FvH4_1g09130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013587
Physical Location & Seq
Reverse (-)
4858579 .. 4860672
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09130.t1

Sequence Viewer

Length: 726 bp
ATGGGGTCGGACGAGATCGATAGCTTGGAGAAGGGTTTGCTGCCGGGGAATGAAGAAGAGGCGGTGCTCTATGCGGCGTCGTTTCGGGAGATGGAGGAGAGTTTCGTGAAGTACCAAACAGCGCAGTGGGTGCTGTACTCGGCGCTGTTGATATTGGCGTGGGGGATTGGGTTCTTTATGTTGCTGTATCTTCCGGTCCGGCGGTTTATTCTAAGGAAGGATATCCGGTCTAGGAAGCTGTATTTGACTTCCAATGCCATTGTCTATAAGGTTACGAGGCCGGTTCCGATTCCGTTTTTTGGGGTGTTGAAGAAGGAGAAGCATGTTTTGTTGGCTTCGGTGGCTGATGTTGTGATCGAGCAAGGATATCTGCAGTCTCTCTTTGGTGTATACTCACTTAGAATAGAGCATGCTGGTGTCAGAAGGCCTCCAAGTGATGATGTTCAAATCCATGGCATTGCAAATCCAAGTGCTTTTAGGAAGGCTGTCCTAATGCGCCTTTCAAGCATGACGAATGAGGTTTTCTCTAGACAAGTTTCAACAATGGAAGATGTTCCAAATTTGAGGCTTCAGATGTCCCCATCAAAATCTGTAAGGCATGATTCATTTTCATACCCAGGGGAGCTAACACTATTGCAGAAACTTGAGGAAGTTGGAAGTTCCGTAAAGAGGGTCCAAAGTTTAATTGAGGAGCAACACTCTCAAACAGCAGAGCGTATAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.41

Weight (kDa)

7.92

Isoelectric Point (pI)

60.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7642 PF24649 73 - 171 3e-50 Domain of unknown function (DUF7642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013587)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09130
malus_domestica MD02G1096900.v1.1 MD15G1221700.v1.1
prunus_persica Prupe.7G194000_v2.0.a1
pyrus_communis pycom02g07690 pycom15g19620
rosa_chinensis RchiOBHm_Chr2g0095521
rosa_laevigata RLG00000016575
rosa_multiflora Rmu_sc0002541.1_g000031
rosa_roxburghii Rroxscaffold_2G00146230
rosa_rugosa Rorug02G0052100 Rorug02G0471700
rosa_samantha Rh2AG099900 Rh2BG101300 Rh2CG103500 Rh2DG100800
rosa_wichuraiana Rw2G007580 Rw7G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 390
AciI CCGC 3 cut(s) 62, 74, 202
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 554
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 2 cut(s) 113, 137
AfiI CCNNNNNNNGG 2 cut(s) 299, 669
AgsI TTSAA 4 cut(s) 310, 446, 504, 540
AjnI CCWGG 1 cut(s) 616
AluBI AGCT 3 cut(s) 24, 238, 625
AluI AGCT 3 cut(s) 24, 238, 625
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 381
AoxI GGCC 2 cut(s) 278, 425
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 559
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 3 cut(s) 124, 145, 498
AspS9I GGNCC 2 cut(s) 196, 673
AsuC2I CCSGG 1 cut(s) 45
AvaII GGWCC 2 cut(s) 196, 673
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 85, 589
BciT130I CCWGG 1 cut(s) 618
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 2 cut(s) 231, 528
BfmI CTRYAG 1 cut(s) 371
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 2 cut(s) 41, 75
BlsI GCNGC 2 cut(s) 42, 76
Bme1390I CCNGG 2 cut(s) 45, 618
Bme18I GGWCC 2 cut(s) 196, 673
BmgT120I GGNCC 2 cut(s) 196, 673
BmiI GGNNCC 2 cut(s) 285, 674
BmrFI CCNGG 2 cut(s) 45, 618
BplI GAGNNNNNCTC 4 cut(s) 509, 541, 683, 715
BpuEI CTTGAG 1 cut(s) 665
BpuMI CCSGG 1 cut(s) 45
Bsa29I ATCGAT 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 4 cut(s) 44, 451, 616, 617
BsaWI WCCGGW 2 cut(s) 193, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 669
Bse118I RCCGGY 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 618
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 4 cut(s) 44, 451, 616, 617
BseLI CCNNNNNNNGG 2 cut(s) 299, 669
BseMI GCAATG 1 cut(s) 456
BseRI GAGGAG 2 cut(s) 110, 704
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 2 cut(s) 280, 427
BshVI ATCGAT 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 5 cut(s) 44, 194, 199, 226, 281
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 2 cut(s) 299, 669
BsmAI GTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 562
BsnI GGCC 2 cut(s) 280, 427
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 15, 354
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 3 cut(s) 62, 74, 202
BspANI GGCC 2 cut(s) 280, 427
BspDI ATCGAT 1 cut(s) 18
BspLI GGNNCC 2 cut(s) 285, 674
BspMAI CTGCAG 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 4 cut(s) 44, 451, 616, 617
BssMI GATC 2 cut(s) 15, 354
BssNAI GTATAC 1 cut(s) 391
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 451
Bst1107I GTATAC 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 618
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 212, 398
BstDSI CCRYGG 1 cut(s) 451
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 3 cut(s) 124, 145, 498
BstKTI GATC 2 cut(s) 18, 357
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 2 cut(s) 15, 354
BstMWI GCNNNNNNNGC 3 cut(s) 130, 341, 504
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 2 cut(s) 326, 413
BstSCI CCNGG 2 cut(s) 43, 616
BstSFI CTRYAG 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 27
BstZ17I GTATAC 1 cut(s) 391
Bsu15I ATCGAT 1 cut(s) 18
BsuRI GGCC 2 cut(s) 280, 427
BsuTUI ATCGAT 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 411
CfoI GCGC 3 cut(s) 124, 145, 498
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 196, 673
ClaI ATCGAT 1 cut(s) 18
CpoI CGGWCCG 1 cut(s) 196
CseI GACGC 1 cut(s) 66
Csp6I GTAC 2 cut(s) 112, 136
CspI CGGWCCG 1 cut(s) 196
CviAII CATG 5 cut(s) 323, 410, 452, 508, 599
CviJI RGCY 9 cut(s) 24, 238, 280, 335, 344, 427, 485, 568, 625
CviKI_1 RGCY 9 cut(s) 24, 238, 280, 335, 344, 427, 485, 568, 625
CviQI GTAC 2 cut(s) 112, 136
DdeI CTNAG 2 cut(s) 212, 398
DpnI GATC 2 cut(s) 17, 356
DpnII GATC 2 cut(s) 15, 354
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 451
Eco147I AGGCCT 1 cut(s) 427
Eco32I GATATC 2 cut(s) 223, 368
Eco47I GGWCC 2 cut(s) 196, 673
Eco57I CTGAAG 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 616
EcoRV GATATC 2 cut(s) 223, 368
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 5 cut(s) 326, 413, 455, 511, 602
FaqI GGGAC 1 cut(s) 562
FatI CATG 5 cut(s) 322, 409, 451, 507, 598
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 41, 75
Fsp4HI GCNGC 2 cut(s) 41, 75
FspBI CTAG 2 cut(s) 231, 528
GlaI GCGC 3 cut(s) 123, 144, 497
GluI GCNGC 2 cut(s) 41, 75
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 2 cut(s) 280, 427
HapII CCGG 5 cut(s) 44, 194, 199, 226, 281
HgaI GACGC 1 cut(s) 66
HhaI GCGC 3 cut(s) 124, 145, 498
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 5 cut(s) 326, 413, 455, 511, 602
Hin6I GCGC 3 cut(s) 122, 143, 496
HinP1I GCGC 3 cut(s) 122, 143, 496
HinfI GANTC 2 cut(s) 289, 602
HpaII CCGG 5 cut(s) 44, 194, 199, 226, 281
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 4 cut(s) 10, 288, 422, 573
Hpy188III TCNNGA 3 cut(s) 86, 106, 528
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 5 cut(s) 25, 211, 307, 417, 475
HpyCH4V TGCA 3 cut(s) 373, 461, 637
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 341, 504
HpyF3I CTNAG 2 cut(s) 212, 398
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 5 cut(s) 326, 413, 455, 511, 602
HspAI GCGC 3 cut(s) 122, 143, 496
Kzo9I GATC 2 cut(s) 15, 354
LmnI GCTCC 2 cut(s) 622, 691
LpnPI CCDG 8 cut(s) 57, 207, 212, 239, 294, 399, 603, 630
Lsp1109I GCAGC 1 cut(s) 27
MaeI CTAG 2 cut(s) 231, 528
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 17, 356
MboI GATC 2 cut(s) 15, 354
MboII GAAGA 5 cut(s) 65, 68, 182, 322, 560
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 2 cut(s) 559, 684
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 9 cut(s) 52, 88, 270, 438, 511, 558, 640, 663, 682
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 1 cut(s) 683
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 5 cut(s) 44, 194, 199, 226, 281
MspR9I CCNGG 2 cut(s) 45, 618
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 3 cut(s) 130, 341, 504
NciI CCSGG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 451
NdeII GATC 2 cut(s) 15, 354
NlaIII CATG 5 cut(s) 326, 413, 455, 511, 602
NlaIV GGNNCC 2 cut(s) 285, 674
NmeAIII GCCGAG 1 cut(s) 119
NspI RCATGY 2 cut(s) 326, 413
PaeI GCATGC 1 cut(s) 413
PasI CCCWGGG 1 cut(s) 617
PceI AGGCCT 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 2 cut(s) 289, 602
PkrI GCNGC 2 cut(s) 42, 76
Psp6I CCWGG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 2 cut(s) 285, 674
PspPI GGNCC 2 cut(s) 196, 673
PstI CTGCAG 1 cut(s) 375
RsaI GTAC 2 cut(s) 113, 137
RsaNI GTAC 2 cut(s) 112, 136
RseI CAYNNNNRTG 1 cut(s) 414
Rsr2I CGGWCCG 1 cut(s) 196
RsrII CGGWCCG 1 cut(s) 196
SaqAI TTAA 1 cut(s) 683
SatI GCNGC 2 cut(s) 41, 75
Sau3AI GATC 2 cut(s) 15, 354
Sau96I GGNCC 2 cut(s) 196, 673
ScrFI CCNGG 2 cut(s) 45, 618
SduI GDGCHC 1 cut(s) 69
SetI ASST 5 cut(s) 26, 240, 273, 522, 627
SfcI CTRYAG 1 cut(s) 371
SinI GGWCC 2 cut(s) 196, 673
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
SphI GCATGC 1 cut(s) 413
Sse9I AATT 2 cut(s) 559, 684
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 3 cut(s) 62, 74, 202
SspMI CTAG 2 cut(s) 231, 528
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 43, 616
StyI CCWWGG 1 cut(s) 451
TaqI TCGA 2 cut(s) 18, 357
TasI AATT 2 cut(s) 559, 684
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 2 cut(s) 289, 602
Tru1I TTAA 1 cut(s) 683
Tru9I TTAA 1 cut(s) 683
TscAI CASTG 1 cut(s) 131
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 66, 594, 600
TspGWI ACGGA 2 cut(s) 282, 652
TspRI CASTG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 196, 673
XapI RAATTY 1 cut(s) 559
XbaI TCTAGA 1 cut(s) 527
XceI RCATGY 2 cut(s) 326, 413
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 2 cut(s) 231, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.