RLG00000016559

Adipocyte plasma membrane-associated

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
7653345 .. 7657595
4251 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016559

Sequence Viewer

Length: 1515 bp
ATGAACCAAATAATCCACTGCGTCATCGGCTTCAAAAACCCAATAGACATCGACTCCATCAAATCCCAAGTCAAGTCCTCCCTCATGCTCACCCACCCAAGATTCTCTAGCCTCATGATGCGTGACTCCCATAGCAGAGAACGCTGGCACAGAACCACCCAAATCGACCCCGACCGCCACATCATCGTCCTTCACCACCCCGTCTCCTCTGGCGTTGACGACGAGACCGCCGTCAACAACTACTTGGTCGACCTCTCCACCGACTCAGGGCTCTCTACCGACAAACCCATGTGGGAGTTTCATCTTCTGATTGCTCACAATGTTGGGATTTTCCGAATCCATCATGCTTTAGGAGATGGGATATTGCTTATGTCGATGTTTTTGGCGAGTTGCTGGAGAGTCAGAGACAAGGAGAAGTTCCCGAATTTGGCATCGAGCACGAGTAAAGGTGTGGATAAGAAAAAGGGCTTTGTTTTAGCTTGTTTGCTTGCATTCACAGTTCAAGTCTACTTGTTCTCATCAATATCCCCAGTCTCACTTGAACTGCCTCCACCATCTTCTTCTCCACTTCCTCAAAACAACATATTACAGAGAGTGATTAAGCTTGGAGATGGAGTACTTCTGAAACCAGAAGATATTGCTTTGGATAAAGAAGGCACACTCTACACGGCCACTAGAGATGGTTGGATCAAAAGGCTTCACAGAAATGGGTCCTGGGAGGATTGGAAGATGTTGAATAGTCATACACTTCTTGGAATTACTATCACAAACGAAGGTGATCTTGTTGCATGTGATGTTGATCAGGGTCTGCTTAAGGTTACTGAAAATGGTGTCACGGTTCTTGCTTCACACGTCAATGGGTCCAAAATAAGGTTTGCAGATGATGTGATTGAAGCTTCAGATGGGAGTCTATACTTTAGTGTTGCAAGCACCAAATTTGGACTCCATAATTGGTATCTGGATGTGCTTGAGGCAAAACCACATGGGCAGCTGCTCAAGTATGACCCTTCATCAAATGAGACCTCAATTTTACTTGAGAGTTTGGGTTTTGCTAATGGGGTTGCAGTTTCAGAAGACCAGGATTATCTAGTGGTCTGCGAAACATGGAAATTCAGGTGCCTAAGGCATTGGCTTAAGGGAGAGAATAGAGGGCAGACGGAGATCTTCATTGAGAACCTTCCCGGTGCACCAGACAACATCAATCTTGCTCCGGATGGGTCTTTCTGGATTGCTCTACTTAAGTTGACTTCAGACGGGCTGGAGTTTGTGCACAGCTCCAGAGCAGCAAAACACTTGATAGCAACATCTGGGAAATTAGTAGAACTAGTCAGTGGGATACATAAGAAAGCTACGGTGGTGAATGTGGGAGCTGATGGCAAGATAATCAAGAAGCTCGAGGATCCTAATGGAAGTGTGATGGCGTTTGTGACATCGGCTGTGGAATTTGACAATCATCTTTACTTGGGGAGCTTGCAGAACAACTTCATTGGCAAGTTGCCACTGAATGTTGCATAA

Protein Analysis

505

Amino Acids

55.8

Weight (kDa)

6.23

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 191 - 233 6.6e-09 Strictosidine synthase-like, N-terminal
SGL PF08450 248 - 413 2.9e-09 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 298 - 381 1.2e-23 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016236)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1116
AccI GTMKAC 2 cut(s) 249, 507
AccIII TCCGGA 1 cut(s) 1210
AciI CCGC 2 cut(s) 175, 228
AclWI GGATC 3 cut(s) 695, 1394, 1407
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 4 cut(s) 424, 935, 1109, 1442
AcuI CTGAAG 2 cut(s) 882, 1233
AfaI GTAC 1 cut(s) 618
AfiI CCNNNNNNNGG 3 cut(s) 267, 427, 870
AflII CTTAAG 3 cut(s) 812, 1133, 1238
AflIII ACRYGT 1 cut(s) 850
AgsI TTSAA 5 cut(s) 34, 503, 542, 736, 893
AhlI ACTAGT 1 cut(s) 1324
AjiI CACGTC 1 cut(s) 853
AjnI CCWGG 2 cut(s) 713, 1077
AluBI AGCT 9 cut(s) 479, 604, 896, 991, 1275, 1349, 1370, 1393, 1470
AluI AGCT 9 cut(s) 479, 604, 896, 991, 1275, 1349, 1370, 1393, 1470
Alw21I GWGCWC 3 cut(s) 440, 1189, 1272
Alw26I GTCTC 5 cut(s) 208, 218, 399, 538, 1013
Alw44I GTGCAC 2 cut(s) 1185, 1268
AlwI GGATC 3 cut(s) 695, 1394, 1407
AlwNI CAGNNNCTG 1 cut(s) 808
Ama87I CYCGRG 1 cut(s) 1394
Aor13HI TCCGGA 1 cut(s) 1210
AoxI GGCC 1 cut(s) 669
ApaLI GTGCAC 2 cut(s) 1185, 1268
ApeKI GCWGC 3 cut(s) 988, 991, 1283
ApoI RAATTY 4 cut(s) 424, 935, 1109, 1442
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
Asp700I GAANNNNTTC 1 cut(s) 1481
AspS9I GGNCC 2 cut(s) 711, 861
AsuC2I CCSGG 1 cut(s) 1182
AsuHPI GGTGA 4 cut(s) 82, 185, 788, 1369
AvaI CYCGRG 1 cut(s) 1394
AvaII GGWCC 2 cut(s) 711, 861
AxyI CCTNAGG 1 cut(s) 1121
BaeGI GKGCMC 2 cut(s) 1189, 1272
BamHI GGATCC 1 cut(s) 1399
BanI GGYRCC 1 cut(s) 1116
BanII GRGCYC 1 cut(s) 273
BauI CACGAG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 1080
Bbv12I GWGCWC 3 cut(s) 440, 1189, 1272
BbvI GCAGC 3 cut(s) 978, 1000, 1295
BceAI ACGGC 2 cut(s) 215, 684
BciT130I CCWGG 2 cut(s) 715, 1079
BciVI GTATCC 1 cut(s) 1329
BclI TGATCA 1 cut(s) 799
BcnI CCSGG 1 cut(s) 1182
BcoDI GTCTC 5 cut(s) 208, 218, 399, 538, 1013
BcuI ACTAGT 1 cut(s) 1324
BfaI CTAG 4 cut(s) 108, 675, 1088, 1325
BfrI CTTAAG 3 cut(s) 812, 1133, 1238
BfuI GTATCC 1 cut(s) 1329
BglII AGATCT 1 cut(s) 1161
BisI GCNGC 3 cut(s) 989, 992, 1284
BlsI GCNGC 3 cut(s) 990, 993, 1285
BmcAI AGTACT 1 cut(s) 618
Bme1390I CCNGG 3 cut(s) 715, 1079, 1182
Bme18I GGWCC 2 cut(s) 711, 861
BmeT110I CYCGRG 1 cut(s) 1394
BmgBI CACGTC 1 cut(s) 853
BmgT120I GGNCC 2 cut(s) 711, 861
BmiI GGNNCC 4 cut(s) 712, 862, 1118, 1401
BmrFI CCNGG 3 cut(s) 715, 1079, 1182
BmrI ACTGGG 1 cut(s) 524
BmsI GCATC 2 cut(s) 108, 440
BmuI ACTGGG 1 cut(s) 524
BoxI GACNNNNGTC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 1080
BpmI CTGGAG 3 cut(s) 415, 1261, 1280
BpuEI CTTGAG 3 cut(s) 980, 989, 1055
BpuMI CCSGG 1 cut(s) 1182
BsaBI GATNNNNATC 1 cut(s) 798
BsaI GGTCTC 2 cut(s) 218, 1013
BsaJI CCNNGG 1 cut(s) 714
BsaWI WCCGGW 1 cut(s) 1210
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 188, 218, 600, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 427, 870
Bse1I ACTGG 1 cut(s) 530
Bse21I CCTNAGG 1 cut(s) 1121
Bse8I GATNNNNATC 1 cut(s) 798
BseAI TCCGGA 1 cut(s) 1210
BseBI CCWGG 2 cut(s) 715, 1079
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 2 cut(s) 967, 1219
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 3 cut(s) 267, 427, 870
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 530
BseRI GAGGAG 1 cut(s) 196
BseSI GKGCMC 2 cut(s) 1189, 1272
BseXI GCAGC 3 cut(s) 978, 1000, 1295
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 671
BshNI GGYRCC 1 cut(s) 1116
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 3 cut(s) 440, 1189, 1272
BsiHKCI CYCGRG 1 cut(s) 1394
BsiSI CCGG 2 cut(s) 1182, 1211
BslI CCNNNNNNNGG 3 cut(s) 267, 427, 870
BsmAI GTCTC 5 cut(s) 208, 218, 399, 538, 1013
BsmBI CGTCTC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 1 cut(s) 671
Bso31I GGTCTC 2 cut(s) 218, 1013
BsoBI CYCGRG 1 cut(s) 1394
Bsp1286I GDGCHC 4 cut(s) 273, 440, 1189, 1272
Bsp13I TCCGGA 1 cut(s) 1210
Bsp143I GATC 5 cut(s) 687, 778, 799, 1161, 1399
BspACI CCGC 2 cut(s) 175, 228
BspANI GGCC 1 cut(s) 671
BspCNI CTCAG 1 cut(s) 278
BspEI TCCGGA 1 cut(s) 1210
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 4 cut(s) 712, 862, 1118, 1401
BspPI GGATC 3 cut(s) 695, 1394, 1407
BspT107I GGYRCC 1 cut(s) 1116
BspTI CTTAAG 3 cut(s) 812, 1133, 1238
BspTNI GGTCTC 2 cut(s) 218, 1013
BsrI ACTGG 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 5 cut(s) 687, 778, 799, 1161, 1399
BssSI CACGAG 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 439
Bst2UI CCWGG 2 cut(s) 715, 1079
Bst4CI ACNGT 3 cut(s) 499, 838, 1354
BstAFI CTTAAG 3 cut(s) 812, 1133, 1238
BstC8I GCNNGC 4 cut(s) 146, 489, 928, 1472
BstDEI CTNAG 2 cut(s) 265, 1121
BstF5I GGATG 2 cut(s) 967, 1219
BstKTI GATC 5 cut(s) 690, 781, 802, 1164, 1402
BstMAI GTCTC 5 cut(s) 208, 218, 399, 538, 1013
BstMBI GATC 5 cut(s) 687, 778, 799, 1161, 1399
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 27, 141
BstNI CCWGG 2 cut(s) 715, 1079
BstNSI RCATGY 1 cut(s) 792
BstPAI GACNNNNGTC 1 cut(s) 230
BstSCI CCNGG 3 cut(s) 713, 1077, 1180
BstSLI GKGCMC 2 cut(s) 1189, 1272
BstV1I GCAGC 3 cut(s) 978, 1000, 1295
BstV2I GAAGAC 1 cut(s) 1080
BstX2I RGATCY 2 cut(s) 1161, 1399
BstYI RGATCY 2 cut(s) 1161, 1399
Bsu36I CCTNAGG 1 cut(s) 1121
BsuI GTATCC 1 cut(s) 1329
BsuRI GGCC 1 cut(s) 671
BtrI CACGTC 1 cut(s) 853
BtsCI GGATG 2 cut(s) 967, 1219
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 3 cut(s) 16, 1336, 1499
Cac8I GCNNGC 4 cut(s) 146, 489, 928, 1472
CaiI CAGNNNCTG 1 cut(s) 808
CciI TCATGA 1 cut(s) 114
Cfr13I GGNCC 2 cut(s) 711, 861
CseI GACGC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 617
CviAII CATG 7 cut(s) 85, 115, 289, 344, 789, 983, 1104
CviQI GTAC 1 cut(s) 617
DdeI CTNAG 2 cut(s) 265, 1121
DpnI GATC 5 cut(s) 689, 780, 801, 1163, 1401
DpnII GATC 5 cut(s) 687, 778, 799, 1161, 1399
EaeI YGGCCR 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 2 cut(s) 218, 1013
Eco47I GGWCC 2 cut(s) 711, 861
Eco57I CTGAAG 2 cut(s) 882, 1233
Eco81I CCTNAGG 1 cut(s) 1121
Eco88I CYCGRG 1 cut(s) 1394
EcoO109I RGGNCCY 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 713, 1077
EcoT38I GRGCYC 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 7 cut(s) 88, 118, 292, 347, 792, 986, 1107
FalI AAGNNNNNCTT 2 cut(s) 765, 797
FatI CATG 7 cut(s) 84, 114, 288, 343, 788, 982, 1103
FbaI TGATCA 1 cut(s) 799
FblI GTMKAC 2 cut(s) 249, 507
Fnu4HI GCNGC 3 cut(s) 989, 992, 1284
FokI GGATG 2 cut(s) 974, 1226
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 3 cut(s) 989, 992, 1284
FspBI CTAG 4 cut(s) 108, 675, 1088, 1325
GluI GCNGC 3 cut(s) 989, 992, 1284
GsuI CTGGAG 3 cut(s) 415, 1261, 1280
HaeIII GGCC 1 cut(s) 671
HapII CCGG 2 cut(s) 1182, 1211
HgaI GACGC 1 cut(s) 10
Hin1II CATG 7 cut(s) 88, 118, 292, 347, 792, 986, 1107
HincII GTYRAC 4 cut(s) 217, 235, 250, 1245
HindII GTYRAC 4 cut(s) 217, 235, 250, 1245
HindIII AAGCTT 2 cut(s) 602, 894
HinfI GANTC 8 cut(s) 53, 102, 125, 263, 336, 399, 907, 942
HpaII CCGG 2 cut(s) 1182, 1211
HphI GGTGA 4 cut(s) 82, 185, 788, 1369
Hpy166II GTNNAC 7 cut(s) 217, 235, 250, 508, 1187, 1245, 1270
Hpy188I TCNGA 7 cut(s) 309, 335, 404, 624, 901, 1072, 1252
Hpy188III TCNNGA 7 cut(s) 115, 421, 959, 1211, 1225, 1278, 1387
Hpy8I GTNNAC 7 cut(s) 217, 235, 250, 508, 1187, 1245, 1270
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 5 cut(s) 200, 647, 767, 1017, 1187
HpyCH4III ACNGT 3 cut(s) 499, 838, 1354
HpyCH4IV ACGT 1 cut(s) 852
HpyCH4V TGCA 9 cut(s) 491, 788, 878, 926, 1064, 1187, 1270, 1474, 1511
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 141
HpyF3I CTNAG 2 cut(s) 265, 1121
HpySE526I ACGT 1 cut(s) 852
Hsp92II CATG 7 cut(s) 88, 118, 292, 347, 792, 986, 1107
Kpn2I TCCGGA 1 cut(s) 1210
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 5 cut(s) 687, 778, 799, 1161, 1399
LmnI GCTCC 4 cut(s) 1213, 1280, 1367, 1467
Lsp1109I GCAGC 3 cut(s) 978, 1000, 1295
LweI GCATC 2 cut(s) 108, 440
MaeI CTAG 4 cut(s) 108, 675, 1088, 1325
MaeII ACGT 1 cut(s) 852
MaeIII GTNAC 4 cut(s) 122, 817, 832, 1426
MalI GATC 5 cut(s) 689, 780, 801, 1163, 1401
MboI GATC 5 cut(s) 687, 778, 799, 1161, 1399
MboII GAAGA 7 cut(s) 296, 549, 552, 644, 739, 1085, 1156
MflI RGATCY 2 cut(s) 1161, 1399
MhlI GDGCHC 4 cut(s) 273, 440, 1189, 1272
MluCI AATT 8 cut(s) 424, 756, 935, 949, 1026, 1109, 1313, 1442
MlyI GAGTC 6 cut(s) 47, 119, 257, 408, 916, 936
MmeI TCCRAC 1 cut(s) 665
MroI TCCGGA 1 cut(s) 1210
MroXI GAANNNNTTC 1 cut(s) 1481
MseI TTAA 4 cut(s) 600, 813, 1134, 1239
MslI CAYNNNNRTG 2 cut(s) 705, 855
MspA1I CMGCKG 1 cut(s) 991
MspCI CTTAAG 3 cut(s) 812, 1133, 1238
MspI CCGG 2 cut(s) 1182, 1211
MspR9I CCNGG 3 cut(s) 715, 1079, 1182
Mva1269I GAATGC 1 cut(s) 491
MvaI CCWGG 2 cut(s) 715, 1079
MwoI GCNNNNNNNGC 2 cut(s) 27, 141
NciI CCSGG 1 cut(s) 1182
NdeII GATC 5 cut(s) 687, 778, 799, 1161, 1399
NlaIII CATG 7 cut(s) 88, 118, 292, 347, 792, 986, 1107
NlaIV GGNNCC 4 cut(s) 712, 862, 1118, 1401
NmuCI GTSAC 3 cut(s) 122, 832, 1426
NspI RCATGY 1 cut(s) 792
PaeR7I CTCGAG 1 cut(s) 1394
PagI TCATGA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 491
PdmI GAANNNNTTC 1 cut(s) 1481
PfeI GAWTC 2 cut(s) 102, 336
PkrI GCNGC 3 cut(s) 990, 993, 1285
PleI GAGTC 6 cut(s) 47, 119, 257, 407, 915, 936
PpsI GAGTC 6 cut(s) 47, 119, 257, 407, 915, 936
PpuMI RGGWCCY 1 cut(s) 711
PshAI GACNNNNGTC 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 713, 1077
PspGI CCWGG 2 cut(s) 713, 1077
PspN4I GGNNCC 4 cut(s) 712, 862, 1118, 1401
PspPI GGNCC 2 cut(s) 711, 861
PspPPI RGGWCCY 1 cut(s) 711
PspXI VCTCGAGB 1 cut(s) 1394
PstNI CAGNNNCTG 1 cut(s) 808
PsuI RGATCY 2 cut(s) 1161, 1399
PvuII CAGCTG 1 cut(s) 991
RsaI GTAC 1 cut(s) 618
RsaNI GTAC 1 cut(s) 617
RseI CAYNNNNRTG 2 cut(s) 705, 855
SalI GTCGAC 1 cut(s) 248
SaqAI TTAA 4 cut(s) 600, 813, 1134, 1239
SatI GCNGC 3 cut(s) 989, 992, 1284
Sau3AI GATC 5 cut(s) 687, 778, 799, 1161, 1399
Sau96I GGNCC 2 cut(s) 711, 861
ScaI AGTACT 1 cut(s) 618
SchI GAGTC 6 cut(s) 47, 119, 257, 408, 916, 936
ScrFI CCNGG 3 cut(s) 715, 1079, 1182
SduI GDGCHC 4 cut(s) 273, 440, 1189, 1272
SfaNI GCATC 2 cut(s) 108, 440
Sfr274I CTCGAG 1 cut(s) 1394
SinI GGWCC 2 cut(s) 711, 861
SlaI CTCGAG 1 cut(s) 1394
SmiMI CAYNNNNRTG 2 cut(s) 705, 855
SmlI CTYRAG 7 cut(s) 812, 968, 995, 1034, 1133, 1238, 1394
SmoI CTYRAG 7 cut(s) 812, 968, 995, 1034, 1133, 1238, 1394
SpeI ACTAGT 1 cut(s) 1324
Sse9I AATT 8 cut(s) 424, 756, 935, 949, 1026, 1109, 1313, 1442
SsiI CCGC 2 cut(s) 175, 228
SspMI CTAG 4 cut(s) 108, 675, 1088, 1325
StyD4I CCNGG 3 cut(s) 713, 1077, 1180
TaaI ACNGT 3 cut(s) 499, 838, 1354
TaiI ACGT 1 cut(s) 855
TaqI TCGA 6 cut(s) 51, 165, 249, 374, 434, 1395
TasI AATT 8 cut(s) 424, 756, 935, 949, 1026, 1109, 1313, 1442
TatI WGTACW 1 cut(s) 616
TfiI GAWTC 2 cut(s) 102, 336
Tru1I TTAA 4 cut(s) 600, 813, 1134, 1239
Tru9I TTAA 4 cut(s) 600, 813, 1134, 1239
TscAI CASTG 3 cut(s) 23, 1336, 1506
TseFI GTSAC 3 cut(s) 122, 832, 1426
TseI GCWGC 3 cut(s) 988, 991, 1283
Tsp45I GTSAC 3 cut(s) 122, 832, 1426
TspDTI ATGAA 5 cut(s) 17, 290, 999, 1156, 1474
TspGWI ACGGA 1 cut(s) 1172
TspRI CASTG 3 cut(s) 23, 1336, 1506
Vha464I CTTAAG 3 cut(s) 812, 1133, 1238
VneI GTGCAC 2 cut(s) 1185, 1268
VpaK11BI GGWCC 2 cut(s) 711, 861
XapI RAATTY 4 cut(s) 424, 935, 1109, 1442
XceI RCATGY 1 cut(s) 792
XhoI CTCGAG 1 cut(s) 1394
XmiI GTMKAC 2 cut(s) 249, 507
XmnI GAANNNNTTC 1 cut(s) 1481
XspI CTAG 4 cut(s) 108, 675, 1088, 1325
ZrmI AGTACT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.