Prupe.7G194000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013587
Physical Location & Seq
Reverse (-)
18437685 .. 18439298
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G194000.1

Sequence Viewer

Length: 720 bp
ATGGTTTCGGACGACGTCGTAGATAGCTTGGAGAAAGGGTTACTATCCGAAACTGCAAATGAAGCTGAAGATGAAATAGTTCTGTATTCAGCTTCGTTTCAGGAGATGGAGGAGAATTATGTGAAGTACCAAACAGCACAATGGCTTCTTTACTCTTTGCTTTTAATATTGGCATGGGGAATTGGGTTCTTCATGCTGCTTTATTTACCAGTCCGAAGATACATTTTGCGCAAGGATATTCGGTCCAGAAAGCTCTATCTCACTCCCAATGCCATTGTCTACAAGGTTACAAAGCCAGTTCCATTTCCAATTTTTGGGGTGCTGAAGAAAGAAAAGCATGTTTTGTTGCCTTCAGTCGCTGATGTTGTAATTGAGCAAGGATATCTGCAGTCTCTCTATGGTGTCTACTCACTTAGAATAGAGCATGTTGGTGTCAGAAGACCGCCAAGCGATGATGTTCAAATCCATGGCATTGCAAATCCCAGTGCTTTCAGGAAGGCTGTCCTCATGCGCCTGTCAAGCATGACGAATGAGGTTTTCTCTAGACAAGTTTCCACGCTCGAAGACATTCCCAATTTGAGGCTTCAGATGTCCCCGTCAAAGCCCCTCAGGTATGGGGATCTAACACTACTGCAGAAACTTGATGAAGTTGGAAGTTCTGTAAAGAGAGTTCAAACATTACTTGAGGAGCACCCTCCAACATCAGAACCTATAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.3

Weight (kDa)

6.14

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013587)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09130
malus_domestica MD02G1096900.v1.1 MD15G1221700.v1.1
prunus_persica Prupe.7G194000_v2.0.a1
pyrus_communis pycom02g07690 pycom15g19620
rosa_chinensis RchiOBHm_Chr2g0095521
rosa_laevigata RLG00000016575
rosa_multiflora Rmu_sc0002541.1_g000031
rosa_roxburghii Rroxscaffold_2G00146230
rosa_rugosa Rorug02G0052100 Rorug02G0471700
rosa_samantha Rh2AG099900 Rh2BG101300 Rh2CG103500 Rh2DG100800
rosa_wichuraiana Rw2G007580 Rw7G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
Acc16I TGCGCA 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 314
AccI GTMKAC 2 cut(s) 279, 405
AciI CCGC 1 cut(s) 443
AclWI GGATC 1 cut(s) 627
AcuI CTGAAG 4 cut(s) 87, 336, 344, 569
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 314, 579
AgsI TTSAA 2 cut(s) 461, 674
AluBI AGCT 4 cut(s) 27, 65, 92, 253
AluI AGCT 4 cut(s) 27, 65, 92, 253
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 1 cut(s) 627
AlwNI CAGNNNCTG 1 cut(s) 359
ApeKI GCWGC 1 cut(s) 196
Asp700I GAANNNNTTC 2 cut(s) 78, 567
AspLEI GCGC 2 cut(s) 231, 513
AspS9I GGNCC 1 cut(s) 243
AvaII GGWCC 1 cut(s) 243
AxyI CCTNAGG 1 cut(s) 608
BbsI GAAGAC 2 cut(s) 445, 570
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 3 cut(s) 386, 632, 711
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmrI ACTGGG 1 cut(s) 477
BmuI ACTGGG 1 cut(s) 477
BpiI GAAGAC 2 cut(s) 445, 570
BplI GAGNNNNNCTC 2 cut(s) 524, 556
BpuEI CTTGAG 1 cut(s) 704
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 579
Bse1I ACTGG 3 cut(s) 209, 296, 483
Bse21I CCTNAGG 1 cut(s) 608
Bse3DI GCAATG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 466
BseLI CCNNNNNNNGG 2 cut(s) 314, 579
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 622
BseNI ACTGG 3 cut(s) 209, 296, 483
BseRI GAGGAG 2 cut(s) 125, 701
BseXI GCAGC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 693
BslFI GGGAC 1 cut(s) 577
BslI CCNNNNNNNGG 2 cut(s) 314, 579
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 577
Bsp1286I GDGCHC 1 cut(s) 693
Bsp143I GATC 1 cut(s) 619
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 1 cut(s) 443
BspCNI CTCAG 1 cut(s) 621
BspMAI CTGCAG 2 cut(s) 390, 636
BspPI GGATC 1 cut(s) 627
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 3 cut(s) 209, 296, 483
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 1 cut(s) 619
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 466
BstACI GRCGYC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 413, 608
BstDSI CCRYGG 1 cut(s) 466
BstHHI GCGC 2 cut(s) 231, 513
BstKTI GATC 1 cut(s) 622
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 1 cut(s) 619
BstMWI GCNNNNNNNGC 2 cut(s) 62, 519
BstNSI RCATGY 2 cut(s) 341, 428
BstSFI CTRYAG 3 cut(s) 386, 632, 711
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 2 cut(s) 445, 570
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
Bsu36I CCTNAGG 1 cut(s) 608
BtgI CCRYGG 1 cut(s) 466
BtgZI GCGATG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 490
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 2 cut(s) 231, 513
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 127
CviAII CATG 7 cut(s) 174, 193, 338, 425, 467, 508, 523
CviJI RGCY 9 cut(s) 27, 65, 92, 145, 253, 295, 500, 583, 604
CviKI_1 RGCY 9 cut(s) 27, 65, 92, 145, 253, 295, 500, 583, 604
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 413, 608
DpnI GATC 1 cut(s) 621
DpnII GATC 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 466
Eco32I GATATC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 243
Eco57I CTGAAG 4 cut(s) 87, 336, 344, 569
Eco81I CCTNAGG 1 cut(s) 608
EcoRV GATATC 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 466
FaeI CATG 7 cut(s) 177, 196, 341, 428, 470, 511, 526
FaqI GGGAC 1 cut(s) 577
FatI CATG 7 cut(s) 173, 192, 337, 424, 466, 507, 522
FblI GTMKAC 2 cut(s) 279, 405
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 1 cut(s) 543
FspI TGCGCA 1 cut(s) 230
GlaI GCGC 2 cut(s) 230, 512
GluI GCNGC 1 cut(s) 197
HhaI GCGC 2 cut(s) 231, 513
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 7 cut(s) 177, 196, 341, 428, 470, 511, 526
Hin6I GCGC 2 cut(s) 229, 511
HinP1I GCGC 2 cut(s) 229, 511
Hpy166II GTNNAC 2 cut(s) 280, 406
Hpy188I TCNGA 6 cut(s) 10, 49, 215, 437, 588, 706
Hpy188III TCNNGA 4 cut(s) 101, 246, 493, 543
Hpy8I GTNNAC 2 cut(s) 280, 406
Hpy99I CGWCG 2 cut(s) 17, 20
HpyAV CCTTC 2 cut(s) 360, 490
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 56, 388, 476, 634
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 519
HpyF3I CTNAG 2 cut(s) 413, 608
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 7 cut(s) 177, 196, 341, 428, 470, 511, 526
HspAI GCGC 2 cut(s) 229, 511
Kzo9I GATC 1 cut(s) 619
LmnI GCTCC 1 cut(s) 688
LpnPI CCDG 8 cut(s) 86, 222, 259, 309, 478, 496, 527, 595
Lsp1109I GCAGC 1 cut(s) 183
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 39, 286
MalI GATC 1 cut(s) 621
MboI GATC 1 cut(s) 619
MboII GAAGA 6 cut(s) 80, 181, 228, 337, 450, 575
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 5 cut(s) 115, 180, 309, 369, 574
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 7 cut(s) 103, 515, 526, 573, 617, 679, 705
MroXI GAANNNNTTC 2 cut(s) 78, 567
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 62, 519
NcoI CCATGG 1 cut(s) 466
NdeII GATC 1 cut(s) 619
NlaIII CATG 7 cut(s) 177, 196, 341, 428, 470, 511, 526
NsbI TGCGCA 1 cut(s) 230
NspI RCATGY 2 cut(s) 341, 428
PdmI GAANNNNTTC 2 cut(s) 78, 567
PflFI GACNNNGTC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 243
PsrI GAACNNNNNNTAC 2 cut(s) 654, 686
PstI CTGCAG 2 cut(s) 390, 636
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 1 cut(s) 619
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 619
Sau96I GGNCC 1 cut(s) 243
SduI GDGCHC 1 cut(s) 693
SetI ASST 9 cut(s) 18, 29, 67, 94, 255, 288, 537, 614, 712
SfcI CTRYAG 3 cut(s) 386, 632, 711
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 5 cut(s) 115, 180, 309, 369, 574
SsiI CCGC 1 cut(s) 443
SspI AATATT 1 cut(s) 168
SspMI CTAG 1 cut(s) 543
StyI CCWWGG 1 cut(s) 466
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 561
TaqII GACCGA 1 cut(s) 231
TasI AATT 5 cut(s) 115, 180, 309, 369, 574
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 490
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 4 cut(s) 75, 87, 181, 660
TspRI CASTG 1 cut(s) 490
Tth111I GACNNNGTC 1 cut(s) 14
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 243
XbaI TCTAGA 1 cut(s) 542
XceI RCATGY 2 cut(s) 341, 428
XmiI GTMKAC 2 cut(s) 279, 405
XmnI GAANNNNTTC 2 cut(s) 78, 567
XspI CTAG 1 cut(s) 543
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.