Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016236

Physical Location & Seq

Genomic Coordinates Forward (+)

4728416 .. 4731669

Gene Structure 3254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCGTGTACGATGTACCTTGTAGCAGCTGGCTTATATAAACACAACATGCATATCAGTTCATTCTATCAAAAGAAAAACCTCATCCTTGTGAAAGTTCATCATTTCTTCCTTATGGCTCTGAAACATTTCCTAATCTCATGTTCAGGCTTTGTCTTAGCTTGTTTGCTTGCATTCACACTTCAAGTCTACTTGTTCTCACCAATATCCCCAGTCTCACTGGAACTGCCTCCGCCATCTTCTTCTTCACTTCCTCAAAACCACATATTACAGAGAGTGATTAAGCTCGGAGATGGAGTGCTTCCGAAACCAGAAGATATTGCTTTGGATAAGGAAGGCACACTCTACACGGCCACTAGAGACGGTTGGTTGAAAAGGCTTCACAGAGATGGGATTTGGGAGGATTGGAAGAAGTTGAATAGTCATACACTTCTTGGAATTACTATCACCAACGATGGTGATCTTGTTGCCTGTGATGTTGATCAGGGTTTGCTTAAGGTTACTGAAAATGGGGTCACGGTTCTTGCTTCACACGTTAATGGATCCAAAATAAGATTTGCAGATGATGTGATTGAAGCTTCAGATGGGAGTCTCTACTTTAGTGTTGCAAGCACCAAATTTGGACTCCATGATTGGTATCTGGATGTGCTTGAGGCAAAACCTCACGGGCAGCTGCTCAAGTATGACCCTTCATCAAATGAGACTTCAATTCTACTTGAGGGTTTGGCTTTCGCTAATGGGGTTGCAGTCTCAAAAGATCAGGATTATCTGGTGGTCTGCGAAACATGGAAATTCAGGTGCCTAAGGTATTGGTTGCAGGGAGAGAAGAGAGGGCAGACGGAGATCTTCATTGAGAACCTTCCTGGTGGACCGGACAACATCAATCTAGCTCCAGATGGGTCTTTCTGGATTGCTCTACTTCAGTTGACTTCAGATGGGCTGGAGTTTGTGCACAGCTCCAGAACAGCAAAACACTTGGTAGCAACATCCGGGAAGCTAGTAGAACTAGTCAATGGACTACATAAGAAAGCTACGGTGGTGAATGTGGGAGCTGATGGCAGGATTATCAAGAAGCTCGAGGATCCGAATGGAAGTGTGATGTCGTTTGTGACATCTGTTGTGGAATTTGAGGATCATCTCTACTTTGGGAGCTTGCAGAACAACTTCATCGGCAAGTTGCCGCTGAATGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004064 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0009986 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

399

Amino Acids

44.05

Weight (kDa)

6.2

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	88 - 127	1.5e-07	Strictosidine synthase-like, N-terminal
SGL	PF08450	144 - 307	9.2e-11	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	192 - 274	3.7e-25	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08910
malus_domestica	MD02G1094500.v1.1 MD15G1219400.v1.1
prunus_persica	Prupe.7G196500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0095371
rosa_laevigata	RLG00000016559
rosa_multiflora	Rmu_sc0041866.1_g000004 Rmu_ssc0000183.1_g000038
rosa_roxburghii	Rroxscaffold_2G00146430
rosa_rugosa	Rorug02G0050100
rosa_samantha	Rh2AG098300 Rh2BG099500 Rh2CG101500 Rh2DG099100
rosa_wichuraiana	Rw2G007420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	798
AccI	GTMKAC	1 cut(s)	189
AciI	CCGC	2 cut(s)	233, 1181
AclWI	GGATC	5 cut(s)	537, 550, 1076, 1089, 1140
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	3 cut(s)	617, 791, 1124
AcuI	CTGAAG	3 cut(s)	564, 905, 915
AfaI	GTAC	2 cut(s)	10, 17
AflII	CTTAAG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	532
AgsI	TTSAA	5 cut(s)	185, 373, 418, 575, 708
AhlI	ACTAGT	1 cut(s)	1006
AjnI	CCWGG	1 cut(s)	862
Alw21I	GWGCWC	1 cut(s)	954
Alw26I	GTCTC	5 cut(s)	220, 354, 596, 695, 754
Alw44I	GTGCAC	1 cut(s)	950
AlwI	GGATC	5 cut(s)	537, 550, 1076, 1089, 1140
Ama87I	CYCGRG	1 cut(s)	1076
AoxI	GGCC	1 cut(s)	351
ApaLI	GTGCAC	1 cut(s)	950
ApeKI	GCWGC	3 cut(s)	26, 670, 673
ApoI	RAATTY	3 cut(s)	617, 791, 1124
Asp700I	GAANNNNTTC	2 cut(s)	128, 1163
AspS9I	GGNCC	1 cut(s)	869
AsuC2I	CCSGG	1 cut(s)	991
AsuHPI	GGTGA	4 cut(s)	192, 439, 470, 1051
AvaI	CYCGRG	1 cut(s)	1076
AvaII	GGWCC	1 cut(s)	869
AxyI	CCTNAGG	1 cut(s)	803
BaeGI	GKGCMC	1 cut(s)	954
BamHI	GGATCC	2 cut(s)	542, 1081
BanI	GGYRCC	1 cut(s)	798
Bbv12I	GWGCWC	1 cut(s)	954
BbvI	GCAGC	3 cut(s)	38, 660, 682
BccI	CCATC	8 cut(s)	244, 287, 383, 449, 578, 890, 929, 1049
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	864
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	991
BcoDI	GTCTC	5 cut(s)	220, 354, 596, 695, 754
BcuI	ACTAGT	1 cut(s)	1006
BfaI	CTAG	4 cut(s)	357, 887, 998, 1007
BfrI	CTTAAG	1 cut(s)	494
BglII	AGATCT	1 cut(s)	843
BisI	GCNGC	4 cut(s)	27, 671, 674, 1181
BlsI	GCNGC	4 cut(s)	28, 672, 675, 1182
Bme1390I	CCNGG	2 cut(s)	864, 991
Bme18I	GGWCC	1 cut(s)	869
BmeT110I	CYCGRG	1 cut(s)	1076
BmgT120I	GGNCC	1 cut(s)	869
BmiI	GGNNCC	3 cut(s)	544, 800, 1083
BmrFI	CCNGG	2 cut(s)	864, 991
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
BpmI	CTGGAG	3 cut(s)	876, 943, 962
BpuEI	CTTGAG	3 cut(s)	662, 671, 737
BpuMI	CCSGG	1 cut(s)	991
BsaBI	GATNNNNATC	3 cut(s)	459, 480, 636
BsaWI	WCCGGW	1 cut(s)	871
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bse1I	ACTGG	2 cut(s)	212, 225
Bse21I	CCTNAGG	1 cut(s)	803
Bse8I	GATNNNNATC	3 cut(s)	459, 480, 636
BseBI	CCWGG	1 cut(s)	864
BseGI	GGATG	3 cut(s)	84, 649, 986
BseJI	GATNNNNATC	3 cut(s)	459, 480, 636
BseNI	ACTGG	2 cut(s)	212, 225
BseSI	GKGCMC	1 cut(s)	954
BseXI	GCAGC	3 cut(s)	38, 660, 682
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	798
BsiHKAI	GWGCWC	1 cut(s)	954
BsiHKCI	CYCGRG	1 cut(s)	1076
BsiSI	CCGG	2 cut(s)	872, 990
BsmAI	GTCTC	5 cut(s)	220, 354, 596, 695, 754
BsmBI	CGTCTC	1 cut(s)	354
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	1076
Bsp1286I	GDGCHC	1 cut(s)	954
Bsp143I	GATC	7 cut(s)	460, 481, 542, 757, 843, 1081, 1132
BspACI	CCGC	2 cut(s)	233, 1181
BspANI	GGCC	1 cut(s)	353
BspLI	GGNNCC	3 cut(s)	544, 800, 1083
BspPI	GGATC	5 cut(s)	537, 550, 1076, 1089, 1140
BspT107I	GGYRCC	1 cut(s)	798
BspTI	CTTAAG	1 cut(s)	494
BsrI	ACTGG	2 cut(s)	212, 225
BssMI	GATC	7 cut(s)	460, 481, 542, 757, 843, 1081, 1132
Bst2UI	CCWGG	1 cut(s)	864
Bst4CI	ACNGT	3 cut(s)	365, 520, 1036
Bst6I	CTCTTC	1 cut(s)	821
BstAFI	CTTAAG	1 cut(s)	494
BstC8I	GCNNGC	4 cut(s)	31, 171, 610, 1154
BstDEI	CTNAG	2 cut(s)	157, 803
BstF5I	GGATG	3 cut(s)	84, 649, 986
BstKTI	GATC	7 cut(s)	463, 484, 545, 760, 846, 1084, 1135
BstMAI	GTCTC	5 cut(s)	220, 354, 596, 695, 754
BstMBI	GATC	7 cut(s)	460, 481, 542, 757, 843, 1081, 1132
BstNI	CCWGG	1 cut(s)	864
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	862, 989
BstSLI	GKGCMC	1 cut(s)	954
BstV1I	GCAGC	3 cut(s)	38, 660, 682
BstX2I	RGATCY	3 cut(s)	542, 843, 1081
BstYI	RGATCY	3 cut(s)	542, 843, 1081
Bsu36I	CCTNAGG	1 cut(s)	803
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	3 cut(s)	84, 649, 986
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	4 cut(s)	31, 171, 610, 1154
Cfr13I	GGNCC	1 cut(s)	869
Csp6I	GTAC	2 cut(s)	9, 16
CviAII	CATG	4 cut(s)	49, 141, 629, 786
CviQI	GTAC	2 cut(s)	9, 16
DdeI	CTNAG	2 cut(s)	157, 803
DpnI	GATC	7 cut(s)	462, 483, 544, 759, 845, 1083, 1134
DpnII	GATC	7 cut(s)	460, 481, 542, 757, 843, 1081, 1132
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	821
EarI	CTCTTC	1 cut(s)	821
EciI	GGCGGA	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	869
Eco57I	CTGAAG	3 cut(s)	564, 905, 915
Eco81I	CCTNAGG	1 cut(s)	803
Eco88I	CYCGRG	1 cut(s)	1076
EcoRII	CCWGG	1 cut(s)	862
EcoT22I	ATGCAT	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	4 cut(s)	52, 144, 632, 789
FatI	CATG	4 cut(s)	48, 140, 628, 785
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	27, 671, 674, 1181
FokI	GGATG	3 cut(s)	71, 656, 973
Fsp4HI	GCNGC	4 cut(s)	27, 671, 674, 1181
FspBI	CTAG	4 cut(s)	357, 887, 998, 1007
GluI	GCNGC	4 cut(s)	27, 671, 674, 1181
GsuI	CTGGAG	3 cut(s)	876, 943, 962
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	2 cut(s)	872, 990
Hin1II	CATG	4 cut(s)	52, 144, 632, 789
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	2 cut(s)	589, 624
HpaII	CCGG	2 cut(s)	872, 990
HphI	GGTGA	4 cut(s)	192, 439, 470, 1051
Hpy166II	GTNNAC	5 cut(s)	9, 190, 869, 927, 952
Hpy188I	TCNGA	6 cut(s)	123, 290, 306, 583, 934, 1086
Hpy188III	TCNNGA	6 cut(s)	641, 761, 893, 907, 960, 1069
Hpy8I	GTNNAC	5 cut(s)	9, 190, 869, 927, 952
HpyAV	CCTTC	3 cut(s)	329, 699, 869
HpyCH4III	ACNGT	3 cut(s)	365, 520, 1036
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	9 cut(s)	52, 173, 560, 608, 746, 817, 952, 1156, 1193
HpyF3I	CTNAG	2 cut(s)	157, 803
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	4 cut(s)	52, 144, 632, 789
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	7 cut(s)	460, 481, 542, 757, 843, 1081, 1132
LmnI	GCTCC	4 cut(s)	895, 962, 1049, 1149
Lsp1109I	GCAGC	3 cut(s)	38, 660, 682
MaeI	CTAG	4 cut(s)	357, 887, 998, 1007
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	3 cut(s)	499, 514, 1108
MalI	GATC	7 cut(s)	462, 483, 544, 759, 845, 1083, 1134
MboI	GATC	7 cut(s)	460, 481, 542, 757, 843, 1081, 1132
MboII	GAAGA	8 cut(s)	100, 231, 234, 237, 326, 421, 838, 838
MflI	RGATCY	3 cut(s)	542, 843, 1081
MhlI	GDGCHC	1 cut(s)	954
MluCI	AATT	5 cut(s)	438, 617, 708, 791, 1124
MlyI	GAGTC	2 cut(s)	598, 618
Mph1103I	ATGCAT	1 cut(s)	54
MroXI	GAANNNNTTC	2 cut(s)	128, 1163
MseI	TTAA	3 cut(s)	282, 495, 537
MslI	CAYNNNNRTG	3 cut(s)	89, 387, 537
MspA1I	CMGCKG	3 cut(s)	29, 673, 1183
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	2 cut(s)	872, 990
MspR9I	CCNGG	2 cut(s)	864, 991
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	864
NciI	CCSGG	1 cut(s)	991
NdeII	GATC	7 cut(s)	460, 481, 542, 757, 843, 1081, 1132
NlaIII	CATG	4 cut(s)	52, 144, 632, 789
NlaIV	GGNNCC	3 cut(s)	544, 800, 1083
NmuCI	GTSAC	2 cut(s)	514, 1108
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	1076
PctI	GAATGC	1 cut(s)	173
PdmI	GAANNNNTTC	2 cut(s)	128, 1163
PfoI	TCCNGGA	1 cut(s)	989
PkrI	GCNGC	4 cut(s)	28, 672, 675, 1182
PleI	GAGTC	2 cut(s)	597, 618
PpsI	GAGTC	2 cut(s)	597, 618
Psp6I	CCWGG	1 cut(s)	862
PspGI	CCWGG	1 cut(s)	862
PspN4I	GGNNCC	3 cut(s)	544, 800, 1083
PspPI	GGNCC	1 cut(s)	869
PspXI	VCTCGAGB	1 cut(s)	1076
PsuI	RGATCY	3 cut(s)	542, 843, 1081
PvuII	CAGCTG	2 cut(s)	29, 673
RsaI	GTAC	2 cut(s)	10, 17
RsaNI	GTAC	2 cut(s)	9, 16
RseI	CAYNNNNRTG	3 cut(s)	89, 387, 537
SaqAI	TTAA	3 cut(s)	282, 495, 537
SatI	GCNGC	4 cut(s)	27, 671, 674, 1181
Sau3AI	GATC	7 cut(s)	460, 481, 542, 757, 843, 1081, 1132
Sau96I	GGNCC	1 cut(s)	869
SchI	GAGTC	2 cut(s)	598, 618
ScrFI	CCNGG	2 cut(s)	864, 991
SduI	GDGCHC	1 cut(s)	954
Sfr274I	CTCGAG	1 cut(s)	1076
SinI	GGWCC	1 cut(s)	869
SlaI	CTCGAG	1 cut(s)	1076
SmiMI	CAYNNNNRTG	3 cut(s)	89, 387, 537
SmlI	CTYRAG	5 cut(s)	494, 650, 677, 716, 1076
SmoI	CTYRAG	5 cut(s)	494, 650, 677, 716, 1076
SpeI	ACTAGT	1 cut(s)	1006
Sse9I	AATT	5 cut(s)	438, 617, 708, 791, 1124
SsiI	CCGC	2 cut(s)	233, 1181
SspMI	CTAG	4 cut(s)	357, 887, 998, 1007
StyD4I	CCNGG	2 cut(s)	862, 989
TaaI	ACNGT	3 cut(s)	365, 520, 1036
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	1 cut(s)	1077
TasI	AATT	5 cut(s)	438, 617, 708, 791, 1124
TauI	GCSGC	1 cut(s)	1183
Tru1I	TTAA	3 cut(s)	282, 495, 537
Tru9I	TTAA	3 cut(s)	282, 495, 537
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	2 cut(s)	514, 1108
TseI	GCWGC	3 cut(s)	26, 670, 673
Tsp45I	GTSAC	2 cut(s)	514, 1108
TspDTI	ATGAA	5 cut(s)	51, 89, 681, 838, 1156
TspGWI	ACGGA	1 cut(s)	854
TspRI	CASTG	1 cut(s)	225
Vha464I	CTTAAG	1 cut(s)	494
VneI	GTGCAC	1 cut(s)	950
VpaK11BI	GGWCC	1 cut(s)	869
XapI	RAATTY	3 cut(s)	617, 791, 1124
XceI	RCATGY	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	1076
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	2 cut(s)	128, 1163
XspI	CTAG	4 cut(s)	357, 887, 998, 1007
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.