Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016236

Physical Location & Seq

Genomic Coordinates Forward (+)

8342114 .. 8345890

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG098300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTCTGAAACATTTGCTAACCTCATGTTCAGGCTTTGTTTTAGCTTGTTTGCTTGCATTCACAGTTCAAGTCTTCTTGTTCTCACCAATATCCCCAGTCTCACTTGAACTGCCTCCACCATCTTCTTCTCCACTTCCTCAAAACAACATATTACAGAGAGTGATTAAGCTTGGAGATGGAGTACTTCTGAAACCAGAAGATATTGCTTTGGATAAAGAAGGCACACTCTACACGGCCACTAGAGATGGTTGGATCAAAAGGCTTCACAGAAATGGGTCCTGGGAGGATTGGAAGATGTTGAATAGTCATGATACACTTCTTGGAATTACTATCACAAACGAAGGTGATCTTCTTGCATGTGATGTTGATCAGGGTCTGCTCAAGGTTACTGAAAATGGTGTCACGGTTCTTGCTTCACACGTTAATGGGTCCAAAATAAGATTTGCAGATGATGTGATTGAAGCGTCAGATGGGAGTCTATACTTTAGTGTTGCAAGCACCAAATTTGGACTCCATAATTGGTATCTGGATGTACTTGAGGCAAAACCACATGGGCAGCTGCTCAAGTACGACCCTTCATCAAATGAGACTTCAATTTTACTCGAGGGTTTGGGTTTTGCTAATGGGGTTGCAGTTTCAGAAGACCAGGATTATCTGGTGGTCTGCGAAACATGGAAGTGCCTAAGGTATTGGCTTAAGGGAGATAAGAGAGGGCAGACGGAGATCTTCATTGAGAACCTTCCCGGTGCACCGGACAACATCAATCTTGCTCCGGATGGGTCTTTCTGGATTGCTGTACTTAAGTTGACTTCAGACGGGCTGGAGTTTGTGCACAGCTCCAGAGCAGCAAAACACTTGATAGCAACATCTGGGAAATTAGTAGAACTAGTCAGTGGATTACATAAGAAAGCTACGGTGGTGAATGTGGGAGCTGATGGTAAGATAATCAAGAAGCTCGAGGATCCTAATGGAAGTGTGATGTCGTTTGTGACATCGGCTGTGGAATTTGACAATCATCTTTACTTGGGGAGCTTGCAGAACAACTTCATTGGCAAGTTGCCACTGAATGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004064 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0009986 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

359

Amino Acids

39.14

Weight (kDa)

5.47

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	47 - 89	4.2e-09	Strictosidine synthase-like, N-terminal
SGL	PF08450	107 - 268	2.6e-08	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	155 - 235	9.6e-23	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08910
malus_domestica	MD02G1094500.v1.1 MD15G1219400.v1.1
prunus_persica	Prupe.7G196500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0095371
rosa_laevigata	RLG00000016559
rosa_multiflora	Rmu_sc0041866.1_g000004 Rmu_ssc0000183.1_g000038
rosa_roxburghii	Rroxscaffold_2G00146430
rosa_rugosa	Rorug02G0050100
rosa_samantha	Rh2AG098300 Rh2BG099500 Rh2CG101500 Rh2DG099100
rosa_wichuraiana	Rw2G007420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	775
AclWI	GGATC	3 cut(s)	263, 959, 972
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	506, 1007
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	4 cut(s)	186, 537, 572, 801
AflII	CTTAAG	2 cut(s)	698, 803
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	5 cut(s)	71, 110, 304, 464, 597
AhlI	ACTAGT	1 cut(s)	889
AjnI	CCWGG	2 cut(s)	281, 648
AluBI	AGCT	8 cut(s)	47, 172, 562, 840, 914, 935, 958, 1035
AluI	AGCT	8 cut(s)	47, 172, 562, 840, 914, 935, 958, 1035
Alw21I	GWGCWC	2 cut(s)	754, 837
Alw26I	GTCTC	2 cut(s)	106, 584
Alw44I	GTGCAC	2 cut(s)	750, 833
AlwI	GGATC	3 cut(s)	263, 959, 972
AlwNI	CAGNNNCTG	1 cut(s)	379
Ama87I	CYCGRG	2 cut(s)	605, 959
Aor13HI	TCCGGA	1 cut(s)	775
AoxI	GGCC	1 cut(s)	237
ApaLI	GTGCAC	2 cut(s)	750, 833
ApeKI	GCWGC	3 cut(s)	559, 562, 848
ApoI	RAATTY	2 cut(s)	506, 1007
Asp700I	GAANNNNTTC	1 cut(s)	1046
AspS9I	GGNCC	2 cut(s)	279, 432
AsuC2I	CCSGG	1 cut(s)	747
AsuHPI	GGTGA	3 cut(s)	78, 359, 934
AvaI	CYCGRG	2 cut(s)	605, 959
AvaII	GGWCC	2 cut(s)	279, 432
AxyI	CCTNAGG	1 cut(s)	686
BaeGI	GKGCMC	2 cut(s)	754, 837
BamHI	GGATCC	1 cut(s)	964
BbsI	GAAGAC	2 cut(s)	67, 651
Bbv12I	GWGCWC	2 cut(s)	754, 837
BbvI	GCAGC	3 cut(s)	549, 571, 860
BccI	CCATC	6 cut(s)	130, 173, 242, 467, 773, 932
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	2 cut(s)	283, 650
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	747
BcoDI	GTCTC	2 cut(s)	106, 584
BcuI	ACTAGT	1 cut(s)	889
BfaI	CTAG	2 cut(s)	243, 890
BfrI	CTTAAG	2 cut(s)	698, 803
BglII	AGATCT	1 cut(s)	726
BisI	GCNGC	3 cut(s)	560, 563, 849
BlsI	GCNGC	3 cut(s)	561, 564, 850
BmcAI	AGTACT	1 cut(s)	186
Bme1390I	CCNGG	3 cut(s)	283, 650, 747
Bme18I	GGWCC	2 cut(s)	279, 432
BmeT110I	CYCGRG	2 cut(s)	605, 959
BmgT120I	GGNCC	2 cut(s)	279, 432
BmiI	GGNNCC	3 cut(s)	280, 433, 966
BmrFI	CCNGG	3 cut(s)	283, 650, 747
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	2 cut(s)	67, 651
BpmI	CTGGAG	2 cut(s)	826, 845
BpuEI	CTTGAG	3 cut(s)	368, 551, 560
BpuMI	CCSGG	1 cut(s)	747
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	2 cut(s)	754, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bse1I	ACTGG	1 cut(s)	98
Bse21I	CCTNAGG	1 cut(s)	686
Bse8I	GATNNNNATC	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	775
BseBI	CCWGG	2 cut(s)	283, 650
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	538, 784
BseJI	GATNNNNATC	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	98
BseSI	GKGCMC	2 cut(s)	754, 837
BseXI	GCAGC	3 cut(s)	549, 571, 860
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	2 cut(s)	754, 837
BsiHKCI	CYCGRG	2 cut(s)	605, 959
BsiSI	CCGG	3 cut(s)	747, 755, 776
BsmAI	GTCTC	2 cut(s)	106, 584
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	2 cut(s)	605, 959
Bsp1286I	GDGCHC	2 cut(s)	754, 837
Bsp13I	TCCGGA	1 cut(s)	775
Bsp143I	GATC	5 cut(s)	255, 349, 370, 726, 964
BspANI	GGCC	1 cut(s)	239
BspEI	TCCGGA	1 cut(s)	775
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	280, 433, 966
BspPI	GGATC	3 cut(s)	263, 959, 972
BspTI	CTTAAG	2 cut(s)	698, 803
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	5 cut(s)	255, 349, 370, 726, 964
Bst2UI	CCWGG	2 cut(s)	283, 650
Bst4CI	ACNGT	3 cut(s)	67, 409, 919
BstAFI	CTTAAG	2 cut(s)	698, 803
BstC8I	GCNNGC	3 cut(s)	57, 499, 1037
BstDEI	CTNAG	1 cut(s)	686
BstF5I	GGATG	2 cut(s)	538, 784
BstKTI	GATC	5 cut(s)	258, 352, 373, 729, 967
BstMAI	GTCTC	2 cut(s)	106, 584
BstMBI	GATC	5 cut(s)	255, 349, 370, 726, 964
BstNI	CCWGG	2 cut(s)	283, 650
BstNSI	RCATGY	1 cut(s)	363
BstSCI	CCNGG	3 cut(s)	281, 648, 745
BstSLI	GKGCMC	2 cut(s)	754, 837
BstV1I	GCAGC	3 cut(s)	549, 571, 860
BstV2I	GAAGAC	2 cut(s)	67, 651
BstX2I	RGATCY	2 cut(s)	726, 964
BstYI	RGATCY	2 cut(s)	726, 964
Bsu36I	CCTNAGG	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	538, 784
BtsIMutI	CAGTG	2 cut(s)	901, 1064
Cac8I	GCNNGC	3 cut(s)	57, 499, 1037
CaiI	CAGNNNCTG	1 cut(s)	379
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	279, 432
CseI	GACGC	1 cut(s)	456
Csp6I	GTAC	4 cut(s)	185, 536, 571, 800
CviAII	CATG	5 cut(s)	27, 311, 360, 554, 675
CviQI	GTAC	4 cut(s)	185, 536, 571, 800
DdeI	CTNAG	1 cut(s)	686
DpnI	GATC	5 cut(s)	257, 351, 372, 728, 966
DpnII	GATC	5 cut(s)	255, 349, 370, 726, 964
EaeI	YGGCCR	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	279, 432
Eco57I	CTGAAG	1 cut(s)	798
Eco81I	CCTNAGG	1 cut(s)	686
Eco88I	CYCGRG	2 cut(s)	605, 959
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	281, 648
FaeI	CATG	5 cut(s)	30, 314, 363, 557, 678
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	5 cut(s)	26, 310, 359, 553, 674
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	560, 563, 849
FokI	GGATG	2 cut(s)	545, 791
Fsp4HI	GCNGC	3 cut(s)	560, 563, 849
FspBI	CTAG	2 cut(s)	243, 890
GluI	GCNGC	3 cut(s)	560, 563, 849
GsuI	CTGGAG	2 cut(s)	826, 845
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	3 cut(s)	747, 755, 776
HgaI	GACGC	1 cut(s)	456
Hin1II	CATG	5 cut(s)	30, 314, 363, 557, 678
HincII	GTYRAC	1 cut(s)	810
HindII	GTYRAC	1 cut(s)	810
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	2 cut(s)	478, 513
HpaII	CCGG	3 cut(s)	747, 755, 776
HphI	GGTGA	3 cut(s)	78, 359, 934
Hpy166II	GTNNAC	3 cut(s)	752, 810, 835
Hpy188I	TCNGA	5 cut(s)	9, 192, 472, 643, 817
Hpy188III	TCNNGA	6 cut(s)	311, 530, 776, 790, 843, 952
Hpy8I	GTNNAC	3 cut(s)	752, 810, 835
HpyAV	CCTTC	4 cut(s)	215, 338, 588, 752
HpyCH4III	ACNGT	3 cut(s)	67, 409, 919
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	9 cut(s)	59, 359, 449, 497, 635, 752, 835, 1039, 1076
HpyF3I	CTNAG	1 cut(s)	686
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	5 cut(s)	30, 314, 363, 557, 678
Kpn2I	TCCGGA	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	255, 349, 370, 726, 964
LmnI	GCTCC	4 cut(s)	778, 845, 932, 1032
Lsp1109I	GCAGC	3 cut(s)	549, 571, 860
MaeI	CTAG	2 cut(s)	243, 890
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	388, 403, 991
MalI	GATC	5 cut(s)	257, 351, 372, 728, 966
MboI	GATC	5 cut(s)	255, 349, 370, 726, 964
MboII	GAAGA	8 cut(s)	67, 117, 120, 212, 307, 344, 656, 721
MflI	RGATCY	2 cut(s)	726, 964
MhlI	GDGCHC	2 cut(s)	754, 837
MluCI	AATT	6 cut(s)	327, 506, 520, 597, 878, 1007
MlyI	GAGTC	2 cut(s)	487, 507
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	8 cut(s)	34, 126, 150, 280, 535, 601, 707, 955
MroI	TCCGGA	1 cut(s)	775
MroXI	GAANNNNTTC	1 cut(s)	1046
MseI	TTAA	4 cut(s)	168, 426, 699, 804
MslI	CAYNNNNRTG	3 cut(s)	273, 426, 679
MspA1I	CMGCKG	1 cut(s)	562
MspCI	CTTAAG	2 cut(s)	698, 803
MspI	CCGG	3 cut(s)	747, 755, 776
MspR9I	CCNGG	3 cut(s)	283, 650, 747
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	2 cut(s)	283, 650
NciI	CCSGG	1 cut(s)	747
NdeII	GATC	5 cut(s)	255, 349, 370, 726, 964
NlaIII	CATG	5 cut(s)	30, 314, 363, 557, 678
NlaIV	GGNNCC	3 cut(s)	280, 433, 966
NmuCI	GTSAC	2 cut(s)	403, 991
NspI	RCATGY	1 cut(s)	363
PaeR7I	CTCGAG	2 cut(s)	605, 959
PagI	TCATGA	1 cut(s)	310
PctI	GAATGC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	1046
PkrI	GCNGC	3 cut(s)	561, 564, 850
PleI	GAGTC	2 cut(s)	486, 507
PpsI	GAGTC	2 cut(s)	486, 507
PpuMI	RGGWCCY	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	281, 648
PspGI	CCWGG	2 cut(s)	281, 648
PspN4I	GGNNCC	3 cut(s)	280, 433, 966
PspPI	GGNCC	2 cut(s)	279, 432
PspPPI	RGGWCCY	1 cut(s)	279
PspXI	VCTCGAGB	2 cut(s)	605, 959
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	726, 964
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	4 cut(s)	186, 537, 572, 801
RsaNI	GTAC	4 cut(s)	185, 536, 571, 800
RseI	CAYNNNNRTG	3 cut(s)	273, 426, 679
SaqAI	TTAA	4 cut(s)	168, 426, 699, 804
SatI	GCNGC	3 cut(s)	560, 563, 849
Sau3AI	GATC	5 cut(s)	255, 349, 370, 726, 964
Sau96I	GGNCC	2 cut(s)	279, 432
ScaI	AGTACT	1 cut(s)	186
SchI	GAGTC	2 cut(s)	487, 507
ScrFI	CCNGG	3 cut(s)	283, 650, 747
SduI	GDGCHC	2 cut(s)	754, 837
Sfr274I	CTCGAG	2 cut(s)	605, 959
SinI	GGWCC	2 cut(s)	279, 432
SlaI	CTCGAG	2 cut(s)	605, 959
SmiMI	CAYNNNNRTG	3 cut(s)	273, 426, 679
SmlI	CTYRAG	7 cut(s)	383, 539, 566, 605, 698, 803, 959
SmoI	CTYRAG	7 cut(s)	383, 539, 566, 605, 698, 803, 959
SpeI	ACTAGT	1 cut(s)	889
Sse9I	AATT	6 cut(s)	327, 506, 520, 597, 878, 1007
SspMI	CTAG	2 cut(s)	243, 890
StyD4I	CCNGG	3 cut(s)	281, 648, 745
TaaI	ACNGT	3 cut(s)	67, 409, 919
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	606, 960
TasI	AATT	6 cut(s)	327, 506, 520, 597, 878, 1007
TatI	WGTACW	3 cut(s)	184, 535, 799
Tru1I	TTAA	4 cut(s)	168, 426, 699, 804
Tru9I	TTAA	4 cut(s)	168, 426, 699, 804
TscAI	CASTG	2 cut(s)	901, 1071
TseFI	GTSAC	2 cut(s)	403, 991
TseI	GCWGC	3 cut(s)	559, 562, 848
Tsp45I	GTSAC	2 cut(s)	403, 991
TspDTI	ATGAA	3 cut(s)	570, 721, 1039
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	2 cut(s)	901, 1071
Vha464I	CTTAAG	2 cut(s)	698, 803
VneI	GTGCAC	2 cut(s)	750, 833
VpaK11BI	GGWCC	2 cut(s)	279, 432
XapI	RAATTY	2 cut(s)	506, 1007
XceI	RCATGY	1 cut(s)	363
XhoI	CTCGAG	2 cut(s)	605, 959
XmnI	GAANNNNTTC	1 cut(s)	1046
XspI	CTAG	2 cut(s)	243, 890
ZrmI	AGTACT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.