Rmu_sc0009959.1_g000001
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009959.1
OG0017476
Physical Location & Seq
Reverse (-)
1 .. 5383
5383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009959.1_g000001.1.cds

Sequence Viewer

Length: 700 bp
atgcagacgcctcagctggtgcaactgctttgctattggatctgcttgtttctcatgcctcagggccatagcataggccttgttcactgtgggaagcgaatccagaccaattatgttgctgtggactgtagcgtagctttcgttaagacccataaggaatttcattgttttctatgtctccatgtaacacttcacttcggtggcaatattgcaagtgcaggcaggaaagccacaaagcgaatccgcagtagtggtctaaagccctcgatatatccagacttccagttccagagaaagatggtgagaaaaccatgctgtaacaaagacagtgtgaacaagggagcgtggtctgctgaggaagatgaactcctaattcgctacatgagaacacatggaatgtgcaaatggagagacattcctcaaggagctgggttaaatcggtgtgagaagagctgcagactgcgatggcggaattatctgaggcctgatatcgtaagaggaaacatttctgatgatgaagaagacctcattatcagattacacaagcttcttggaaacaggtggtccctcatagccggaaggttgcccggacgaacagataacgagataaagaaccactggaatagtaacttgaggaaaagactgttgaagaaagctccacgcaatcaaagtaaggctcatcatccccgtggtgaaccaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

233

Amino Acids

27.02

Weight (kDa)

9.95

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017476)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08370 FvH4_1g08370
rosa_chinensis RchiOBHm_Chr2g0094411 RchiOBHm_Chr2g0094451
rosa_laevigata RLG00000016493
rosa_multiflora Rmu_sc0003819.1_g000002 Rmu_sc0009959.1_g000001
rosa_rugosa Rorug02G0044100
rosa_samantha Rh2BG092300 Rh2CG094800 Rh2DG090900 Rh2DG091200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 244, 469
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 8
AgsI TTSAA 1 cut(s) 649
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 6 cut(s) 16, 137, 428, 453, 547, 656
AluI AGCT 6 cut(s) 16, 137, 428, 453, 547, 656
Alw26I GTCTC 2 cut(s) 182, 405
AlwI GGATC 1 cut(s) 47
AoxI GGCC 3 cut(s) 64, 76, 482
ApeKI GCWGC 1 cut(s) 453
ApoI RAATTY 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 505
AspS9I GGNCC 2 cut(s) 64, 564
AsuC2I CCSGG 1 cut(s) 588
AsuHPI GGTGA 1 cut(s) 313
AvaII GGWCC 1 cut(s) 564
AxyI CCTNAGG 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 528
BbvCI CCTCAGC 2 cut(s) 12, 354
BbvI GCAGC 1 cut(s) 440
BccI CCATC 2 cut(s) 292, 459
BcnI CCSGG 1 cut(s) 588
BcoDI GTCTC 2 cut(s) 182, 405
BfmI CTRYAG 2 cut(s) 127, 454
BisI GCNGC 1 cut(s) 454
BlsI GCNGC 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 588
Bme18I GGWCC 1 cut(s) 564
BmgT120I GGNCC 2 cut(s) 64, 564
BmiI GGNNCC 1 cut(s) 566
BmrFI CCNGG 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 528
Bpu10I CCTNAGC 2 cut(s) 12, 354
BpuEI CTTGAG 2 cut(s) 405, 652
BpuMI CCSGG 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 688
Bse1I ACTGG 2 cut(s) 283, 623
Bse21I CCTNAGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 688
BseGI GGATG 1 cut(s) 682
BseMII CTCAG 4 cut(s) 26, 74, 345, 470
BseNI ACTGG 2 cut(s) 283, 623
BseXI GCAGC 1 cut(s) 440
BseYI CCCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 237
BshFI GGCC 3 cut(s) 66, 78, 484
BsiSI CCGG 2 cut(s) 576, 588
BslFI GGGAC 1 cut(s) 550
BsmAI GTCTC 2 cut(s) 182, 405
BsmFI GGGAC 1 cut(s) 550
BsnI GGCC 3 cut(s) 66, 78, 484
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 2 cut(s) 244, 469
BspANI GGCC 3 cut(s) 66, 78, 484
BspCNI CTCAG 4 cut(s) 25, 73, 346, 471
BspLI GGNNCC 1 cut(s) 566
BspMAI CTGCAG 1 cut(s) 458
BspPI GGATC 1 cut(s) 47
BspQI GCTCTTC 1 cut(s) 443
BsrI ACTGG 2 cut(s) 283, 623
BssECI CCNNGG 1 cut(s) 688
BssMI GATC 1 cut(s) 39
BssNI GRCGYC 1 cut(s) 8
Bst4CI ACNGT 4 cut(s) 89, 128, 329, 645
Bst6I CTCTTC 1 cut(s) 443
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 4 cut(s) 12, 60, 354, 479
BstDSI CCRYGG 1 cut(s) 688
BstF5I GGATG 1 cut(s) 682
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 182, 405
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 586
BstSFI CTRYAG 2 cut(s) 127, 454
BstV1I GCAGC 1 cut(s) 440
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 60
BsuRI GGCC 3 cut(s) 66, 78, 484
BtgI CCRYGG 1 cut(s) 688
BtgZI GCGATG 1 cut(s) 478
BtsCI GGATG 1 cut(s) 682
BtsIMutI CAGTG 3 cut(s) 85, 334, 616
Cac8I GCNNGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 64, 564
CseI GACGC 1 cut(s) 16
CviAII CATG 5 cut(s) 55, 182, 312, 382, 392
DdeI CTNAG 4 cut(s) 12, 60, 354, 479
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
EciI GGCGGA 1 cut(s) 484
Eco147I AGGCCT 2 cut(s) 78, 484
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 564
Eco81I CCTNAGG 1 cut(s) 60
EcoRV GATATC 1 cut(s) 490
FaeI CATG 5 cut(s) 58, 185, 315, 385, 395
FaqI GGGAC 1 cut(s) 550
FatI CATG 5 cut(s) 54, 181, 311, 381, 391
Fnu4HI GCNGC 1 cut(s) 454
FokI GGATG 1 cut(s) 669
Fsp4HI GCNGC 1 cut(s) 454
GluI GCNGC 1 cut(s) 454
GsaI CCCAGC 1 cut(s) 432
HaeIII GGCC 3 cut(s) 66, 78, 484
HapII CCGG 2 cut(s) 576, 588
HgaI GACGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 5 cut(s) 58, 185, 315, 385, 395
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 2 cut(s) 99, 240
HpaII CCGG 2 cut(s) 576, 588
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 4 cut(s) 85, 124, 334, 695
Hpy188I TCNGA 3 cut(s) 480, 511, 536
Hpy188III TCNNGA 3 cut(s) 103, 275, 289
Hpy8I GTNNAC 4 cut(s) 85, 124, 334, 695
HpyAV CCTTC 1 cut(s) 573
HpyCH4III ACNGT 4 cut(s) 89, 128, 329, 645
HpyCH4V TGCA 6 cut(s) 4, 22, 212, 218, 402, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 4 cut(s) 12, 60, 354, 479
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 5 cut(s) 58, 185, 315, 385, 395
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 3 cut(s) 341, 425, 661
Lsp1109I GCAGC 1 cut(s) 440
MaeIII GTNAC 3 cut(s) 184, 317, 626
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 5 cut(s) 371, 460, 530, 533, 661
MflI RGATCY 1 cut(s) 39
MluCI AATT 4 cut(s) 109, 158, 372, 472
MroXI GAANNNNTTC 1 cut(s) 505
MseI TTAA 2 cut(s) 144, 434
MslI CAYNNNNRTG 2 cut(s) 198, 687
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 2 cut(s) 576, 588
MspR9I CCNGG 1 cut(s) 588
MwoI GCNNNNNNNGC 1 cut(s) 350
NciI CCSGG 1 cut(s) 588
NdeII GATC 1 cut(s) 39
NlaIII CATG 5 cut(s) 58, 185, 315, 385, 395
NlaIV GGNNCC 1 cut(s) 566
OliI CACNNNNGTG 1 cut(s) 198
PceI AGGCCT 2 cut(s) 78, 484
PciSI GCTCTTC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 505
PfeI GAWTC 2 cut(s) 99, 240
PkrI GCNGC 1 cut(s) 455
PspFI CCCAGC 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 566
PspPI GGNCC 2 cut(s) 64, 564
PstI CTGCAG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 16
RseI CAYNNNNRTG 2 cut(s) 198, 687
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 144, 434
SatI GCNGC 1 cut(s) 454
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 2 cut(s) 64, 564
ScrFI CCNGG 1 cut(s) 588
SetI ASST 9 cut(s) 18, 139, 430, 455, 528, 549, 563, 584, 658
SfcI CTRYAG 2 cut(s) 127, 454
SinI GGWCC 1 cut(s) 564
SmiMI CAYNNNNRTG 2 cut(s) 198, 687
SmlI CTYRAG 2 cut(s) 420, 631
SmoI CTYRAG 2 cut(s) 420, 631
Sse9I AATT 4 cut(s) 109, 158, 372, 472
SseBI AGGCCT 2 cut(s) 78, 484
SsiI CCGC 2 cut(s) 244, 469
SspI AATATT 1 cut(s) 208
StuI AGGCCT 2 cut(s) 78, 484
StyD4I CCNGG 1 cut(s) 586
TaaI ACNGT 4 cut(s) 89, 128, 329, 645
TaqI TCGA 1 cut(s) 266
TasI AATT 4 cut(s) 109, 158, 372, 472
TfiI GAWTC 2 cut(s) 99, 240
Tru1I TTAA 2 cut(s) 144, 434
Tru9I TTAA 2 cut(s) 144, 434
TscAI CASTG 3 cut(s) 92, 334, 623
TseI GCWGC 1 cut(s) 453
TspDTI ATGAA 3 cut(s) 152, 378, 531
TspRI CASTG 3 cut(s) 92, 334, 623
VpaK11BI GGWCC 1 cut(s) 564
XapI RAATTY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.