Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016236

Physical Location & Seq

Genomic Coordinates Reverse (-)

18561152 .. 18565101

Gene Structure 3950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G196500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTCTCAGGCATTTGCTAACCTCATTTGTTCTGGCATGTTTGCTTGCATTCACTCTTCAAATCTACTTCTCCTCCCCAATATCCCCAGTCTCACTTCACCTGCCTCCACCATCTTCTTCTTCCCATCTTCCTAAAAACAACATATTGCAGAAAGTGATCAAACTTGGGGATGGGGTACTTCTGAAACCAGAAGATGTTGATGTGGACAAAGAAGGGACAATATATACAGCTACAAGAGATGGTTGGATCAAAAGGCTTCACAAAAATGGTAACTGGGAGAATTGGAAAAGGGTGAACAGTGATACAGTACTTGGGATCACAATCACCAAGGAAGGTGATGTTGTTGCATGTGATACTGAAGAGGGTTTGCTTAAAATTACTGAAAATGGTGTCAAGCTTCTCACTTCACATGTTAATGGGTCCAAAATAAGATTTGCAGATGATGTGATTGAGGCATCAGATGGCAGTCTATATTTTAGTGTTGCAAGCACCAAATTTGGACTCCATGATTGGTATCTAGATGTGCTAGAGGCAAAACCACATGGGCAGCTGCTCAAGTACGATCCATCATCAGGGGAGACTTCAATCCTACTTGATAACTTGGGTTTTGCTAATGGAGTTGCAGTGTCCAAACACCAAGATTATCTGGTGGTCTGTGAAACATGGAAATTTAGGTGCCAAAGGCATTGGCTGAAGGGAGAGAACAAAGGGAAGACAGAGATCTTCATTGAGAACCTTCCTGGTGGACCTGACAACATCAATCTTGCCCCAGATGGATCTTTCTGGATCGCTCTACTTCAGTTGACTACAGAGGGGCTGGAGTTTGTCCACGCCTCCAAAGCAGCCAAACACTTGATAGCATCATCTCGGAAATTGACTGAACTAGTCAGTGGCTTGCGCACAAAAGCCATGGTGGTGAATGTGGCAGCTAATGGTAAGATTGTGAAGAAGCTTGAGGATCCAGATGGAAGCGTGATGTCGTTTGTGACAAATGCTTTGGAATTTGAGGATCATCTTTACTTGGGAAGCCTGCACACCAATTTCATTGGCAAGTTGCCACTTAAAGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004064 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0009986 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

359

Amino Acids

39.46

Weight (kDa)

6.36

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08910
malus_domestica	MD02G1094500.v1.1 MD15G1219400.v1.1
prunus_persica	Prupe.7G196500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0095371
rosa_laevigata	RLG00000016559
rosa_multiflora	Rmu_sc0041866.1_g000004 Rmu_ssc0000183.1_g000038
rosa_roxburghii	Rroxscaffold_2G00146430
rosa_rugosa	Rorug02G0050100
rosa_samantha	Rh2AG098300 Rh2BG099500 Rh2CG101500 Rh2DG099100
rosa_wichuraiana	Rw2G007420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	111
Acc16I	TGCGCA	1 cut(s)	902
Acc36I	ACCTGC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	678
AclWI	GGATC	8 cut(s)	257, 326, 560, 787, 797, 956, 969, 1020
AcsI	RAATTY	3 cut(s)	497, 671, 1004
AcuI	CTGAAG	3 cut(s)	381, 716, 785
AfaI	GTAC	3 cut(s)	180, 312, 563
AfiI	CCNNNNNNNGG	1 cut(s)	575
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	2 cut(s)	62, 588
AhlI	ACTAGT	1 cut(s)	886
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	5 cut(s)	233, 400, 553, 932, 955
AluI	AGCT	5 cut(s)	233, 400, 553, 932, 955
Alw26I	GTCTC	2 cut(s)	97, 575
AlwI	GGATC	8 cut(s)	257, 326, 560, 787, 797, 956, 969, 1020
ApeKI	GCWGC	4 cut(s)	550, 553, 845, 929
ApoI	RAATTY	3 cut(s)	497, 671, 1004
ArsI	GACNNNNNNTTYG	2 cut(s)	982, 1014
AspLEI	GCGC	1 cut(s)	903
AspS9I	GGNCC	2 cut(s)	423, 749
AsuHPI	GGTGA	5 cut(s)	92, 307, 319, 350, 931
AvaII	GGWCC	2 cut(s)	423, 749
BamHI	GGATCC	1 cut(s)	961
BanI	GGYRCC	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	722
BbvI	GCAGC	4 cut(s)	540, 562, 857, 941
BccI	CCATC	8 cut(s)	121, 135, 167, 236, 458, 577, 770, 962
BciT130I	CCWGG	1 cut(s)	744
BclI	TGATCA	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	97, 575
BcuI	ACTAGT	1 cut(s)	886
BfaI	CTAG	3 cut(s)	521, 530, 887
BfmI	CTRYAG	1 cut(s)	810
BfuAI	ACCTGC	1 cut(s)	111
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	4 cut(s)	551, 554, 846, 930
BlsI	GCNGC	4 cut(s)	552, 555, 847, 931
BmcAI	AGTACT	1 cut(s)	312
Bme1390I	CCNGG	1 cut(s)	744
Bme18I	GGWCC	2 cut(s)	423, 749
BmgT120I	GGNCC	2 cut(s)	423, 749
BmiI	GGNNCC	3 cut(s)	424, 680, 963
BmrFI	CCNGG	1 cut(s)	744
BmrI	ACTGGG	2 cut(s)	83, 286
BmsI	GCATC	3 cut(s)	467, 872, 1060
BmuI	ACTGGG	2 cut(s)	83, 286
BpiI	GAAGAC	1 cut(s)	722
BpmI	CTGGAG	1 cut(s)	842
BpuEI	CTTGAG	2 cut(s)	542, 977
BsaBI	GATNNNNATC	2 cut(s)	323, 516
BsaJI	CCNNGG	2 cut(s)	330, 912
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 612, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse1I	ACTGG	2 cut(s)	89, 281
Bse8I	GATNNNNATC	2 cut(s)	323, 516
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	2 cut(s)	330, 912
BseGI	GGATG	1 cut(s)	178
BseJI	GATNNNNATC	2 cut(s)	323, 516
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	2 cut(s)	89, 281
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	4 cut(s)	540, 562, 857, 941
BsgI	GTGCAG	1 cut(s)	1019
BshNI	GGYRCC	1 cut(s)	678
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	2 cut(s)	97, 575
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	50
Bsp143I	GATC	9 cut(s)	159, 249, 318, 565, 723, 779, 789, 961, 1012
Bsp19I	CCATGG	1 cut(s)	912
BspCNI	CTCAG	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	424, 680, 963
BspMI	ACCTGC	1 cut(s)	111
BspPI	GGATC	8 cut(s)	257, 326, 560, 787, 797, 956, 969, 1020
BspT107I	GGYRCC	1 cut(s)	678
BsrI	ACTGG	2 cut(s)	89, 281
BssECI	CCNNGG	2 cut(s)	330, 912
BssMI	GATC	9 cut(s)	159, 249, 318, 565, 723, 779, 789, 961, 1012
BssT1I	CCWWGG	2 cut(s)	330, 912
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	2 cut(s)	302, 310
Bst6I	CTCTTC	2 cut(s)	63, 357
BstC8I	GCNNGC	4 cut(s)	48, 490, 899, 1034
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	912
BstF5I	GGATG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	903
BstKTI	GATC	9 cut(s)	162, 252, 321, 568, 726, 782, 792, 964, 1015
BstMAI	GTCTC	2 cut(s)	97, 575
BstMBI	GATC	9 cut(s)	159, 249, 318, 565, 723, 779, 789, 961, 1012
BstMWI	GCNNNNNNNGC	1 cut(s)	842
BstNI	CCWGG	1 cut(s)	744
BstNSI	RCATGY	3 cut(s)	42, 354, 416
BstSCI	CCNGG	1 cut(s)	742
BstSFI	CTRYAG	1 cut(s)	810
BstV1I	GCAGC	4 cut(s)	540, 562, 857, 941
BstV2I	GAAGAC	1 cut(s)	722
BstX2I	RGATCY	3 cut(s)	723, 779, 961
BstYI	RGATCY	3 cut(s)	723, 779, 961
BtgI	CCRYGG	1 cut(s)	912
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	3 cut(s)	307, 633, 898
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	4 cut(s)	48, 490, 899, 1034
CfoI	GCGC	1 cut(s)	903
Cfr13I	GGNCC	2 cut(s)	423, 749
Csp6I	GTAC	3 cut(s)	179, 311, 562
CviAII	CATG	7 cut(s)	39, 351, 413, 509, 545, 666, 913
CviQI	GTAC	3 cut(s)	179, 311, 562
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	9 cut(s)	161, 251, 320, 567, 725, 781, 791, 963, 1014
DpnII	GATC	9 cut(s)	159, 249, 318, 565, 723, 779, 789, 961, 1012
Eam1104I	CTCTTC	2 cut(s)	63, 357
EarI	CTCTTC	2 cut(s)	63, 357
Eco130I	CCWWGG	2 cut(s)	330, 912
Eco47I	GGWCC	2 cut(s)	423, 749
Eco57I	CTGAAG	3 cut(s)	381, 716, 785
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	2 cut(s)	330, 912
EcoT22I	ATGCAT	1 cut(s)	1075
ErhI	CCWWGG	2 cut(s)	330, 912
FaeI	CATG	7 cut(s)	42, 354, 416, 512, 548, 669, 916
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	7 cut(s)	38, 350, 412, 508, 544, 665, 912
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	551, 554, 846, 930
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	4 cut(s)	551, 554, 846, 930
FspBI	CTAG	3 cut(s)	521, 530, 887
FspI	TGCGCA	1 cut(s)	902
GlaI	GCGC	1 cut(s)	902
GluI	GCNGC	4 cut(s)	551, 554, 846, 930
GsuI	CTGGAG	1 cut(s)	842
HhaI	GCGC	1 cut(s)	903
Hin1II	CATG	7 cut(s)	42, 354, 416, 512, 548, 669, 916
Hin6I	GCGC	1 cut(s)	901
HinP1I	GCGC	1 cut(s)	901
HincII	GTYRAC	1 cut(s)	807
HindII	GTYRAC	1 cut(s)	807
HindIII	AAGCTT	2 cut(s)	398, 953
HinfI	GANTC	1 cut(s)	504
HphI	GGTGA	5 cut(s)	92, 307, 319, 350, 931
Hpy166II	GTNNAC	5 cut(s)	208, 298, 749, 807, 832
Hpy188I	TCNGA	3 cut(s)	186, 463, 873
Hpy188III	TCNNGA	3 cut(s)	521, 787, 965
Hpy8I	GTNNAC	5 cut(s)	208, 298, 749, 807, 832
HpyAV	CCTTC	4 cut(s)	209, 329, 691, 749
HpyCH4III	ACNGT	2 cut(s)	302, 310
HpyCH4V	TGCA	8 cut(s)	50, 151, 350, 440, 488, 626, 1036, 1073
HpyF10VI	GCNNNNNNNGC	1 cut(s)	842
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	7 cut(s)	42, 354, 416, 512, 548, 669, 916
HspAI	GCGC	1 cut(s)	901
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	9 cut(s)	159, 249, 318, 565, 723, 779, 789, 961, 1012
Lsp1109I	GCAGC	4 cut(s)	540, 562, 857, 941
LweI	GCATC	3 cut(s)	467, 872, 1060
MaeI	CTAG	3 cut(s)	521, 530, 887
MaeIII	GTNAC	2 cut(s)	272, 988
MalI	GATC	9 cut(s)	161, 251, 320, 567, 725, 781, 791, 963, 1014
MboI	GATC	9 cut(s)	159, 249, 318, 565, 723, 779, 789, 961, 1012
MflI	RGATCY	3 cut(s)	723, 779, 961
MluCI	AATT	7 cut(s)	283, 378, 497, 671, 875, 1004, 1042
MlyI	GAGTC	1 cut(s)	498
MmeI	TCCRAC	1 cut(s)	227
Mph1103I	ATGCAT	1 cut(s)	1075
MseI	TTAA	3 cut(s)	375, 417, 1065
MslI	CAYNNNNRTG	3 cut(s)	267, 417, 917
MspA1I	CMGCKG	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	1 cut(s)	842
NcoI	CCATGG	1 cut(s)	912
NdeII	GATC	9 cut(s)	159, 249, 318, 565, 723, 779, 789, 961, 1012
NlaIII	CATG	7 cut(s)	42, 354, 416, 512, 548, 669, 916
NlaIV	GGNNCC	3 cut(s)	424, 680, 963
NmuCI	GTSAC	1 cut(s)	988
NsbI	TGCGCA	1 cut(s)	902
NsiI	ATGCAT	1 cut(s)	1075
NspI	RCATGY	3 cut(s)	42, 354, 416
PaqCI	CACCTGC	1 cut(s)	111
PciI	ACATGT	1 cut(s)	412
PctI	GAATGC	1 cut(s)	50
PkrI	GCNGC	4 cut(s)	552, 555, 847, 931
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PscI	ACATGT	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	3 cut(s)	424, 680, 963
PspPI	GGNCC	2 cut(s)	423, 749
PsuI	RGATCY	3 cut(s)	723, 779, 961
PvuII	CAGCTG	1 cut(s)	553
RsaI	GTAC	3 cut(s)	180, 312, 563
RsaNI	GTAC	3 cut(s)	179, 311, 562
RseI	CAYNNNNRTG	3 cut(s)	267, 417, 917
SaqAI	TTAA	3 cut(s)	375, 417, 1065
SatI	GCNGC	4 cut(s)	551, 554, 846, 930
Sau3AI	GATC	9 cut(s)	159, 249, 318, 565, 723, 779, 789, 961, 1012
Sau96I	GGNCC	2 cut(s)	423, 749
ScaI	AGTACT	1 cut(s)	312
SchI	GAGTC	1 cut(s)	498
ScrFI	CCNGG	1 cut(s)	744
SfaNI	GCATC	3 cut(s)	467, 872, 1060
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	2 cut(s)	423, 749
SmiMI	CAYNNNNRTG	3 cut(s)	267, 417, 917
SmlI	CTYRAG	2 cut(s)	557, 956
SmoI	CTYRAG	2 cut(s)	557, 956
SpeI	ACTAGT	1 cut(s)	886
Sse9I	AATT	7 cut(s)	283, 378, 497, 671, 875, 1004, 1042
SspMI	CTAG	3 cut(s)	521, 530, 887
StyD4I	CCNGG	1 cut(s)	742
StyI	CCWWGG	2 cut(s)	330, 912
TaaI	ACNGT	2 cut(s)	302, 310
TasI	AATT	7 cut(s)	283, 378, 497, 671, 875, 1004, 1042
TatI	WGTACW	1 cut(s)	310
Tru1I	TTAA	3 cut(s)	375, 417, 1065
Tru9I	TTAA	3 cut(s)	375, 417, 1065
TscAI	CASTG	3 cut(s)	307, 633, 898
TseFI	GTSAC	1 cut(s)	988
TseI	GCWGC	4 cut(s)	550, 553, 845, 929
Tsp45I	GTSAC	1 cut(s)	988
TspDTI	ATGAA	2 cut(s)	718, 1036
TspRI	CASTG	3 cut(s)	307, 633, 898
VpaK11BI	GGWCC	2 cut(s)	423, 749
XapI	RAATTY	3 cut(s)	497, 671, 1004
XbaI	TCTAGA	1 cut(s)	520
XceI	RCATGY	3 cut(s)	42, 354, 416
XspI	CTAG	3 cut(s)	521, 530, 887
ZrmI	AGTACT	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.