Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016236

Physical Location & Seq

Genomic Coordinates Forward (+)

17727656 .. 17728146

Gene Structure 491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1219400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATTGGTAACAAAAAACTGAAATCCTTAAAGAAGCTTGTGAAAGTGATTAAACTTGGGGATGGAGTGCTTCTGAAACCAGATATTGATGTGGATAAGGAAGGCACACTCTATACAGCTACAAGAGATGGTTGGATCATAAGGCTTCACACAAAAGGGAGTTGGGAAAACTGGAAGAAGGTGAATAGTGATACAGTTTTTGGAATTACATTCACAAAAGATGGTGATCTTGTTACATGTGATACTGATCAAGAGGTAAGAGCATCACATTCTGACCAGAAAATGGACAAATACTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004064 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0009986 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

101

Amino Acids

11.37

Weight (kDa)

8.99

Isoelectric Point (pI)

-0.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	28 - 49	8.2e-06	Strictosidine synthase-like, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08910
malus_domestica	MD02G1094500.v1.1 MD15G1219400.v1.1
prunus_persica	Prupe.7G196500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0095371
rosa_laevigata	RLG00000016559
rosa_multiflora	Rmu_sc0041866.1_g000004 Rmu_ssc0000183.1_g000038
rosa_roxburghii	Rroxscaffold_2G00146430
rosa_rugosa	Rorug02G0050100
rosa_samantha	Rh2AG098300 Rh2BG099500 Rh2CG101500 Rh2DG099100
rosa_wichuraiana	Rw2G007420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	283
AclWI	GGATC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	236
AluBI	AGCT	2 cut(s)	37, 119
AluI	AGCT	2 cut(s)	37, 119
AlwI	GGATC	1 cut(s)	143
ArsI	GACNNNNNNTTYG	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	193, 236
BccI	CCATC	3 cut(s)	56, 122, 215
BclI	TGATCA	1 cut(s)	247
BmsI	GCATC	1 cut(s)	272
BsaBI	GATNNNNATC	2 cut(s)	225, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	176
Bse8I	GATNNNNATC	2 cut(s)	225, 246
BseGI	GGATG	1 cut(s)	67
BseJI	GATNNNNATC	2 cut(s)	225, 246
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	135, 226, 247
BspPI	GGATC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	3 cut(s)	135, 226, 247
Bst4CI	ACNGT	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	3 cut(s)	138, 229, 250
BstMBI	GATC	3 cut(s)	135, 226, 247
BstNSI	RCATGY	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	67
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	3 cut(s)	37, 119, 145
CviKI_1	RGCY	3 cut(s)	37, 119, 145
DpnI	GATC	3 cut(s)	137, 228, 249
DpnII	GATC	3 cut(s)	135, 226, 247
FaeI	CATG	1 cut(s)	240
FaiI	YATR	3 cut(s)	114, 140, 238
FatI	CATG	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	247
FokI	GGATG	1 cut(s)	74
Hin1II	CATG	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	35
HphI	GGTGA	2 cut(s)	193, 236
Hpy188I	TCNGA	2 cut(s)	75, 274
Hpy188III	TCNNGA	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	95, 172
HpyCH4III	ACNGT	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	135, 226, 247
LpnPI	CCDG	3 cut(s)	93, 157, 290
LweI	GCATC	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	8, 232
MalI	GATC	3 cut(s)	137, 228, 249
MboI	GATC	3 cut(s)	135, 226, 247
MboII	GAAGA	1 cut(s)	187
MluCI	AATT	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	1 cut(s)	247
MseI	TTAA	2 cut(s)	29, 51
NdeII	GATC	3 cut(s)	135, 226, 247
NlaIII	CATG	1 cut(s)	240
NspI	RCATGY	1 cut(s)	240
PciI	ACATGT	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	283
PscI	ACATGT	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	29, 51
Sau3AI	GATC	3 cut(s)	135, 226, 247
SetI	ASST	4 cut(s)	39, 121, 183, 258
SfaNI	GCATC	1 cut(s)	272
SgeI	CNNG	9 cut(s)	50, 68, 92, 135, 184, 242, 249, 263, 289
Sse9I	AATT	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	196
TasI	AATT	1 cut(s)	204
Tru1I	TTAA	2 cut(s)	29, 51
Tru9I	TTAA	2 cut(s)	29, 51
Van91I	CCANNNNNTGG	1 cut(s)	283
XceI	RCATGY	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.