Rorug02G0044100
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017476
Physical Location & Seq
Reverse (-)
3456976 .. 3460177
3202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0044100.1

Sequence Viewer

Length: 474 bp
ATGCGATCCAGGCCACCACAGATTCGACGTCGCCCGGCAAAACTCGAACCTGCACCTTCAAGCCATTCCGCCGATGAGTACAGCGAGGCATCTGTGAAACCCAGTCCAGATCGGATCAGTCCGATCCGATTAATCCAGGCCTACGACGTCGCCCGGCCACCCTCGATCCTGCACCTCCGATGCGCTTCGGCTCCGCCTCGTTCCAATCGTACTAGGAGTCAAGTAGTTGGGTGGCCGCGGGTGAGATCGATGAGAAAGAAGACTTTAGAGTTGGAGAAGAGCAGCAGGAAATATGTAAAAGTTGGTGCTGATGGAGCTCGATCCTTACCTGAGGAAAGTAGACTTGGAGATGTGCTTCTTATGAAACATGCAGTAGTGAATGGAACAGTGGAGGAGTATAAGCATTATGTAGTAGTGACATATGAAGATAAGGATGGCGACTGGATGTTAGTTGGAGAGGTTCCTTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

157

Amino Acids

17.83

Weight (kDa)

9.94

Isoelectric Point (pI)

70.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 135 - 157 2.3e-08 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017476)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08370 FvH4_1g08370
rosa_chinensis RchiOBHm_Chr2g0094411 RchiOBHm_Chr2g0094451
rosa_laevigata RLG00000016493
rosa_multiflora Rmu_sc0003819.1_g000002 Rmu_sc0009959.1_g000001
rosa_rugosa Rorug02G0044100
rosa_samantha Rh2BG092300 Rh2CG094800 Rh2DG090900 Rh2DG091200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 31, 150
Acc36I ACCTGC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 340
AccII CGCG 1 cut(s) 238
AciI CCGC 4 cut(s) 69, 194, 236, 238
AclWI GGATC 4 cut(s) 118, 122, 160, 315
AcoI YGGCCR 2 cut(s) 155, 233
AcyI GRCGYC 2 cut(s) 28, 147
AfaI GTAC 2 cut(s) 80, 211
AgsI TTSAA 1 cut(s) 60
AjnI CCWGG 2 cut(s) 8, 135
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
Alw21I GWGCWC 1 cut(s) 319
AlwI GGATC 4 cut(s) 118, 122, 160, 315
AoxI GGCC 4 cut(s) 11, 138, 155, 233
ApeKI GCWGC 1 cut(s) 282
AseI ATTAAT 1 cut(s) 131
AspLEI GCGC 1 cut(s) 185
AsuC2I CCSGG 2 cut(s) 35, 154
AsuHPI GGTGA 1 cut(s) 253
AxyI CCTNAGG 1 cut(s) 330
BanII GRGCYC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 294
BccI CCATC 2 cut(s) 305, 428
BciT130I CCWGG 2 cut(s) 10, 137
BcnI CCSGG 2 cut(s) 35, 154
BfaI CTAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 58
BisI GCNGC 2 cut(s) 236, 283
BlsI GCNGC 2 cut(s) 237, 284
Bme1390I CCNGG 4 cut(s) 10, 35, 137, 154
BmiI GGNNCC 2 cut(s) 192, 462
BmrFI CCNGG 4 cut(s) 10, 35, 137, 154
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 98, 170
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 35, 154
Bsa29I ATCGAT 1 cut(s) 248
BsaHI GRCGYC 2 cut(s) 28, 147
BsaJI CCNNGG 2 cut(s) 236, 464
Bse1I ACTGG 2 cut(s) 102, 446
Bse21I CCTNAGG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 10, 137
BseCI ATCGAT 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 236, 464
BseGI GGATG 2 cut(s) 439, 450
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 102, 446
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 294
BsgI GTGCAG 2 cut(s) 36, 155
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 4 cut(s) 13, 140, 157, 235
BshVI ATCGAT 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 2 cut(s) 35, 154
BsnI GGCC 4 cut(s) 13, 140, 157, 235
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 7 cut(s) 5, 109, 114, 123, 165, 245, 320
BspACI CCGC 4 cut(s) 69, 194, 236, 238
BspANI GGCC 4 cut(s) 13, 140, 157, 235
BspCNI CTCAG 1 cut(s) 322
BspDI ATCGAT 1 cut(s) 248
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 192, 462
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 4 cut(s) 118, 122, 160, 315
BspQI GCTCTTC 1 cut(s) 272
BsrI ACTGG 2 cut(s) 102, 446
BssECI CCNNGG 2 cut(s) 236, 464
BssMI GATC 7 cut(s) 5, 109, 114, 123, 165, 245, 320
BssNI GRCGYC 2 cut(s) 28, 147
BssT1I CCWWGG 1 cut(s) 464
Bst2UI CCWGG 2 cut(s) 10, 137
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 1 cut(s) 272
BstACI GRCGYC 2 cut(s) 28, 147
BstDEI CTNAG 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 439, 450
BstFNI CGCG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 7 cut(s) 8, 112, 117, 126, 168, 248, 323
BstMBI GATC 7 cut(s) 5, 109, 114, 123, 165, 245, 320
BstMWI GCNNNNNNNGC 2 cut(s) 10, 314
BstNI CCWGG 2 cut(s) 10, 137
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 4 cut(s) 8, 33, 135, 152
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 266
Bsu15I ATCGAT 1 cut(s) 248
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 4 cut(s) 13, 140, 157, 235
BsuTUI ATCGAT 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 2 cut(s) 439, 450
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 185
Cfr42I CCGCGG 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 248
Csp6I GTAC 2 cut(s) 79, 210
CviAII CATG 1 cut(s) 368
CviJI RGCY 7 cut(s) 13, 63, 140, 157, 191, 235, 317
CviKI_1 RGCY 7 cut(s) 13, 63, 140, 157, 191, 235, 317
CviQI GTAC 2 cut(s) 79, 210
DdeI CTNAG 1 cut(s) 330
DpnI GATC 7 cut(s) 7, 111, 116, 125, 167, 247, 322
DpnII GATC 7 cut(s) 5, 109, 114, 123, 165, 245, 320
EaeI YGGCCR 2 cut(s) 155, 233
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
EciI GGCGGA 2 cut(s) 58, 183
Ecl136II GAGCTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 464
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 317
Eco81I CCTNAGG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 317
EcoRII CCWGG 2 cut(s) 8, 135
EcoT14I CCWWGG 1 cut(s) 464
EcoT38I GRGCYC 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 1 cut(s) 371
FaiI YATR 7 cut(s) 294, 362, 369, 399, 408, 421, 423
FatI CATG 1 cut(s) 367
FauI CCCGC 1 cut(s) 231
FauNDI CATATG 1 cut(s) 421
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 236, 283
FokI GGATG 2 cut(s) 446, 457
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 2 cut(s) 236, 283
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 236, 283
HaeIII GGCC 4 cut(s) 13, 140, 157, 235
HapII CCGG 2 cut(s) 35, 154
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 2 cut(s) 28, 147
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 2 cut(s) 22, 217
HpaII CCGG 2 cut(s) 35, 154
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 4 cut(s) 114, 123, 128, 179
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 341
Hpy99I CGWCG 4 cut(s) 30, 33, 149, 152
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 2 cut(s) 28, 147
HpyCH4V TGCA 3 cut(s) 53, 172, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 314
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 2 cut(s) 28, 147
Hsp92I GRCGYC 2 cut(s) 28, 147
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 1 cut(s) 183
KspI CCGCGG 1 cut(s) 239
Kzo9I GATC 7 cut(s) 5, 109, 114, 123, 165, 245, 320
LguI GCTCTTC 1 cut(s) 272
LmnI GCTCC 2 cut(s) 196, 314
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 2 cut(s) 98, 170
MaeI CTAG 1 cut(s) 213
MaeII ACGT 2 cut(s) 28, 147
MaeIII GTNAC 1 cut(s) 415
MalI GATC 7 cut(s) 7, 111, 116, 125, 167, 247, 322
MboI GATC 7 cut(s) 5, 109, 114, 123, 165, 245, 320
MboII GAAGA 3 cut(s) 271, 289, 437
MhlI GDGCHC 1 cut(s) 319
MlyI GAGTC 1 cut(s) 226
MmeI TCCRAC 2 cut(s) 252, 433
MnlI CCTC 7 cut(s) 79, 172, 185, 207, 325, 385, 451
MseI TTAA 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 2 cut(s) 35, 154
MspR9I CCNGG 4 cut(s) 10, 35, 137, 154
MvaI CCWGG 2 cut(s) 10, 137
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 10, 314
NciI CCSGG 2 cut(s) 35, 154
NdeI CATATG 1 cut(s) 421
NdeII GATC 7 cut(s) 5, 109, 114, 123, 165, 245, 320
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 2 cut(s) 192, 462
NmuCI GTSAC 1 cut(s) 415
NspI RCATGY 1 cut(s) 371
PceI AGGCCT 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 237, 284
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PshBI ATTAAT 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 8, 135
PspGI CCWGG 2 cut(s) 8, 135
PspN4I GGNNCC 2 cut(s) 192, 462
RsaI GTAC 2 cut(s) 80, 211
RsaNI GTAC 2 cut(s) 79, 210
SacI GAGCTC 1 cut(s) 319
SacII CCGCGG 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 2 cut(s) 236, 283
Sau3AI GATC 7 cut(s) 5, 109, 114, 123, 165, 245, 320
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 4 cut(s) 10, 35, 137, 154
SduI GDGCHC 1 cut(s) 319
SetI ASST 8 cut(s) 31, 52, 58, 150, 177, 319, 331, 462
SfaNI GCATC 2 cut(s) 98, 170
Sfr303I CCGCGG 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 239
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 4 cut(s) 69, 194, 236, 238
SspMI CTAG 1 cut(s) 213
SstI GAGCTC 1 cut(s) 319
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 4 cut(s) 8, 33, 135, 152
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 2 cut(s) 31, 150
TaqI TCGA 5 cut(s) 25, 45, 164, 248, 319
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 377, 438
TspRI CASTG 1 cut(s) 393
VspI ATTAAT 1 cut(s) 131
XceI RCATGY 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 1 cut(s) 213
ZraI GACGTC 2 cut(s) 29, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.