeKI GCWGC 1 cut(s) 156
Asp700I GAANNNNTTC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 267, 464
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 16, 407, 659
AvaII GGWCC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 162, 475
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 611
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 267, 464
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 3 cut(s) 108, 355, 554
BpuMI CCSGG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 624
BsaAI YACGTR 1 cut(s) 680
BsaBI GATNNNNATC 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 391, 426
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 326
Bse8I GATNNNNATC 1 cut(s) 489
BseCI ATCGAT 1 cut(s) 624
BseDI CCNNGG 2 cut(s) 391, 426
BseGI GGATG 1 cut(s) 385
BseJI GATNNNNATC 1 cut(s) 489
BseMII CTCAG 2 cut(s) 48, 173
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 3 cut(s) 187, 461, 465
BshVI ATCGAT 1 cut(s) 624
BsiSI CCGG 3 cut(s) 279, 291, 462
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 3 cut(s) 187, 461, 465
Bsp1407I TGTACA 1 cut(s) 540
Bsp143I GATC 6 cut(s) 484, 529, 550, 621, 625, 640
BspACI CCGC 1 cut(s) 172
BspANI GGCC 3 cut(s) 187, 461, 465
BspCNI CTCAG 2 cut(s) 49, 174
BspDI ATCGAT 1 cut(s) 624
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 1 cut(s) 269
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 537, 629
BspQI GCTCTTC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 461
BsrGI TGTACA 1 cut(s) 540
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 2 cut(s) 391, 426
BssMI GATC 6 cut(s) 484, 529, 550, 621, 625, 640
Bst4CI ACNGT 3 cut(s) 32, 348, 647
Bst6I CTCTTC 1 cut(s) 146
BstAUI TGTACA 1 cut(s) 540
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 57, 182
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 6 cut(s) 487, 532, 553, 624, 628, 643
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 6 cut(s) 484, 529, 550, 621, 625, 640
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
Bsu15I ATCGAT 1 cut(s) 624
BsuRI GGCC 3 cut(s) 187, 461, 465
BsuTUI ATCGAT 1 cut(s) 624
BtgI CCRYGG 1 cut(s) 391
BtgZI GCGATG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 37, 319
Cac8I GCNNGC 1 cut(s) 463
CciI TCATGA 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 2 cut(s) 267, 464
ClaI ATCGAT 1 cut(s) 624
Csp6I GTAC 4 cut(s) 541, 585, 672, 681
CviAII CATG 5 cut(s) 15, 85, 95, 554, 599
CviQI GTAC 4 cut(s) 541, 585, 672, 681
DdeI CTNAG 2 cut(s) 57, 182
DpnI GATC 6 cut(s) 486, 531, 552, 623, 627, 642
DpnII GATC 6 cut(s) 484, 529, 550, 621, 625, 640
DraI TTTAAA 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 187
Eco32I GATATC 2 cut(s) 193, 592
Eco47I GGWCC 1 cut(s) 267
EcoRV GATATC 2 cut(s) 193, 592
FaeI CATG 5 cut(s) 18, 88, 98, 557, 602
FaqI GGGAC 1 cut(s) 253
FatI CATG 5 cut(s) 14, 84, 94, 553, 598
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 1 cut(s) 372
FseI GGCCGGCC 1 cut(s) 465
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 611
GluI GCNGC 1 cut(s) 157
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 3 cut(s) 187, 461, 465
HapII CCGG 3 cut(s) 279, 291, 462
Hin1II CATG 5 cut(s) 18, 88, 98, 557, 602
HindIII AAGCTT 1 cut(s) 248
HpaII CCGG 3 cut(s) 279, 291, 462
HphI GGTGA 3 cut(s) 16, 407, 659
Hpy166II GTNNAC 3 cut(s) 37, 398, 543
Hpy188I TCNGA 4 cut(s) 183, 214, 239, 571
Hpy188III TCNNGA 3 cut(s) 494, 533, 554
Hpy8I GTNNAC 3 cut(s) 37, 398, 543
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 3 cut(s) 32, 348, 647
HpyCH4IV ACGT 1 cut(s) 679
HpyCH4V TGCA 3 cut(s) 105, 159, 655
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 57, 182
HpySE526I ACGT 1 cut(s) 679
Hsp92II CATG 5 cut(s) 18, 88, 98, 557, 602
KroI GCCGGC 1 cut(s) 461
KroNI GCCGGC 1 cut(s) 463
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 6 cut(s) 484, 529, 550, 621, 625, 640
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 3 cut(s) 44, 128, 364
LpnPI CCDG 8 cut(s) 117, 201, 247, 292, 304, 307, 475, 587
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 499
MaeI CTAG 1 cut(s) 611
MaeII ACGT 1 cut(s) 679
MaeIII GTNAC 3 cut(s) 20, 329, 404
MalI GATC 6 cut(s) 486, 531, 552, 623, 627, 642
MboI GATC 6 cut(s) 484, 529, 550, 621, 625, 640
MboII GAAGA 8 cut(s) 74, 163, 233, 236, 364, 514, 650, 674
MflI RGATCY 1 cut(s) 529
MluCI AATT 7 cut(s) 75, 175, 412, 474, 505, 629, 665
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 8 cut(s) 52, 132, 177, 194, 239, 281, 330, 421
MroNI GCCGGC 1 cut(s) 461
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 3 cut(s) 137, 416, 685
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 3 cut(s) 279, 291, 462
MspR9I CCNGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 53
NaeI GCCGGC 1 cut(s) 463
NciI CCSGG 1 cut(s) 291
NdeII GATC 6 cut(s) 484, 529, 550, 621, 625, 640
NgoMIV GCCGGC 1 cut(s) 461
NlaIII CATG 5 cut(s) 18, 88, 98, 557, 602
NlaIV GGNNCC 1 cut(s) 269
PagI TCATGA 1 cut(s) 553
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 680
PspFI CCCAGC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 2 cut(s) 267, 464
PstI CTGCAG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 529
RigI GGCCGGCC 1 cut(s) 465
RsaI GTAC 4 cut(s) 542, 586, 673, 682
RsaNI GTAC 4 cut(s) 541, 585, 672, 681
RseI CAYNNNNRTG 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 137, 416, 685
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 6 cut(s) 484, 529, 550, 621, 625, 640
Sau96I GGNCC 2 cut(s) 267, 464
ScrFI CCNGG 1 cut(s) 291
SfaNI GCATC 1 cut(s) 499
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 3 cut(s) 123, 334, 533
SmoI CTYRAG 3 cut(s) 123, 334, 533
Sse9I AATT 7 cut(s) 75, 175, 412, 474, 505, 629, 665
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 172
SspMI CTAG 1 cut(s) 611
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 32, 348, 647
TaiI ACGT 1 cut(s) 682
TaqI TCGA 2 cut(s) 594, 624
TasI AATT 7 cut(s) 75, 175, 412, 474, 505, 629, 665
TatI WGTACW 2 cut(s) 540, 584
Tru1I TTAA 3 cut(s) 137, 416, 685
Tru9I TTAA 3 cut(s) 137, 416, 685
TscAI CASTG 2 cut(s) 37, 326
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 3 cut(s) 81, 234, 553
TspRI CASTG 2 cut(s) 37, 326
VpaK11BI GGWCC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.