Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0016236

Physical Location & Seq

Genomic Coordinates Forward (+)

7493023 .. 7497282

Gene Structure 4260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1094500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTCTCAAACATTTGCTCACTCCATTTTCTGGCTTTCTGTTGGCATGTTTGGTTGCCTTCTCTCTCCAAATCTACTTCTCCCCAATATCTCCAGATGCACTTCACCTCCCTCCACCTTCCCACCTTCCCCAAAACAACATATTACAGAAAGTGATTAAACTTGGGGATGGTGTGCTTCTGGAACCGGAAGATGTTGATGTGGATAAGGATGGCACACTCTATACAGCAACCAGAGATGGTTGGATCAAAAGGCTTCACAAAAATGGGAGTTGGGAAAACTGGAAGAAGGTGAATACTGATACAGTTCTTGGAATCACATTCACAAAAGATGGTGATCTTGTTGCATGTGATACTGATCAGGGTTTGCTGAAGATTACTGAAGCTGGTGTGACTGTTCTCACTTCACATGTTAATGGGTCCAAAATAAGATTTGCAGATGATGTGATTGAGGGACCAGATGGTAGTCTATATTTTAGTGTTGCAAGCACCAAATTTGGTCTCCATGATTGGTATCTTGACATGCTAGAGGCAAAGCCCCATGGGCAGCTGCTCAAGTATGATCCATCATCCGGAGAGACTTCAATCCTACTTGATCACTTGGGATTTGCTAATGGTGTTGCAGTTTCAAAAGACCAAGATTATCTGGTGGTCTGTGAAACTTGGAAATTTAGGTGTTTAAGGTATTGGCTGGAGGGAAAGAACAAGGGGAAGACAGAGATCTTCGTTGAGAATCTTCCTGGTGGACCTGACAACATCAATCTTGCTCCAGATGGGTCTTTTTGGATTGCTCTACTTCAGTTGACTAGGGAAGGGTTTGAGTTTGTGCACACCTCCAAAGCAGCCAAGCACCTAGTAGCAGCGTCACGGAAACTGACTGAACTAGTGAGCGGAATGCGAACAGAAGCGATGGCGGTGAATGTGGCAGCTGACGGCAAGATTATCAAGAAACTTATGGATCCTGATGGAAGCGTAATATCCTTTGTGACGAATGCTTTGGAGTTTGAGGATCATCTTTACTTGGGAAGCCTGAATACTAACTTCATTGGCAAGCTACCACTGAAAGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004064 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0009986 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

358

Amino Acids

39.33

Weight (kDa)

5.56

Isoelectric Point (pI)

26.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	45 - 86	3.6e-09	Strictosidine synthase-like, N-terminal
SGL	PF08450	98 - 267	4.5e-12	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	153 - 233	1.1e-24	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08910
malus_domestica	MD02G1094500.v1.1 MD15G1219400.v1.1
prunus_persica	Prupe.7G196500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0095371
rosa_laevigata	RLG00000016559
rosa_multiflora	Rmu_sc0041866.1_g000004 Rmu_ssc0000183.1_g000038
rosa_roxburghii	Rroxscaffold_2G00146430
rosa_rugosa	Rorug02G0050100
rosa_samantha	Rh2AG098300 Rh2BG099500 Rh2CG101500 Rh2DG099100
rosa_wichuraiana	Rw2G007420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	891
AccIII	TCCGGA	1 cut(s)	572
AciI	CCGC	2 cut(s)	891, 914
AclWI	GGATC	5 cut(s)	254, 557, 953, 966, 1017
AcsI	RAATTY	2 cut(s)	494, 668
AcuI	CTGAAG	3 cut(s)	392, 402, 782
AfiI	CCNNNNNNNGG	2 cut(s)	32, 572
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	585, 630
AhlI	ACTAGT	1 cut(s)	883
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	4 cut(s)	386, 550, 929, 1054
AluI	AGCT	4 cut(s)	386, 550, 929, 1054
Alw21I	GWGCWC	1 cut(s)	831
Alw26I	GTCTC	2 cut(s)	506, 572
Alw44I	GTGCAC	1 cut(s)	827
AlwI	GGATC	5 cut(s)	254, 557, 953, 966, 1017
Aor13HI	TCCGGA	1 cut(s)	572
ApaLI	GTGCAC	1 cut(s)	827
ApeKI	GCWGC	5 cut(s)	547, 550, 842, 860, 926
ApoI	RAATTY	2 cut(s)	494, 668
ArsI	GACNNNNNNTTYG	2 cut(s)	979, 1011
AspS9I	GGNCC	3 cut(s)	420, 455, 746
AsuHPI	GGTGA	4 cut(s)	98, 304, 347, 928
AvaII	GGWCC	3 cut(s)	420, 455, 746
BaeGI	GKGCMC	1 cut(s)	831
BamHI	GGATCC	1 cut(s)	958
BarI	GAAGNNNNNNTAC	2 cut(s)	1018, 1050
BbsI	GAAGAC	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	831
BbvI	GCAGC	5 cut(s)	537, 559, 854, 872, 938
BccI	CCATC	9 cut(s)	164, 206, 233, 326, 455, 574, 767, 904, 959
BceAI	ACGGC	1 cut(s)	949
BciT130I	CCWGG	1 cut(s)	741
BclI	TGATCA	2 cut(s)	358, 595
BcoDI	GTCTC	2 cut(s)	506, 572
BcuI	ACTAGT	1 cut(s)	883
BfaI	CTAG	4 cut(s)	527, 807, 854, 884
BglI	GCCNNNNNGGC	1 cut(s)	544
BglII	AGATCT	1 cut(s)	720
BisI	GCNGC	5 cut(s)	548, 551, 843, 861, 927
BlsI	GCNGC	5 cut(s)	549, 552, 844, 862, 928
Bme1390I	CCNGG	1 cut(s)	741
Bme18I	GGWCC	3 cut(s)	420, 455, 746
BmgT120I	GGNCC	3 cut(s)	420, 455, 746
BmiI	GGNNCC	4 cut(s)	186, 421, 456, 960
BmrFI	CCNGG	1 cut(s)	741
BmsI	GCATC	2 cut(s)	88, 1057
BpiI	GAAGAC	1 cut(s)	719
BpmI	CTGGAG	3 cut(s)	78, 713, 753
BpuEI	CTTGAG	1 cut(s)	539
BsaBI	GATNNNNATC	3 cut(s)	336, 357, 513
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	541
BsaWI	WCCGGW	2 cut(s)	187, 572
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 572
Bse1I	ACTGG	1 cut(s)	287
Bse8I	GATNNNNATC	3 cut(s)	336, 357, 513
BseAI	TCCGGA	1 cut(s)	572
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	3 cut(s)	175, 217, 569
BseJI	GATNNNNATC	3 cut(s)	336, 357, 513
BseLI	CCNNNNNNNGG	2 cut(s)	32, 572
BseNI	ACTGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	831
BseXI	GCAGC	5 cut(s)	537, 559, 854, 872, 938
BsiHKAI	GWGCWC	1 cut(s)	831
BsiSI	CCGG	2 cut(s)	188, 573
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	32, 572
BsmAI	GTCTC	2 cut(s)	506, 572
BsmFI	GGGAC	1 cut(s)	468
BsmI	GAATGC	2 cut(s)	900, 997
Bso31I	GGTCTC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	831
Bsp13I	TCCGGA	1 cut(s)	572
Bsp143I	GATC	8 cut(s)	246, 337, 358, 562, 595, 720, 958, 1009
Bsp19I	CCATGG	1 cut(s)	541
BspACI	CCGC	2 cut(s)	891, 914
BspEI	TCCGGA	1 cut(s)	572
BspLI	GGNNCC	4 cut(s)	186, 421, 456, 960
BspPI	GGATC	5 cut(s)	254, 557, 953, 966, 1017
BspTNI	GGTCTC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	891
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	8 cut(s)	246, 337, 358, 562, 595, 720, 958, 1009
BssT1I	CCWWGG	1 cut(s)	541
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	2 cut(s)	307, 397
BstC8I	GCNNGC	2 cut(s)	487, 1052
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	3 cut(s)	175, 217, 569
BstKTI	GATC	8 cut(s)	249, 340, 361, 565, 598, 723, 961, 1012
BstMAI	GTCTC	2 cut(s)	506, 572
BstMBI	GATC	8 cut(s)	246, 337, 358, 562, 595, 720, 958, 1009
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	1 cut(s)	741
BstNSI	RCATGY	4 cut(s)	51, 351, 413, 526
BstSCI	CCNGG	1 cut(s)	739
BstSLI	GKGCMC	1 cut(s)	831
BstV1I	GCAGC	5 cut(s)	537, 559, 854, 872, 938
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	2 cut(s)	720, 958
BstYI	RGATCY	2 cut(s)	720, 958
BtgI	CCRYGG	1 cut(s)	541
BtgZI	GCGATG	1 cut(s)	923
BtsCI	GGATG	3 cut(s)	175, 217, 569
BtsIMutI	CAGTG	1 cut(s)	1058
Cac8I	GCNNGC	2 cut(s)	487, 1052
Cfr13I	GGNCC	3 cut(s)	420, 455, 746
CseI	GACGC	1 cut(s)	852
CviAII	CATG	6 cut(s)	48, 348, 410, 506, 523, 542
DpnI	GATC	8 cut(s)	248, 339, 360, 564, 597, 722, 960, 1011
DpnII	GATC	8 cut(s)	246, 337, 358, 562, 595, 720, 958, 1009
Eco130I	CCWWGG	1 cut(s)	541
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	3 cut(s)	420, 455, 746
Eco57I	CTGAAG	3 cut(s)	392, 402, 782
EcoRII	CCWGG	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	1072
ErhI	CCWWGG	1 cut(s)	541
FaeI	CATG	6 cut(s)	51, 351, 413, 509, 526, 545
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	6 cut(s)	47, 347, 409, 505, 522, 541
FbaI	TGATCA	2 cut(s)	358, 595
Fnu4HI	GCNGC	5 cut(s)	548, 551, 843, 861, 927
FokI	GGATG	3 cut(s)	182, 224, 556
Fsp4HI	GCNGC	5 cut(s)	548, 551, 843, 861, 927
FspBI	CTAG	4 cut(s)	527, 807, 854, 884
GluI	GCNGC	5 cut(s)	548, 551, 843, 861, 927
GsuI	CTGGAG	3 cut(s)	78, 713, 753
HapII	CCGG	2 cut(s)	188, 573
HgaI	GACGC	1 cut(s)	852
Hin1II	CATG	6 cut(s)	51, 351, 413, 509, 526, 545
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HinfI	GANTC	2 cut(s)	315, 733
HpaII	CCGG	2 cut(s)	188, 573
HphI	GGTGA	4 cut(s)	98, 304, 347, 928
Hpy166II	GTNNAC	3 cut(s)	746, 804, 829
Hpy188III	TCNNGA	7 cut(s)	95, 182, 518, 573, 770, 946, 962
Hpy8I	GTNNAC	3 cut(s)	746, 804, 829
HpyAV	CCTTC	5 cut(s)	70, 129, 137, 283, 806
HpyCH4III	ACNGT	2 cut(s)	307, 397
HpyCH4V	TGCA	7 cut(s)	101, 347, 437, 485, 623, 829, 1070
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
Hsp92II	CATG	6 cut(s)	51, 351, 413, 509, 526, 545
Kpn2I	TCCGGA	1 cut(s)	572
Ksp22I	TGATCA	2 cut(s)	358, 595
Kzo9I	GATC	8 cut(s)	246, 337, 358, 562, 595, 720, 958, 1009
LmnI	GCTCC	1 cut(s)	772
Lsp1109I	GCAGC	5 cut(s)	537, 559, 854, 872, 938
LweI	GCATC	2 cut(s)	88, 1057
MaeI	CTAG	4 cut(s)	527, 807, 854, 884
MaeIII	GTNAC	3 cut(s)	391, 864, 985
MalI	GATC	8 cut(s)	248, 339, 360, 564, 597, 722, 960, 1011
MbiI	CCGCTC	1 cut(s)	891
MboI	GATC	8 cut(s)	246, 337, 358, 562, 595, 720, 958, 1009
MboII	GAAGA	6 cut(s)	203, 298, 385, 715, 724, 728
MflI	RGATCY	2 cut(s)	720, 958
MhlI	GDGCHC	1 cut(s)	831
MluCI	AATT	2 cut(s)	494, 668
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	7 cut(s)	119, 123, 445, 523, 688, 844, 1000
Mph1103I	ATGCAT	1 cut(s)	1072
MroI	TCCGGA	1 cut(s)	572
MseI	TTAA	3 cut(s)	159, 414, 680
MslI	CAYNNNNRTG	2 cut(s)	264, 414
MspA1I	CMGCKG	2 cut(s)	550, 929
MspI	CCGG	2 cut(s)	188, 573
MspR9I	CCNGG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	900, 997
MvaI	CCWGG	1 cut(s)	741
MwoI	GCNNNNNNNGC	1 cut(s)	544
NcoI	CCATGG	1 cut(s)	541
NdeII	GATC	8 cut(s)	246, 337, 358, 562, 595, 720, 958, 1009
NlaIII	CATG	6 cut(s)	51, 351, 413, 509, 526, 545
NlaIV	GGNNCC	4 cut(s)	186, 421, 456, 960
NmuCI	GTSAC	3 cut(s)	391, 864, 985
NsiI	ATGCAT	1 cut(s)	1072
NspI	RCATGY	4 cut(s)	51, 351, 413, 526
PciI	ACATGT	1 cut(s)	409
PctI	GAATGC	2 cut(s)	900, 997
PfeI	GAWTC	2 cut(s)	315, 733
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	5 cut(s)	549, 552, 844, 862, 928
PscI	ACATGT	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	4 cut(s)	186, 421, 456, 960
PspPI	GGNCC	3 cut(s)	420, 455, 746
PsuI	RGATCY	2 cut(s)	720, 958
PvuII	CAGCTG	2 cut(s)	550, 929
RseI	CAYNNNNRTG	2 cut(s)	264, 414
SaqAI	TTAA	3 cut(s)	159, 414, 680
SatI	GCNGC	5 cut(s)	548, 551, 843, 861, 927
Sau3AI	GATC	8 cut(s)	246, 337, 358, 562, 595, 720, 958, 1009
Sau96I	GGNCC	3 cut(s)	420, 455, 746
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	1 cut(s)	831
SfaNI	GCATC	2 cut(s)	88, 1057
SinI	GGWCC	3 cut(s)	420, 455, 746
SmiMI	CAYNNNNRTG	2 cut(s)	264, 414
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SpeI	ACTAGT	1 cut(s)	883
Sse9I	AATT	2 cut(s)	494, 668
SsiI	CCGC	2 cut(s)	891, 914
SspMI	CTAG	4 cut(s)	527, 807, 854, 884
StyD4I	CCNGG	1 cut(s)	739
StyI	CCWWGG	1 cut(s)	541
TaaI	ACNGT	2 cut(s)	307, 397
TasI	AATT	2 cut(s)	494, 668
TfiI	GAWTC	2 cut(s)	315, 733
Tru1I	TTAA	3 cut(s)	159, 414, 680
Tru9I	TTAA	3 cut(s)	159, 414, 680
TscAI	CASTG	1 cut(s)	1065
TseFI	GTSAC	3 cut(s)	391, 864, 985
TseI	GCWGC	5 cut(s)	547, 550, 842, 860, 926
Tsp45I	GTSAC	3 cut(s)	391, 864, 985
TspDTI	ATGAA	1 cut(s)	1033
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	1 cut(s)	1065
Van91I	CCANNNNNTGG	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	827
VpaK11BI	GGWCC	3 cut(s)	420, 455, 746
XapI	RAATTY	2 cut(s)	494, 668
XceI	RCATGY	4 cut(s)	51, 351, 413, 526
XspI	CTAG	4 cut(s)	527, 807, 854, 884
Zsp2I	ATGCAT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.