Rw7G034180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013587
Physical Location & Seq
Reverse (-)
50637061 .. 50638660
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034180.1

Sequence Viewer

Length: 708 bp
ATGGCTTCGGAAGACGTGGTTGAGATCGATAGCTTAGAGAAGGGTTTGCTGTCCGGAGGTGGAAATGAAGAAGAGCCGGAGAATTTCATCAAGTACCAAACAACGCAGTGGCTTCTGTACTCCGCGCTTTTGATATTGGCGTGGGGGATTGGTTTGTTTATGTTGCTTTATCTTCCGGTTCGGAGGTATATTCTTCGGAAGGATATTCGGTCCAGGAAGCTTTACTTGACATCGAATGCCATCATCTATAAAGTTGCGAGGCCAGTTCCGATTCCATTTTTCGGGGTGTTGAACAAGGAGAAGCATGTTTTGTTGCCTTCAGTGGCTGATGTTGTAATCGAGCAAGGATATCTGCAGTCTCTCTTTGGTGTATACTCGCTTCGAATAGAGCATGTTGGTGTCAGAAGGCCTCCAAGTGATGATGTTCAAATCCATGGCATTGCAAATCCAAATGCTTTTAGGAAGGCAGTGCTAATGCGCCTTTCAAGCATGACGAATGTGGTTTTCTCTAGACAAGTTTCCACAGTTGAAGATGTTCCAAATTTGAGGCTTCAGATGTCCCCATCAAAATCTCTCAGGCATGATTCATTTTCATACCCAGGGGAGCTAACACTACTGCAGAAACTTGAGGAAGTTGGAAGTTCTAGGGTTCAAAGTTTAATTGAGGAACAACACTCTCAAACACCAGAACCTATAGTTAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.59

Weight (kDa)

6.98

Isoelectric Point (pI)

65.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7642 PF24649 67 - 165 1.1e-49 Domain of unknown function (DUF7642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013587)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09130
malus_domestica MD02G1096900.v1.1 MD15G1221700.v1.1
prunus_persica Prupe.7G194000_v2.0.a1
pyrus_communis pycom02g07690 pycom15g19620
rosa_chinensis RchiOBHm_Chr2g0095521
rosa_laevigata RLG00000016575
rosa_multiflora Rmu_sc0002541.1_g000031
rosa_roxburghii Rroxscaffold_2G00146230
rosa_rugosa Rorug02G0052100 Rorug02G0471700
rosa_samantha Rh2AG099900 Rh2BG101300 Rh2CG103500 Rh2DG100800
rosa_wichuraiana Rw2G007580 Rw7G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 372
AccII CGCG 1 cut(s) 125
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 1 cut(s) 123
AcsI RAATTY 2 cut(s) 82, 541
AcuI CTGAAG 2 cut(s) 303, 536
AfaI GTAC 2 cut(s) 95, 119
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 5 cut(s) 292, 428, 486, 530, 653
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 2 cut(s) 212, 598
AluBI AGCT 3 cut(s) 33, 220, 607
AluI AGCT 3 cut(s) 33, 220, 607
Alw26I GTCTC 1 cut(s) 363
AlwNI CAGNNNCTG 1 cut(s) 326
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 2 cut(s) 260, 407
ApoI RAATTY 2 cut(s) 82, 541
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 2 cut(s) 127, 480
AspS9I GGNCC 1 cut(s) 210
AsuII TTCGAA 1 cut(s) 382
AvaII GGWCC 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 363, 395
BbsI GAAGAC 1 cut(s) 18
BccI CCATC 2 cut(s) 248, 571
BciT130I CCWGG 2 cut(s) 214, 600
BcoDI GTCTC 1 cut(s) 363
BfaI CTAG 2 cut(s) 510, 645
BfmI CTRYAG 3 cut(s) 353, 617, 693
Bme1390I CCNGG 2 cut(s) 214, 600
Bme18I GGWCC 1 cut(s) 210
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 214, 600
BpiI GAAGAC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 647
Bsa29I ATCGAT 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 433, 598, 599
BsaWI WCCGGW 2 cut(s) 53, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 438
BseAI TCCGGA 1 cut(s) 53
BseBI CCWGG 2 cut(s) 214, 600
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 3 cut(s) 433, 598, 599
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 589
BseNI ACTGG 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 2 cut(s) 262, 409
BshVI ATCGAT 1 cut(s) 27
BsiSI CCGG 3 cut(s) 54, 77, 176
BslFI GGGAC 1 cut(s) 544
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 544
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 2 cut(s) 262, 409
Bsp119I TTCGAA 1 cut(s) 382
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 262, 409
BspCNI CTCAG 1 cut(s) 588
BspDI ATCGAT 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 53
BspFNI CGCG 1 cut(s) 125
BspMAI CTGCAG 2 cut(s) 357, 621
BspQI GCTCTTC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 433, 598, 599
BssMI GATC 1 cut(s) 24
BssNAI GTATAC 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 433
Bst1107I GTATAC 1 cut(s) 373
Bst2UI CCWGG 2 cut(s) 214, 600
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 34, 575
BstDSI CCRYGG 1 cut(s) 433
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 2 cut(s) 127, 480
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNI CCWGG 2 cut(s) 214, 600
BstNSI RCATGY 2 cut(s) 308, 395
BstSCI CCNGG 2 cut(s) 212, 598
BstSFI CTRYAG 3 cut(s) 353, 617, 693
BstUI CGCG 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 18
BstZ17I GTATAC 1 cut(s) 373
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 2 cut(s) 262, 409
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 433
BtrI CACGTC 1 cut(s) 16
BtsI GCAGTG 2 cut(s) 113, 474
BtsIMutI CAGTG 3 cut(s) 113, 327, 474
CaiI CAGNNNCTG 1 cut(s) 326
CfoI GCGC 2 cut(s) 127, 480
Cfr13I GGNCC 1 cut(s) 210
ClaI ATCGAT 1 cut(s) 27
Csp6I GTAC 2 cut(s) 94, 118
CviAII CATG 5 cut(s) 305, 392, 434, 490, 581
CviQI GTAC 2 cut(s) 94, 118
DdeI CTNAG 2 cut(s) 34, 575
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 433
Eco147I AGGCCT 1 cut(s) 409
Eco32I GATATC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 303, 536
EcoRII CCWGG 2 cut(s) 212, 598
EcoRV GATATC 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 5 cut(s) 308, 395, 437, 493, 584
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 1 cut(s) 544
FatI CATG 5 cut(s) 304, 391, 433, 489, 580
FblI GTMKAC 1 cut(s) 372
FspBI CTAG 2 cut(s) 510, 645
GlaI GCGC 2 cut(s) 126, 479
HaeIII GGCC 2 cut(s) 262, 409
HapII CCGG 3 cut(s) 54, 77, 176
HhaI GCGC 2 cut(s) 127, 480
Hin1II CATG 5 cut(s) 308, 395, 437, 493, 584
Hin6I GCGC 2 cut(s) 125, 478
HinP1I GCGC 2 cut(s) 125, 478
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 271, 584
HpaII CCGG 3 cut(s) 54, 77, 176
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 6 cut(s) 10, 183, 198, 270, 404, 555
Hpy188III TCNNGA 2 cut(s) 54, 510
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 5 cut(s) 34, 193, 327, 399, 457
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 355, 443, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 2 cut(s) 34, 575
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 5 cut(s) 308, 395, 437, 493, 584
HspAI GCGC 2 cut(s) 125, 478
Kpn2I TCCGGA 1 cut(s) 53
Kzo9I GATC 1 cut(s) 24
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 604
MaeI CTAG 2 cut(s) 510, 645
MaeII ACGT 1 cut(s) 15
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 6 cut(s) 23, 80, 83, 164, 185, 542
MluCI AATT 3 cut(s) 82, 541, 660
MmeI TCCRAC 1 cut(s) 616
MnlI CCTC 7 cut(s) 50, 177, 252, 420, 540, 622, 658
MroI TCCGGA 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 2 cut(s) 659, 699
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 3 cut(s) 54, 77, 176
MspR9I CCNGG 2 cut(s) 214, 600
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 2 cut(s) 214, 600
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 486
NcoI CCATGG 1 cut(s) 433
NdeII GATC 1 cut(s) 24
NlaIII CATG 5 cut(s) 308, 395, 437, 493, 584
NspI RCATGY 2 cut(s) 308, 395
NspV TTCGAA 1 cut(s) 382
PasI CCCWGGG 1 cut(s) 599
PceI AGGCCT 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 66
PctI GAATGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 2 cut(s) 271, 584
PfoI TCCNGGA 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 212, 598
PspGI CCWGG 2 cut(s) 212, 598
PspPI GGNCC 1 cut(s) 210
PstI CTGCAG 2 cut(s) 357, 621
PstNI CAGNNNCTG 1 cut(s) 326
RsaI GTAC 2 cut(s) 95, 119
RsaNI GTAC 2 cut(s) 94, 118
RseI CAYNNNNRTG 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 659, 699
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 214, 600
SetI ASST 7 cut(s) 18, 35, 61, 188, 222, 609, 694
SfcI CTRYAG 3 cut(s) 353, 617, 693
SfuI TTCGAA 1 cut(s) 382
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 3 cut(s) 82, 541, 660
SseBI AGGCCT 1 cut(s) 409
SsiI CCGC 1 cut(s) 123
SspMI CTAG 2 cut(s) 510, 645
StuI AGGCCT 1 cut(s) 409
StyD4I CCNGG 2 cut(s) 212, 598
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 526
TaiI ACGT 1 cut(s) 18
TaqI TCGA 4 cut(s) 27, 233, 339, 382
TaqII GACCGA 1 cut(s) 198
TasI AATT 3 cut(s) 82, 541, 660
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 2 cut(s) 271, 584
Tru1I TTAA 2 cut(s) 659, 699
Tru9I TTAA 2 cut(s) 659, 699
TscAI CASTG 3 cut(s) 113, 327, 474
TspDTI ATGAA 4 cut(s) 76, 81, 576, 582
TspRI CASTG 3 cut(s) 113, 327, 474
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 2 cut(s) 82, 541
XbaI TCTAGA 1 cut(s) 509
XceI RCATGY 2 cut(s) 308, 395
XmiI GTMKAC 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 2 cut(s) 510, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.