Rorug02G0050100

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016236
Physical Location & Seq
Forward (+)
3868570 .. 3869436
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0050100.1

Sequence Viewer

Length: 867 bp
ATGAAGGGCACATCCAAAGTGATAATGGGGGCAACGCTGGTAATGGTGGTGAGCCTTGCCATAGTCTTGGGCTTAATCTTGGTTCTCCTAGCTGAGCTATACTGTTCACTCTTGCTCCGCCGCAGGCGTCAGCACAAAACCGACAGAAACAACTCCATCGTCAACACCGACCTGTCCACCACCGCCGCCTCCGCCACCGAAGCAGCCACCACCACCACCTCTGCCGAGCCCTCATTACAACCCCAAGGCCCTCCTCTAGGCAGCTTTTTAGGCGTTCTTCGAGCTCCGAGAAGCTTCCTCTTCCCATCATGCAAAGAAGAGTACAATGCAGAACCAAAGAAGCAACAACACTGTCACCTCCACCACGTTCTCGACATCCCAAACCAAGAAATATCAAACGAATCACCATCTATTTCCTTAGCAAATTCACCACAGCCAGCGCAACGAGACCCAGTTCAAGCTGGTACTACTCCAAACACTGCCGCTGCTGCCGGAGAAGATCATTTGGTATACATTTCCAATCCGATATACGACAACGAAGCAAACAGAGCTAGCAGCAGCACTACTACAGAAGCAAACACTCCCTTTGAAACTCCGGACACATCGCCTTCAAGACTTGAAATGGGGGGCTCTACTTCTAGCTCCGGTGAAGATAACGATGAGGTTGCACAACCAACTCCATCCGGTTCTGGACCTTCAAGCCCAACCACACCTCCTCTAACTCCAATGAAGAAGCTACCCAAAGAGGCATGCTCTGTTTCTCTCAGAGACGCAAGGTCTCTAGGAACTTCAGGTAGTGATTCCAACACTAACAATGGTAACTCATCCTCATCCTCAGGTTCTCCTTGTACTTCTCCTTCATGGTGA

Protein Analysis

288

Amino Acids

30.23

Weight (kDa)

5.53

Isoelectric Point (pI)

61.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08910
malus_domestica MD02G1094500.v1.1 MD15G1219400.v1.1
prunus_persica Prupe.7G196500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0095371
rosa_laevigata RLG00000016559
rosa_multiflora Rmu_sc0041866.1_g000004 Rmu_ssc0000183.1_g000038
rosa_roxburghii Rroxscaffold_2G00146430
rosa_rugosa Rorug02G0050100
rosa_samantha Rh2AG098300 Rh2BG099500 Rh2CG101500 Rh2DG099100
rosa_wichuraiana Rw2G007420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 510
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 6 cut(s) 118, 121, 183, 186, 192, 483
AcsI RAATTY 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 774
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 3 cut(s) 323, 466, 850
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 5 cut(s) 458, 590, 612, 620, 699
AhdI GACNNNNNGTC 1 cut(s) 775
AluBI AGCT 9 cut(s) 92, 97, 264, 284, 294, 461, 551, 642, 736
AluI AGCT 9 cut(s) 92, 97, 264, 284, 294, 461, 551, 642, 736
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 3 cut(s) 441, 762, 783
Aor13HI TCCGGA 1 cut(s) 595
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 6 cut(s) 203, 261, 485, 488, 555, 558
ApoI RAATTY 1 cut(s) 424
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 2 cut(s) 248, 692
AsuHPI GGTGA 5 cut(s) 61, 347, 396, 420, 659
AsuNHI GCTAGC 1 cut(s) 551
AvaII GGWCC 1 cut(s) 692
AxyI CCTNAGG 1 cut(s) 835
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 3 cut(s) 231, 286, 632
BarI GAAGNNNNNNTAC 1 cut(s) 841
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 6 cut(s) 215, 273, 472, 475, 567, 570
BccI CCATC 4 cut(s) 164, 313, 415, 688
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BcoDI GTCTC 3 cut(s) 441, 762, 783
BfaI CTAG 5 cut(s) 89, 257, 552, 639, 782
BfmI CTRYAG 1 cut(s) 567
BisI GCNGC 9 cut(s) 121, 186, 204, 262, 483, 486, 489, 556, 559
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 9 cut(s) 122, 187, 205, 263, 484, 487, 490, 557, 560
Bme18I GGWCC 1 cut(s) 692
BmeRI GACNNNNNGTC 1 cut(s) 775
BmgT120I GGNCC 2 cut(s) 248, 692
BmrI ACTGGG 1 cut(s) 446
BmtI GCTAGC 1 cut(s) 555
BmuI ACTGGG 1 cut(s) 446
BplI GAGNNNNNCTC 2 cut(s) 737, 769
Bpu10I CCTNAGC 1 cut(s) 418
Bpu1102I GCTNAGC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 2 cut(s) 441, 783
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 3 cut(s) 595, 644, 683
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 697, 727
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 452
Bse21I CCTNAGG 1 cut(s) 835
BseAI TCCGGA 1 cut(s) 595
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 5 cut(s) 11, 375, 680, 824, 830
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 3 cut(s) 84, 778, 849
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 2 cut(s) 243, 705
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 6 cut(s) 215, 273, 472, 475, 567, 570
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 4 cut(s) 492, 596, 645, 684
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 3 cut(s) 441, 762, 783
BsmBI CGTCTC 1 cut(s) 762
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 2 cut(s) 441, 783
Bsp1286I GDGCHC 4 cut(s) 11, 231, 286, 632
Bsp13I TCCGGA 1 cut(s) 595
Bsp143I GATC 1 cut(s) 499
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 6 cut(s) 118, 121, 183, 186, 192, 483
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 3 cut(s) 85, 777, 848
BspEI TCCGGA 1 cut(s) 595
BspOI GCTAGC 1 cut(s) 555
BspTNI GGTCTC 2 cut(s) 441, 783
BsrI ACTGG 1 cut(s) 452
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 499
BssNAI GTATAC 1 cut(s) 511
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 511
Bst4CI ACNGT 2 cut(s) 104, 353
Bst6I CTCTTC 2 cut(s) 305, 312
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 4 cut(s) 125, 438, 553, 751
BstDEI CTNAG 4 cut(s) 93, 418, 764, 835
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 5 cut(s) 11, 375, 680, 824, 830
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 1 cut(s) 502
BstMAI GTCTC 3 cut(s) 441, 762, 783
BstMBI GATC 1 cut(s) 499
BstMWI GCNNNNNNNGC 5 cut(s) 191, 200, 270, 488, 548
BstNSI RCATGY 1 cut(s) 753
BstSFI CTRYAG 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 6 cut(s) 215, 273, 472, 475, 567, 570
BstXI CCANNNNNNTGG 1 cut(s) 67
BstZ17I GTATAC 1 cut(s) 511
Bsu36I CCTNAGG 1 cut(s) 835
BsuRI GGCC 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 588
BtsCI GGATG 5 cut(s) 11, 375, 680, 824, 830
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 349, 477
Cac8I GCNNGC 4 cut(s) 125, 438, 553, 751
CfoI GCGC 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 248, 692
CseI GACGC 2 cut(s) 116, 779
Csp6I GTAC 3 cut(s) 322, 465, 849
CviAII CATG 3 cut(s) 309, 750, 861
CviQI GTAC 3 cut(s) 322, 465, 849
DdeI CTNAG 4 cut(s) 93, 418, 764, 835
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
DriI GACNNNNNGTC 1 cut(s) 775
Eam1104I CTCTTC 2 cut(s) 305, 312
Eam1105I GACNNNNNGTC 1 cut(s) 775
EarI CTCTTC 2 cut(s) 305, 312
EciI GGCGGA 2 cut(s) 107, 181
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 3 cut(s) 231, 286, 632
Eco31I GGTCTC 2 cut(s) 441, 783
Eco47I GGWCC 1 cut(s) 692
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 774
Eco81I CCTNAGG 1 cut(s) 835
EcoICRI GAGCTC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 3 cut(s) 231, 286, 632
ErhI CCWWGG 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 762
FaeI CATG 3 cut(s) 312, 753, 864
FaiI YATR 7 cut(s) 62, 100, 310, 511, 529, 751, 862
FatI CATG 3 cut(s) 308, 749, 860
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 9 cut(s) 121, 186, 204, 262, 483, 486, 489, 556, 559
FokI GGATG 4 cut(s) 362, 667, 811, 817
FriOI GRGCYC 3 cut(s) 231, 286, 632
Fsp4HI GCNGC 9 cut(s) 121, 186, 204, 262, 483, 486, 489, 556, 559
FspBI CTAG 5 cut(s) 89, 257, 552, 639, 782
GlaI GCGC 1 cut(s) 441
GluI GCNGC 9 cut(s) 121, 186, 204, 262, 483, 486, 489, 556, 559
HaeIII GGCC 1 cut(s) 249
HapII CCGG 4 cut(s) 492, 596, 645, 684
HgaI GACGC 2 cut(s) 116, 779
HhaI GCGC 1 cut(s) 442
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 3 cut(s) 312, 753, 864
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 2 cut(s) 401, 800
HpaII CCGG 4 cut(s) 492, 596, 645, 684
HphI GGTGA 5 cut(s) 61, 347, 396, 420, 659
Hpy166II GTNNAC 4 cut(s) 107, 163, 177, 511
Hpy188I TCNGA 3 cut(s) 288, 525, 767
Hpy188III TCNNGA 4 cut(s) 371, 596, 612, 690
Hpy8I GTNNAC 4 cut(s) 107, 163, 177, 511
HpyAV CCTTC 3 cut(s) 618, 705, 867
HpyCH4III ACNGT 2 cut(s) 104, 353
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 312, 329, 668
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 200, 270, 488, 548
HpyF3I CTNAG 4 cut(s) 93, 418, 764, 835
HpySE526I ACGT 1 cut(s) 366
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 3 cut(s) 312, 753, 864
HspAI GCGC 1 cut(s) 440
Kpn2I TCCGGA 1 cut(s) 595
Kzo9I GATC 1 cut(s) 499
LmnI GCTCC 3 cut(s) 120, 289, 647
Lsp1109I GCAGC 6 cut(s) 215, 273, 472, 475, 567, 570
MaeI CTAG 5 cut(s) 89, 257, 552, 639, 782
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 2 cut(s) 353, 818
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MboII GAAGA 6 cut(s) 269, 292, 329, 509, 662, 742
MhlI GDGCHC 4 cut(s) 11, 231, 286, 632
MluCI AATT 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 828
MroI TCCGGA 1 cut(s) 595
MseI TTAA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 4 cut(s) 492, 596, 645, 684
MwoI GCNNNNNNNGC 5 cut(s) 191, 200, 270, 488, 548
NdeII GATC 1 cut(s) 499
NheI GCTAGC 1 cut(s) 551
NlaIII CATG 3 cut(s) 312, 753, 864
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 353
NspI RCATGY 1 cut(s) 753
PaeI GCATGC 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 2 cut(s) 401, 800
PkrI GCNGC 9 cut(s) 122, 187, 205, 263, 484, 487, 490, 557, 560
Psp124BI GAGCTC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 248, 692
RsaI GTAC 3 cut(s) 323, 466, 850
RsaNI GTAC 3 cut(s) 322, 465, 849
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 9 cut(s) 121, 186, 204, 262, 483, 486, 489, 556, 559
Sau3AI GATC 1 cut(s) 499
Sau96I GGNCC 2 cut(s) 248, 692
SduI GDGCHC 4 cut(s) 11, 231, 286, 632
SfcI CTRYAG 1 cut(s) 567
SinI GGWCC 1 cut(s) 692
SphI GCATGC 1 cut(s) 753
Sse9I AATT 1 cut(s) 424
SsiI CCGC 6 cut(s) 118, 121, 183, 186, 192, 483
SspMI CTAG 5 cut(s) 89, 257, 552, 639, 782
SstI GAGCTC 1 cut(s) 286
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 104, 353
TaiI ACGT 1 cut(s) 369
TaqI TCGA 2 cut(s) 280, 372
TasI AATT 1 cut(s) 424
TatI WGTACW 2 cut(s) 321, 848
TauI GCSGC 3 cut(s) 123, 188, 485
TfiI GAWTC 2 cut(s) 401, 800
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 2 cut(s) 356, 484
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 6 cut(s) 203, 261, 485, 488, 555, 558
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 3 cut(s) 17, 743, 849
TspRI CASTG 2 cut(s) 356, 484
VpaK11BI GGWCC 1 cut(s) 692
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 1 cut(s) 424
XceI RCATGY 1 cut(s) 753
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 5 cut(s) 89, 257, 552, 639, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.