Rorug02G0052100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013587
Physical Location & Seq
Reverse (-)
3996136 .. 3997762
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0052100.1

Sequence Viewer

Length: 819 bp
ATGAGCAAGTTCAAATCAACATATGGGTTTGATATTTCCTACAAGGTTGCCTTGAAAGCAAAGCATAGGGCTAAGGAAGCGATTTATGGTTCCGATGCAGACTCGTTCAGCAAGTTATCTTGGTATAAGGAAGCTGTTTTGCAAACTTACGGAGGTTGTGTTGAAGGCTTCCAATTCTGTTTGCCTGTGTTCTATGTTGATGGAACGTTTGGTAAAAGCATTTACAAGGGTCAGATTCTTTCTGCAACTGGAAGGAATGGAAATCAAGGTTTCTACCCTCTAGCCATATGTTTTTGTGATTCTGAGACAGATGCAAACTGGACATTCTTTTTCAAGCATTTGAAGAGTTTGCTTGAACCTCAAGGAAGAGTCATCACATTTATTAGTGATCGGGGTACTGGATTATTGAGTGCTTTCGATAAGACAAGAATAAAACAAATAGAGCAGATGGGTGAGAGGAGGGATGAGGCACAACGTTGGACCACAGAACTAACTCCCAAAATGGAGGAAAGGTTGAAGGCCTTGCTGCAATACAAGCTGCCTCTGAAAAATGTACATGATTATATTGATAAGTACTTTCGTGTTGATATGTTCAAGAAGAGCTACAGTTTTCCTATCCGGCCGATAACCAATGTTGATATGTCTTCTTCTGAATCTGAAACTGAATGTATATTACCTCCCCTTTCGAAGAGGCCACCCGGGAGGCCTAGGGTGAAGCGGTTCAAGTCGGTTGGAGAGGTTGAAAAGAAGCTGATTCGTTGTGGCAAAATGGGCACTCATAACAAGTTGAGCTGCACTGAACCTCTCGTTCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.21

Weight (kDa)

9.4

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 63 - 140 4.3e-09 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013587)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09130
malus_domestica MD02G1096900.v1.1 MD15G1221700.v1.1
prunus_persica Prupe.7G194000_v2.0.a1
pyrus_communis pycom02g07690 pycom15g19620
rosa_chinensis RchiOBHm_Chr2g0095521
rosa_laevigata RLG00000016575
rosa_multiflora Rmu_sc0002541.1_g000031
rosa_roxburghii Rroxscaffold_2G00146230
rosa_rugosa Rorug02G0052100 Rorug02G0471700
rosa_samantha Rh2AG099900 Rh2BG101300 Rh2CG103500 Rh2DG100800
rosa_wichuraiana Rw2G007580 Rw7G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 718
AclI AACGTT 2 cut(s) 206, 475
AcoI YGGCCR 1 cut(s) 620
AfaI GTAC 3 cut(s) 397, 555, 575
AluBI AGCT 5 cut(s) 134, 538, 603, 751, 792
AluI AGCT 5 cut(s) 134, 538, 603, 751, 792
Alw26I GTCTC 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 698
AoxI GGCC 4 cut(s) 519, 620, 692, 704
ApeKI GCWGC 3 cut(s) 526, 538, 792
Asp700I GAANNNNTTC 1 cut(s) 719
AspA2I CCTAGG 1 cut(s) 707
AspS9I GGNCC 1 cut(s) 480
AsuC2I CCSGG 2 cut(s) 699, 700
AsuHPI GGTGA 2 cut(s) 464, 724
AsuII TTCGAA 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 698
AvaII GGWCC 1 cut(s) 480
AvrII CCTAGG 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 776
BbsI GAAGAC 1 cut(s) 636
BbvI GCAGC 3 cut(s) 513, 525, 779
BccI CCATC 2 cut(s) 194, 442
BcnI CCSGG 2 cut(s) 699, 700
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 2 cut(s) 281, 708
BfmI CTRYAG 1 cut(s) 604
BisI GCNGC 3 cut(s) 527, 539, 793
BlnI CCTAGG 1 cut(s) 707
BlsI GCNGC 3 cut(s) 528, 540, 794
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 2 cut(s) 699, 700
Bme18I GGWCC 1 cut(s) 480
BmeT110I CYCGRG 1 cut(s) 698
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 699, 700
BmsI GCATC 2 cut(s) 85, 301
BpiI GAAGAC 1 cut(s) 636
Bpu10I CCTNAGC 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 345
BpuMI CCSGG 2 cut(s) 699, 700
BsaJI CCNNGG 2 cut(s) 698, 707
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 497, 527
Bse1I ACTGG 3 cut(s) 253, 323, 403
BseDI CCNNGG 2 cut(s) 698, 707
BseGI GGATG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 3 cut(s) 253, 323, 403
BseRI GAGGAG 1 cut(s) 472
BseSI GKGCMC 1 cut(s) 776
BseX3I CGGCCG 1 cut(s) 620
BseXI GCAGC 3 cut(s) 513, 525, 779
BsgI GTGCAG 1 cut(s) 778
Bsh1285I CGRYCG 1 cut(s) 623
BshFI GGCC 4 cut(s) 521, 622, 694, 706
BsiEI CGRYCG 1 cut(s) 623
BsiHKCI CYCGRG 1 cut(s) 698
BsiSI CCGG 2 cut(s) 619, 699
BsmAI GTCTC 1 cut(s) 299
BsnI GGCC 4 cut(s) 521, 622, 694, 706
BsoBI CYCGRG 1 cut(s) 698
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 1 cut(s) 776
Bsp1407I TGTACA 1 cut(s) 553
Bsp143I GATC 1 cut(s) 388
BspACI CCGC 1 cut(s) 718
BspANI GGCC 4 cut(s) 521, 622, 694, 706
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 91
BspQI GCTCTTC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 686
BsrGI TGTACA 1 cut(s) 553
BsrI ACTGG 3 cut(s) 253, 323, 403
BssECI CCNNGG 2 cut(s) 698, 707
BssMI GATC 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 707
Bst4CI ACNGT 1 cut(s) 608
Bst6I CTCTTC 4 cut(s) 338, 361, 593, 683
BstAUI TGTACA 1 cut(s) 553
BstBI TTCGAA 1 cut(s) 686
BstDEI CTNAG 2 cut(s) 72, 303
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 1 cut(s) 391
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 1 cut(s) 388
BstMCI CGRYCG 1 cut(s) 623
BstMWI GCNNNNNNNGC 4 cut(s) 56, 77, 535, 771
BstSCI CCNGG 2 cut(s) 697, 698
BstSFI CTRYAG 1 cut(s) 604
BstSLI GKGCMC 1 cut(s) 776
BstV1I GCAGC 3 cut(s) 513, 525, 779
BstV2I GAAGAC 1 cut(s) 636
BstZI CGGCCG 1 cut(s) 620
BsuRI GGCC 4 cut(s) 521, 622, 694, 706
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 795
Cfr13I GGNCC 1 cut(s) 480
Cfr9I CCCGGG 1 cut(s) 698
Csp6I GTAC 3 cut(s) 396, 554, 574
CviAII CATG 1 cut(s) 557
CviQI GTAC 3 cut(s) 396, 554, 574
DdeI CTNAG 2 cut(s) 72, 303
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 620
EagI CGGCCG 1 cut(s) 620
Eam1104I CTCTTC 4 cut(s) 338, 361, 593, 683
EarI CTCTTC 4 cut(s) 338, 361, 593, 683
EclXI CGGCCG 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 707
Eco147I AGGCCT 2 cut(s) 521, 706
Eco47I GGWCC 1 cut(s) 480
Eco52I CGGCCG 1 cut(s) 620
Eco88I CYCGRG 1 cut(s) 698
EcoT14I CCWWGG 1 cut(s) 707
ErhI CCWWGG 1 cut(s) 707
FaeI CATG 1 cut(s) 560
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 1 cut(s) 556
FauNDI CATATG 2 cut(s) 22, 287
Fnu4HI GCNGC 3 cut(s) 527, 539, 793
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 3 cut(s) 527, 539, 793
FspBI CTAG 2 cut(s) 281, 708
GluI GCNGC 3 cut(s) 527, 539, 793
HaeIII GGCC 4 cut(s) 521, 622, 694, 706
HapII CCGG 2 cut(s) 619, 699
Hin1II CATG 1 cut(s) 560
HinfI GANTC 6 cut(s) 101, 235, 299, 369, 653, 754
HpaII CCGG 2 cut(s) 619, 699
HphI GGTGA 2 cut(s) 464, 724
Hpy188I TCNGA 6 cut(s) 94, 234, 304, 546, 652, 658
Hpy188III TCNNGA 1 cut(s) 595
HpyAV CCTTC 3 cut(s) 158, 246, 511
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4IV ACGT 2 cut(s) 206, 475
HpyCH4V TGCA 6 cut(s) 98, 142, 245, 314, 529, 795
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 77, 535, 771
HpyF3I CTNAG 2 cut(s) 72, 303
HpySE526I ACGT 2 cut(s) 206, 475
Hsp92II CATG 1 cut(s) 560
Kzo9I GATC 1 cut(s) 388
LguI GCTCTTC 1 cut(s) 593
LpnPI CCDG 6 cut(s) 198, 234, 304, 384, 632, 712
Lsp1109I GCAGC 3 cut(s) 513, 525, 779
LweI GCATC 2 cut(s) 85, 301
MaeI CTAG 2 cut(s) 281, 708
MaeII ACGT 2 cut(s) 206, 475
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 6 cut(s) 355, 378, 610, 636, 639, 700
MhlI GDGCHC 1 cut(s) 776
MluCI AATT 1 cut(s) 173
MlyI GAGTC 2 cut(s) 95, 378
MmeI TCCRAC 2 cut(s) 458, 712
MroXI GAANNNNTTC 1 cut(s) 719
MspI CCGG 2 cut(s) 619, 699
MspR9I CCNGG 2 cut(s) 699, 700
MwoI GCNNNNNNNGC 4 cut(s) 56, 77, 535, 771
NciI CCSGG 2 cut(s) 699, 700
NdeI CATATG 2 cut(s) 22, 287
NdeII GATC 1 cut(s) 388
NlaIII CATG 1 cut(s) 560
NlaIV GGNNCC 1 cut(s) 91
NspV TTCGAA 1 cut(s) 686
PceI AGGCCT 2 cut(s) 521, 706
PciSI GCTCTTC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 4 cut(s) 235, 299, 653, 754
PkrI GCNGC 3 cut(s) 528, 540, 794
PleI GAGTC 2 cut(s) 95, 377
PpsI GAGTC 2 cut(s) 95, 377
Psp1406I AACGTT 2 cut(s) 206, 475
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 480
RsaI GTAC 3 cut(s) 397, 555, 575
RsaNI GTAC 3 cut(s) 396, 554, 574
SapI GCTCTTC 1 cut(s) 593
SatI GCNGC 3 cut(s) 527, 539, 793
Sau3AI GATC 1 cut(s) 388
Sau96I GGNCC 1 cut(s) 480
ScaI AGTACT 1 cut(s) 575
SchI GAGTC 2 cut(s) 95, 378
ScrFI CCNGG 2 cut(s) 699, 700
SduI GDGCHC 1 cut(s) 776
SfaNI GCATC 2 cut(s) 85, 301
SfcI CTRYAG 1 cut(s) 604
SfuI TTCGAA 1 cut(s) 686
SinI GGWCC 1 cut(s) 480
SmaI CCCGGG 1 cut(s) 700
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
Sse9I AATT 1 cut(s) 173
SseBI AGGCCT 2 cut(s) 521, 706
SsiI CCGC 1 cut(s) 718
SspMI CTAG 2 cut(s) 281, 708
StuI AGGCCT 2 cut(s) 521, 706
StyD4I CCNGG 2 cut(s) 697, 698
StyI CCWWGG 1 cut(s) 707
TaaI ACNGT 1 cut(s) 608
TaiI ACGT 2 cut(s) 209, 478
TaqI TCGA 2 cut(s) 417, 686
TasI AATT 1 cut(s) 173
TatI WGTACW 2 cut(s) 553, 573
TfiI GAWTC 4 cut(s) 235, 299, 653, 754
TscAI CASTG 1 cut(s) 802
TseI GCWGC 3 cut(s) 526, 538, 792
TspGWI ACGGA 1 cut(s) 165
TspMI CCCGGG 1 cut(s) 698
TspRI CASTG 1 cut(s) 802
VpaK11BI GGWCC 1 cut(s) 480
XmaI CCCGGG 1 cut(s) 698
XmaJI CCTAGG 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 2 cut(s) 281, 708
ZrmI AGTACT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.