Rorug02G0471700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013587
Physical Location & Seq
Reverse (-)
60319719 .. 60320090
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0471700.1

Sequence Viewer

Length: 372 bp
ATGGCCTGGCATGATGAGTACATGCAAGCTAACCGGTCTGCTGCCGTCTCCTTTCAAGACCGATCACAACCCAAGAAGCACTGGACTCCCCCAGTTGATGGTTTCTTAAAGTTGAATGTGGATGGTTCCTTCCTGCCTTCAATCCCGTATGGTGGTACGGGGGGTGTAATTAGAGACTCCCATGGTCAGTTCATTGCTGGCTTCTCTTGTAGAATGGAGTTTGTTAGCTCCCCGTTACACATTGAGTTACTTTCTTTGAAGAATGGATTAGAGCTGCTTCAGGCTATGCAGATCACACGAGCTATAGTAGAGGTGACTCCTTACTTGCGGTGCAGGCTATTAACTCAACAGTTGGGGACCTCTCCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.72

Weight (kDa)

7.85

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 39 - 105 1.6e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013587)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09130
malus_domestica MD02G1096900.v1.1 MD15G1221700.v1.1
prunus_persica Prupe.7G194000_v2.0.a1
pyrus_communis pycom02g07690 pycom15g19620
rosa_chinensis RchiOBHm_Chr2g0095521
rosa_laevigata RLG00000016575
rosa_multiflora Rmu_sc0002541.1_g000031
rosa_roxburghii Rroxscaffold_2G00146230
rosa_rugosa Rorug02G0052100 Rorug02G0471700
rosa_samantha Rh2AG099900 Rh2BG101300 Rh2CG103500 Rh2DG100800
rosa_wichuraiana Rw2G007580 Rw7G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 98
AciI CCGC 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 2 cut(s) 20, 157
AfiI CCNNNNNNNGG 2 cut(s) 98, 152
AgeI ACCGGT 1 cut(s) 33
AgsI TTSAA 4 cut(s) 56, 115, 141, 259
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 4 cut(s) 29, 228, 274, 302
AluI AGCT 4 cut(s) 29, 228, 274, 302
Alw26I GTCTC 2 cut(s) 52, 168
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 41, 274
AsiGI ACCGGT 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 325
AvaII GGWCC 1 cut(s) 357
BauI CACGAG 1 cut(s) 297
BbvI GCAGC 2 cut(s) 28, 261
BccI CCATC 2 cut(s) 92, 116
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 2 cut(s) 52, 168
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 2 cut(s) 42, 275
BlsI GCNGC 2 cut(s) 43, 276
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 2 cut(s) 127, 358
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 86
BmuI ACTGGG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 181
BsaWI WCCGGW 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 152
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 86, 92
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 98, 152
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 86, 92
BseXI GCAGC 2 cut(s) 28, 261
BsgI GTGCAG 1 cut(s) 352
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 33
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 2 cut(s) 98, 152
BsmAI GTCTC 2 cut(s) 52, 168
BsmBI CGTCTC 1 cut(s) 52
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 62, 291
Bsp19I CCATGG 1 cut(s) 181
BspACI CCGC 1 cut(s) 328
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 2 cut(s) 127, 358
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 2 cut(s) 86, 92
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 2 cut(s) 62, 291
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 181
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 351
BstC8I GCNNGC 3 cut(s) 27, 199, 335
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 2 cut(s) 65, 294
BstMAI GTCTC 2 cut(s) 52, 168
BstMBI GATC 2 cut(s) 62, 291
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 7
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 28, 261
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 27, 199, 335
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 357
Csp6I GTAC 2 cut(s) 19, 156
CspAI ACCGGT 1 cut(s) 33
CviAII CATG 3 cut(s) 11, 22, 182
CviJI RGCY 8 cut(s) 5, 29, 201, 228, 274, 284, 302, 337
CviKI_1 RGCY 8 cut(s) 5, 29, 201, 228, 274, 284, 302, 337
CviQI GTAC 2 cut(s) 19, 156
DpnI GATC 2 cut(s) 64, 293
DpnII GATC 2 cut(s) 62, 291
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 3 cut(s) 14, 25, 185
FaiI YATR 6 cut(s) 12, 23, 150, 183, 287, 305
FatI CATG 3 cut(s) 10, 21, 181
Fnu4HI GCNGC 2 cut(s) 42, 275
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 42, 275
GluI GCNGC 2 cut(s) 42, 275
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 34
Hin1II CATG 3 cut(s) 14, 25, 185
HinfI GANTC 3 cut(s) 85, 176, 316
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 325
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 139, 147
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 3 cut(s) 25, 289, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
Hsp92II CATG 3 cut(s) 14, 25, 185
Kzo9I GATC 2 cut(s) 62, 291
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 8 cut(s) 19, 47, 67, 105, 146, 183, 266, 319
Lsp1109I GCAGC 2 cut(s) 28, 261
MaeIII GTNAC 3 cut(s) 234, 246, 313
MalI GATC 2 cut(s) 64, 293
MboI GATC 2 cut(s) 62, 291
MboII GAAGA 1 cut(s) 271
MluCI AATT 1 cut(s) 168
MlyI GAGTC 3 cut(s) 79, 170, 310
MnlI CCTC 2 cut(s) 304, 370
MseI TTAA 2 cut(s) 107, 341
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 334
NcoI CCATGG 1 cut(s) 181
NdeII GATC 2 cut(s) 62, 291
NlaIII CATG 3 cut(s) 14, 25, 185
NlaIV GGNNCC 2 cut(s) 127, 358
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 98
PinAI ACCGGT 1 cut(s) 33
PkrI GCNGC 2 cut(s) 43, 276
PleI GAGTC 3 cut(s) 79, 170, 310
PpsI GAGTC 3 cut(s) 79, 170, 310
PpuMI RGGWCCY 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 127, 358
PspPI GGNCC 1 cut(s) 357
PspPPI RGGWCCY 1 cut(s) 357
RsaI GTAC 2 cut(s) 20, 157
RsaNI GTAC 2 cut(s) 19, 156
SaqAI TTAA 2 cut(s) 107, 341
SatI GCNGC 2 cut(s) 42, 275
Sau3AI GATC 2 cut(s) 62, 291
Sau96I GGNCC 1 cut(s) 357
SchI GAGTC 3 cut(s) 79, 170, 310
ScrFI CCNGG 1 cut(s) 7
SetI ASST 6 cut(s) 31, 230, 276, 304, 315, 362
SfcI CTRYAG 1 cut(s) 303
SinI GGWCC 1 cut(s) 357
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 351
TaqII GACCGA 1 cut(s) 75
TasI AATT 1 cut(s) 168
TatI WGTACW 1 cut(s) 18
Tru1I TTAA 2 cut(s) 107, 341
Tru9I TTAA 2 cut(s) 107, 341
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 2 cut(s) 41, 274
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 181
TspRI CASTG 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.