Rroxscaffold_2G00146230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013587
Physical Location & Seq
Forward (+)
84169562 .. 84171322
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146230.1

Sequence Viewer

Length: 696 bp
ATGGCTTCGGACGACGTCGTTGAGATCGATAGCTTAGAGAAGGGTTTGCTGTCCGGAGGTGGAAATGAAGAAGAGCCGGTTCTGTATGCGGCGTCGTTTCGGGAAATGGAGGAGAATTTCGTCAAGTACCAAACAGCGCAGTGGCTTCTGTACTCTGCGCTTTTGATATTGGCGTGGGGGATTGGGTTGTTTATGTTGCTTTATCTTCCGGTTCGGAGGTATATTCTTCGCAAGGATATTCGGTCCAGAAAGCTTTACTTGACACCGAACGCCATCATCTATAAAGTTACGAGGCCAGTTCCGATTCCATTTTTCGGGGTGTTGAACAAGGAGAAGCATGTTTTGTTGCCTTCAGTGGCTGATGTTGTAATCGAGCAAGGATATCTGCAGTCTCTCTTTGGTGTATACTCGCTTCGAATAGAGCATGTTGGTGTCAGAAGGCCTCCAAGTGATGATGTTCAAATCCATGGCATTGCAAATCCAAATGCTTTTAGGAAGGCAGTGCTAATGCGCCTTTCAAGCATGACGAATGAGGTTTTCTCTAGACAAGTTTCCACAGTTGAAGATGTTCCAAATTTGAGGCTTCAGATGTCCCCATCAAAATCTCTCAGGCATGATTCATTTTCATACCCAGGGGAGCTAACACTACTGCAGAAACTTGAGGAAGTTGGAAGTTCTGTAAAGGTAGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

26.23

Weight (kDa)

6.93

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7642 PF24649 78 - 176 2.5e-50 Domain of unknown function (DUF7642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013587)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09130
malus_domestica MD02G1096900.v1.1 MD15G1221700.v1.1
prunus_persica Prupe.7G194000_v2.0.a1
pyrus_communis pycom02g07690 pycom15g19620
rosa_chinensis RchiOBHm_Chr2g0095521
rosa_laevigata RLG00000016575
rosa_multiflora Rmu_sc0002541.1_g000031
rosa_roxburghii Rroxscaffold_2G00146230
rosa_rugosa Rorug02G0052100 Rorug02G0471700
rosa_samantha Rh2AG099900 Rh2BG101300 Rh2CG103500 Rh2DG100800
rosa_wichuraiana Rw2G007580 Rw7G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 405
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 1 cut(s) 89
AcsI RAATTY 2 cut(s) 115, 574
AcuI CTGAAG 2 cut(s) 336, 569
AcyI GRCGYC 2 cut(s) 15, 92
AfaI GTAC 2 cut(s) 128, 152
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 4 cut(s) 325, 461, 519, 563
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 3 cut(s) 33, 253, 640
AluI AGCT 3 cut(s) 33, 253, 640
Alw26I GTCTC 1 cut(s) 396
AlwNI CAGNNNCTG 1 cut(s) 359
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 2 cut(s) 293, 440
ApoI RAATTY 2 cut(s) 115, 574
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 3 cut(s) 139, 160, 513
AspS9I GGNCC 1 cut(s) 243
AsuII TTCGAA 1 cut(s) 415
AvaII GGWCC 1 cut(s) 243
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
BccI CCATC 2 cut(s) 281, 604
BciT130I CCWGG 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 2 cut(s) 386, 650
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 633
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 633
BplI GAGNNNNNCTC 2 cut(s) 524, 556
Bpu14I TTCGAA 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 680
Bsa29I ATCGAT 1 cut(s) 27
BsaHI GRCGYC 2 cut(s) 15, 92
BsaJI CCNNGG 3 cut(s) 466, 631, 632
BsaWI WCCGGW 2 cut(s) 53, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 471
BseAI TCCGGA 1 cut(s) 53
BseBI CCWGG 1 cut(s) 633
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 3 cut(s) 466, 631, 632
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 622
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 125
BshFI GGCC 2 cut(s) 295, 442
BshVI ATCGAT 1 cut(s) 27
BsiSI CCGG 3 cut(s) 54, 77, 209
BslFI GGGAC 1 cut(s) 577
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 577
BsnI GGCC 2 cut(s) 295, 442
Bsp119I TTCGAA 1 cut(s) 415
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 295, 442
BspCNI CTCAG 1 cut(s) 621
BspDI ATCGAT 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 53
BspMAI CTGCAG 2 cut(s) 390, 654
BspQI GCTCTTC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 3 cut(s) 466, 631, 632
BssMI GATC 1 cut(s) 24
BssNAI GTATAC 1 cut(s) 406
BssNI GRCGYC 2 cut(s) 15, 92
BssT1I CCWWGG 1 cut(s) 466
Bst1107I GTATAC 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 2 cut(s) 15, 92
BstBI TTCGAA 1 cut(s) 415
BstDEI CTNAG 2 cut(s) 34, 608
BstDSI CCRYGG 1 cut(s) 466
BstHHI GCGC 3 cut(s) 139, 160, 513
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 519
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 2 cut(s) 341, 428
BstSCI CCNGG 1 cut(s) 631
BstSFI CTRYAG 2 cut(s) 386, 650
BstZ17I GTATAC 1 cut(s) 406
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 2 cut(s) 295, 442
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 466
BtsI GCAGTG 2 cut(s) 146, 507
BtsIMutI CAGTG 3 cut(s) 146, 360, 507
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 3 cut(s) 139, 160, 513
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 243
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 127, 151
CviAII CATG 5 cut(s) 338, 425, 467, 523, 614
CviQI GTAC 2 cut(s) 127, 151
DdeI CTNAG 2 cut(s) 34, 608
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 466
Eco147I AGGCCT 1 cut(s) 442
Eco32I GATATC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 336, 569
EcoRII CCWGG 1 cut(s) 631
EcoRV GATATC 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 466
FaeI CATG 5 cut(s) 341, 428, 470, 526, 617
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 577
FatI CATG 5 cut(s) 337, 424, 466, 522, 613
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 543
GlaI GCGC 3 cut(s) 138, 159, 512
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 2 cut(s) 295, 442
HapII CCGG 3 cut(s) 54, 77, 209
HgaI GACGC 1 cut(s) 81
HhaI GCGC 3 cut(s) 139, 160, 513
Hin1I GRCGYC 2 cut(s) 15, 92
Hin1II CATG 5 cut(s) 341, 428, 470, 526, 617
Hin6I GCGC 3 cut(s) 137, 158, 511
HinP1I GCGC 3 cut(s) 137, 158, 511
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 304, 617
HpaII CCGG 3 cut(s) 54, 77, 209
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 5 cut(s) 10, 216, 303, 437, 588
Hpy188III TCNNGA 4 cut(s) 54, 101, 246, 543
Hpy8I GTNNAC 1 cut(s) 406
Hpy99I CGWCG 3 cut(s) 17, 20, 97
HpyAV CCTTC 4 cut(s) 34, 360, 432, 490
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 388, 476, 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 519
HpyF3I CTNAG 2 cut(s) 34, 608
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 2 cut(s) 15, 92
Hsp92II CATG 5 cut(s) 341, 428, 470, 526, 617
HspAI GCGC 3 cut(s) 137, 158, 511
Kpn2I TCCGGA 1 cut(s) 53
Kzo9I GATC 1 cut(s) 24
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 637
LpnPI CCDG 8 cut(s) 67, 90, 222, 259, 309, 595, 618, 645
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 5 cut(s) 80, 83, 197, 218, 575
MluCI AATT 2 cut(s) 115, 574
MmeI TCCRAC 1 cut(s) 649
MnlI CCTC 8 cut(s) 50, 103, 210, 285, 453, 526, 573, 655
MroI TCCGGA 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 429
MspI CCGG 3 cut(s) 54, 77, 209
MspR9I CCNGG 1 cut(s) 633
MvaI CCWGG 1 cut(s) 633
MwoI GCNNNNNNNGC 1 cut(s) 519
NcoI CCATGG 1 cut(s) 466
NdeII GATC 1 cut(s) 24
NlaIII CATG 5 cut(s) 341, 428, 470, 526, 617
NspI RCATGY 2 cut(s) 341, 428
NspV TTCGAA 1 cut(s) 415
PasI CCCWGGG 1 cut(s) 632
PceI AGGCCT 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 304, 617
PflFI GACNNNGTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 631
PspGI CCWGG 1 cut(s) 631
PspPI GGNCC 1 cut(s) 243
PstI CTGCAG 2 cut(s) 390, 654
PstNI CAGNNNCTG 1 cut(s) 359
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 2 cut(s) 128, 152
RsaNI GTAC 2 cut(s) 127, 151
RseI CAYNNNNRTG 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 66
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 633
SetI ASST 8 cut(s) 18, 35, 61, 221, 255, 537, 642, 687
SfcI CTRYAG 2 cut(s) 386, 650
SfuI TTCGAA 1 cut(s) 415
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 2 cut(s) 115, 574
SseBI AGGCCT 1 cut(s) 442
SsiI CCGC 1 cut(s) 89
SspMI CTAG 1 cut(s) 543
StuI AGGCCT 1 cut(s) 442
StyD4I CCNGG 1 cut(s) 631
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 1 cut(s) 18
TaqI TCGA 3 cut(s) 27, 372, 415
TaqII GACCGA 1 cut(s) 231
TasI AATT 2 cut(s) 115, 574
TatI WGTACW 1 cut(s) 150
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 2 cut(s) 304, 617
TscAI CASTG 3 cut(s) 146, 360, 507
TspDTI ATGAA 3 cut(s) 81, 609, 615
TspRI CASTG 3 cut(s) 146, 360, 507
Tth111I GACNNNGTC 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 243
XapI RAATTY 2 cut(s) 115, 574
XbaI TCTAGA 1 cut(s) 542
XceI RCATGY 2 cut(s) 341, 428
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 1 cut(s) 543
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.