Rh2DG091200
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017476
Physical Location & Seq
Forward (+)
7070027 .. 7072446
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG091200.1

Sequence Viewer

Length: 831 bp
ATGTTAATGCGCATTAAAACCGCCTTGCACAATAATGCATCATCACATGTCTGTGTGACTGCATATCTCTCCAGGCGAGTTTCTCAGATCCGCAGTAGTGGTCTAAAGCCCTCTATATATCCAGACTTCCGGTTCCAGAGAAAGATGGTGAGAAAACCATGCTGTAACAAAGAAAGTGTGAACAAGGGAGCGTGGTCTGCTGAGGAAGATGAACTCCTAATTCGCTACATGAGAACACATGGAATATGCAAATGGAGAGACATTCCTCAAGGAGCTGGGTTAAATCGGTGTGAGAAGAGCTGCAGACTGCGATGGCGGAATTATCTGAGGCCTGATATCGTAAGAGGAAACATTTCTGATGATGAAGAAGACCTCATTATCAGATTACACAAGCTTCTTGGAAACAGGTGGTCCCTCATAGCCGGAAGGTTGCCCGGACGAACAGATAACGAGATAAAGAACCACTGGAATAGTAACTTGAGGAAAAGACTGTTGAAGAAAGCTGCACGCAATCAAAGTAAGGCTCATCATCCCCGTGGTGAACCAAGTAACTACAATTTAAAAGAAGCCGAGGGTAGCACACACACCAAAGATAAAAATAAGGCCGGCCCATCTAAAATTACTACCGATCAGCATCAAGAACCGAAGAATTATTCTGCTACTTTTCTAATGGATCTTGAGATGTACACAAATGATCATGACCCTTTCATATCCGACCAGCTAAAAAGTACAGATATCGACCATGATTTCTACCTAGCAGAATGGATCGATCAATTATGTGAAGATCATGGTGATATGCACCGAGAAGAATTGGGTACAGCACGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

276

Amino Acids

32.15

Weight (kDa)

9.26

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 62 - 109 1.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 65 - 123 7.4e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 115 - 160 1.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 119 - 163 2.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017476)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08370 FvH4_1g08370
rosa_chinensis RchiOBHm_Chr2g0094411 RchiOBHm_Chr2g0094451
rosa_laevigata RLG00000016493
rosa_multiflora Rmu_sc0003819.1_g000002 Rmu_sc0009959.1_g000001
rosa_rugosa Rorug02G0044100
rosa_samantha Rh2BG092300 Rh2CG094800 Rh2DG090900 Rh2DG091200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 11
AciI CCGC 3 cut(s) 21, 91, 316
AclWI GGATC 3 cut(s) 82, 681, 773
AfaI GTAC 4 cut(s) 686, 730, 817, 826
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 1 cut(s) 496
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 5 cut(s) 275, 300, 394, 503, 721
AluI AGCT 5 cut(s) 275, 300, 394, 503, 721
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 3 cut(s) 82, 681, 773
AoxI GGCC 3 cut(s) 329, 603, 607
ApeKI GCWGC 2 cut(s) 300, 503
Asp700I GAANNNNTTC 1 cut(s) 352
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 411, 608
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 3 cut(s) 160, 551, 803
AvaII GGWCC 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 375
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 287, 490
BccI CCATC 3 cut(s) 139, 306, 619
BciT130I CCWGG 1 cut(s) 73
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 755
BfmI CTRYAG 1 cut(s) 301
BisI GCNGC 2 cut(s) 301, 504
BlsI GCNGC 2 cut(s) 302, 505
Bme1390I CCNGG 2 cut(s) 73, 435
Bme18I GGWCC 1 cut(s) 411
BmgT120I GGNCC 2 cut(s) 411, 608
BmiI GGNNCC 2 cut(s) 134, 413
BmrFI CCNGG 2 cut(s) 73, 435
BmsI GCATC 2 cut(s) 47, 643
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 201
BpuEI CTTGAG 3 cut(s) 252, 499, 698
BpuMI CCSGG 1 cut(s) 435
Bsa29I ATCGAT 1 cut(s) 768
BsaAI YACGTR 1 cut(s) 824
BsaBI GATNNNNATC 1 cut(s) 633
BsaJI CCNNGG 2 cut(s) 535, 570
BsaWI WCCGGW 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 1 cut(s) 470
Bse8I GATNNNNATC 1 cut(s) 633
BseBI CCWGG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 768
BseDI CCNNGG 2 cut(s) 535, 570
BseGI GGATG 1 cut(s) 529
BseJI GATNNNNATC 1 cut(s) 633
BseMII CTCAG 3 cut(s) 98, 192, 317
BseNI ACTGG 1 cut(s) 470
BseXI GCAGC 2 cut(s) 287, 490
BseYI CCCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 489
BshFI GGCC 3 cut(s) 331, 605, 609
BshVI ATCGAT 1 cut(s) 768
BsiSI CCGG 4 cut(s) 130, 423, 435, 606
BslFI GGGAC 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 3 cut(s) 331, 605, 609
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 7 cut(s) 87, 628, 673, 694, 765, 769, 784
BspACI CCGC 3 cut(s) 21, 91, 316
BspANI GGCC 3 cut(s) 331, 605, 609
BspCNI CTCAG 3 cut(s) 97, 193, 318
BspDI ATCGAT 1 cut(s) 768
BspHI TCATGA 1 cut(s) 697
BspLI GGNNCC 2 cut(s) 134, 413
BspMAI CTGCAG 1 cut(s) 305
BspPI GGATC 3 cut(s) 82, 681, 773
BspQI GCTCTTC 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 605
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 1 cut(s) 470
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 2 cut(s) 535, 570
BssMI GATC 7 cut(s) 87, 628, 673, 694, 765, 769, 784
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 492
Bst6I CTCTTC 1 cut(s) 290
BstAUI TGTACA 1 cut(s) 684
BstBAI YACGTR 1 cut(s) 824
BstC8I GCNNGC 2 cut(s) 508, 607
BstDEI CTNAG 3 cut(s) 84, 201, 326
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 7 cut(s) 90, 631, 676, 697, 768, 772, 787
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 7 cut(s) 87, 628, 673, 694, 765, 769, 784
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 71, 433
BstSFI CTRYAG 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 287, 490
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 2 cut(s) 87, 673
BstYI RGATCY 2 cut(s) 87, 673
Bsu15I ATCGAT 1 cut(s) 768
BsuRI GGCC 3 cut(s) 331, 605, 609
BsuTUI ATCGAT 1 cut(s) 768
BtgI CCRYGG 1 cut(s) 535
BtgZI GCGATG 1 cut(s) 325
BtsCI GGATG 1 cut(s) 529
BtsIMutI CAGTG 1 cut(s) 463
Cac8I GCNNGC 2 cut(s) 508, 607
CciI TCATGA 1 cut(s) 697
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 411, 608
ClaI ATCGAT 1 cut(s) 768
Csp6I GTAC 4 cut(s) 685, 729, 816, 825
CviAII CATG 7 cut(s) 47, 159, 229, 239, 698, 743, 788
CviQI GTAC 4 cut(s) 685, 729, 816, 825
DdeI CTNAG 3 cut(s) 84, 201, 326
DpnI GATC 7 cut(s) 89, 630, 675, 696, 767, 771, 786
DpnII GATC 7 cut(s) 87, 628, 673, 694, 765, 769, 784
DraI TTTAAA 1 cut(s) 561
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
EciI GGCGGA 1 cut(s) 331
Eco147I AGGCCT 1 cut(s) 331
Eco32I GATATC 2 cut(s) 337, 736
Eco47I GGWCC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 71
EcoRV GATATC 2 cut(s) 337, 736
EcoT22I ATGCAT 1 cut(s) 40
FaeI CATG 7 cut(s) 50, 162, 232, 242, 701, 746, 791
FaqI GGGAC 1 cut(s) 397
FatI CATG 7 cut(s) 46, 158, 228, 238, 697, 742, 787
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 2 cut(s) 301, 504
FokI GGATG 1 cut(s) 516
FseI GGCCGGCC 1 cut(s) 609
Fsp4HI GCNGC 2 cut(s) 301, 504
FspAI RTGCGCAY 1 cut(s) 11
FspBI CTAG 1 cut(s) 755
FspI TGCGCA 1 cut(s) 11
GlaI GCGC 1 cut(s) 11
GluI GCNGC 2 cut(s) 301, 504
GsaI CCCAGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 3 cut(s) 331, 605, 609
HapII CCGG 4 cut(s) 130, 423, 435, 606
HhaI GCGC 1 cut(s) 12
Hin1II CATG 7 cut(s) 50, 162, 232, 242, 701, 746, 791
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 392
HpaII CCGG 4 cut(s) 130, 423, 435, 606
HphI GGTGA 3 cut(s) 160, 551, 803
Hpy166II GTNNAC 3 cut(s) 181, 542, 687
Hpy188I TCNGA 5 cut(s) 87, 327, 358, 383, 715
Hpy188III TCNNGA 5 cut(s) 122, 136, 638, 677, 698
Hpy8I GTNNAC 3 cut(s) 181, 542, 687
HpyAV CCTTC 1 cut(s) 420
HpyCH4III ACNGT 1 cut(s) 492
HpyCH4IV ACGT 1 cut(s) 823
HpyCH4V TGCA 7 cut(s) 28, 38, 62, 249, 303, 506, 799
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 3 cut(s) 84, 201, 326
HpySE526I ACGT 1 cut(s) 823
Hsp92II CATG 7 cut(s) 50, 162, 232, 242, 701, 746, 791
HspAI GCGC 1 cut(s) 10
KroI GCCGGC 1 cut(s) 605
KroNI GCCGGC 1 cut(s) 607
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 7 cut(s) 87, 628, 673, 694, 765, 769, 784
LguI GCTCTTC 1 cut(s) 290
LmnI GCTCC 2 cut(s) 188, 272
Lsp1109I GCAGC 2 cut(s) 287, 490
LweI GCATC 2 cut(s) 47, 643
MaeI CTAG 1 cut(s) 755
MaeII ACGT 1 cut(s) 823
MaeIII GTNAC 4 cut(s) 55, 164, 473, 548
MalI GATC 7 cut(s) 89, 630, 675, 696, 767, 771, 786
MboI GATC 7 cut(s) 87, 628, 673, 694, 765, 769, 784
MboII GAAGA 8 cut(s) 218, 307, 377, 380, 508, 658, 794, 818
MflI RGATCY 2 cut(s) 87, 673
MluCI AATT 7 cut(s) 219, 319, 556, 618, 649, 773, 809
MmeI TCCRAC 1 cut(s) 738
MnlI CCTC 9 cut(s) 121, 196, 276, 321, 338, 383, 425, 474, 565
Mph1103I ATGCAT 1 cut(s) 40
MroNI GCCGGC 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 352
MseI TTAA 5 cut(s) 5, 15, 281, 560, 829
MslI CAYNNNNRTG 3 cut(s) 33, 51, 534
MspI CCGG 4 cut(s) 130, 423, 435, 606
MspR9I CCNGG 2 cut(s) 73, 435
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 197
NaeI GCCGGC 1 cut(s) 607
NciI CCSGG 1 cut(s) 435
NdeII GATC 7 cut(s) 87, 628, 673, 694, 765, 769, 784
NgoMIV GCCGGC 1 cut(s) 605
NlaIII CATG 7 cut(s) 50, 162, 232, 242, 701, 746, 791
NlaIV GGNNCC 2 cut(s) 134, 413
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 55
NsbI TGCGCA 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 40
NspI RCATGY 1 cut(s) 50
PagI TCATGA 1 cut(s) 697
PceI AGGCCT 1 cut(s) 331
PciI ACATGT 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 290
PdiI GCCGGC 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 352
PkrI GCNGC 2 cut(s) 302, 505
Ppu21I YACGTR 1 cut(s) 824
PscI ACATGT 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 134, 413
PspPI GGNCC 2 cut(s) 411, 608
PstI CTGCAG 1 cut(s) 305
PsuI RGATCY 2 cut(s) 87, 673
RigI GGCCGGCC 1 cut(s) 609
RsaI GTAC 4 cut(s) 686, 730, 817, 826
RsaNI GTAC 4 cut(s) 685, 729, 816, 825
RseI CAYNNNNRTG 3 cut(s) 33, 51, 534
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 5 cut(s) 5, 15, 281, 560, 829
SatI GCNGC 2 cut(s) 301, 504
Sau3AI GATC 7 cut(s) 87, 628, 673, 694, 765, 769, 784
Sau96I GGNCC 2 cut(s) 411, 608
ScrFI CCNGG 2 cut(s) 73, 435
SfaNI GCATC 2 cut(s) 47, 643
SfcI CTRYAG 1 cut(s) 301
SinI GGWCC 1 cut(s) 411
SmiMI CAYNNNNRTG 3 cut(s) 33, 51, 534
SmlI CTYRAG 3 cut(s) 267, 478, 677
SmoI CTYRAG 3 cut(s) 267, 478, 677
Sse9I AATT 7 cut(s) 219, 319, 556, 618, 649, 773, 809
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 3 cut(s) 21, 91, 316
SspMI CTAG 1 cut(s) 755
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 2 cut(s) 71, 433
TaaI ACNGT 1 cut(s) 492
TaiI ACGT 1 cut(s) 826
TaqI TCGA 2 cut(s) 738, 768
TasI AATT 7 cut(s) 219, 319, 556, 618, 649, 773, 809
TatI WGTACW 2 cut(s) 684, 728
Tru1I TTAA 5 cut(s) 5, 15, 281, 560, 829
Tru9I TTAA 5 cut(s) 5, 15, 281, 560, 829
TscAI CASTG 1 cut(s) 470
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 300, 503
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 225, 378, 697
TspRI CASTG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 411
XceI RCATGY 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 352
XspI CTAG 1 cut(s) 755
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.