FvH4_1g09160

Belongs to the GroES chaperonin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013355
Physical Location & Seq
Reverse (-)
4881045 .. 4884480
3436 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09160.t1

Sequence Viewer

Length: 750 bp
ATGGCCACAGCTCAGCTCACAGCCTCGTCAATCTCAGCCAGGAGCTTGGCCTCGTTCGAAGGGCTGAGACCCTCAAATACCAAGTTCGCGTCAGTGTCACTGGTGAGCCGCCGCTCCTTCCGCGGCCTCGTCGTCAAGGCCGCCACCACCGTCGCTCCCAAGTACACTTCGATTAAGCCTTTAGGTGATAGGGTGCTGGTGAAGATTAACACTGTGGAGGAGAAAAGTACTGGTGGAATTTTGCTTCCAACTACAGCTCAGACAAAGCCTCAGGGAGGTGAAGTGGTTGCTGTTGGGGAGGGCAAAACCATTGGCAAAACTAAAGTGGGGATCAGTGTCCAGACTGGTGCAGAGGTTGTATATTCGAAGTATGCTGGGACAGAGGTGGAGTTCAATGGGACAAAGCATCTTATTTTGAAGGATGATGACATTGTTGGCATCCTTGAGACAGATGATATCAAGGATCTTAAACCCCTGAATGATAGAGTCCTAATCAAGGTTGCTGAGGCTGAGCAAAAGACTGCTGGAGGTTTGTTGCTGACAGAGGCAAGCAAGGAGAAACCCTCCATTGGCGAGGTGATTGCTGTTGGACCCGGTACTGTTGACGAGGAAGGGAACAAGAAACCATTAAGCATCAGCAAGGGGAGCACAGTATTGTACTCCAAGTATGCTGGGAATGACTTCAAGGGCAAAGATGGTTCTGAATACATAGCTTTGAGAGCTTCAGATGTCATTGCCATCCTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009787 GO:0009788 GO:0009893 GO:0009941 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0019222 GO:0022607 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0035966 GO:0042221 GO:0042651 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0051341 GO:0051353 GO:0055035 GO:0061077 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080134 GO:0080135 GO:0090322 GO:1900407 GO:1900409 GO:1901031 GO:1901033 GO:1901419 GO:1901420 GO:1901668 GO:1901671 GO:1902882 GO:1902884 GO:1904833 GO:1905957 GO:1905958 GO:2000121 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cpn10

Protein Analysis

250

Amino Acids

26.14

Weight (kDa)

9.03

Isoelectric Point (pI)

20.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn10 PF00166 58 - 147 2.2e-28 Chaperonin 10 Kd subunit
Cpn10 PF00166 156 - 247 3.3e-29 Chaperonin 10 Kd subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20720 AT5G20720 AT5G20720 AT5G20720
fragaria_vesca FvH4_1g09160
malus_domestica MD02G1096600.v1.1 MD15G1221300.v1.1
prunus_persica Prupe.7G194300_v2.0.a1
pyrus_communis pycom02g07660
rosa_chinensis RchiOBHm_Chr2g0095561
rosa_multiflora Rmu_sc0005382.1_g000006 Rmu_sc0038699.1_g000001
rosa_roxburghii Rroxscaffold_2G00146190
rosa_rugosa Rorug02G0052400
rosa_samantha Rh2BG101700 Rh2CG103800 Rh2DG101100
rosa_wichuraiana Rw2G007610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 114
AccII CGCG 2 cut(s) 89, 123
AciI CCGC 5 cut(s) 109, 112, 121, 123, 141
AclWI GGATC 2 cut(s) 338, 471
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 237
AcuI CTGAAG 1 cut(s) 708
AfaI GTAC 4 cut(s) 164, 229, 598, 659
AfiI CCNNNNNNNGG 3 cut(s) 275, 496, 569
AgsI TTSAA 3 cut(s) 394, 418, 685
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 6 cut(s) 11, 16, 45, 257, 713, 722
AluI AGCT 6 cut(s) 11, 16, 45, 257, 713, 722
Alw21I GWGCWC 1 cut(s) 650
Alw26I GTCTC 2 cut(s) 61, 440
AlwI GGATC 2 cut(s) 338, 471
AoxI GGCC 4 cut(s) 3, 48, 124, 138
ApoI RAATTY 1 cut(s) 237
Asp700I GAANNNNTTC 1 cut(s) 680
AspS9I GGNCC 1 cut(s) 590
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 5 cut(s) 115, 197, 211, 290, 589
AsuII TTCGAA 2 cut(s) 57, 365
AvaII GGWCC 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 270
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 650
BbvCI CCTCAGC 1 cut(s) 504
BccI CCATC 2 cut(s) 689, 746
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 1 cut(s) 40
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 2 cut(s) 61, 440
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 4 cut(s) 109, 112, 124, 141
BlpI GCTNAGC 2 cut(s) 12, 510
BlsI GCNGC 4 cut(s) 110, 113, 125, 142
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 2 cut(s) 40, 594
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 1 cut(s) 592
BmrFI CCNGG 2 cut(s) 40, 594
BmsI GCATC 3 cut(s) 415, 447, 642
BplI GAGNNNNNCTC 2 cut(s) 548, 580
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 504
Bpu1102I GCTNAGC 2 cut(s) 12, 510
Bpu14I TTCGAA 2 cut(s) 57, 365
BpuEI CTTGAG 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 594
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 267, 297
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 496, 569
Bse1I ACTGG 3 cut(s) 105, 235, 349
Bse21I CCTNAGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 732
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 3 cut(s) 427, 438, 738
BseLI CCNNNNNNNGG 3 cut(s) 275, 496, 569
BseMI GCAATG 1 cut(s) 732
BseMII CTCAG 7 cut(s) 26, 48, 56, 272, 284, 495, 501
BseNI ACTGG 3 cut(s) 105, 235, 349
BseRI GAGGAG 1 cut(s) 233
BseYI CCCAGC 2 cut(s) 374, 671
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 2 cut(s) 89, 123
BshFI GGCC 4 cut(s) 5, 50, 126, 140
BsiHKAI GWGCWC 1 cut(s) 650
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 2 cut(s) 391, 412
BslI CCNNNNNNNGG 3 cut(s) 275, 496, 569
BsmAI GTCTC 2 cut(s) 61, 440
BsmFI GGGAC 2 cut(s) 391, 412
BsnI GGCC 4 cut(s) 5, 50, 126, 140
Bso31I GGTCTC 1 cut(s) 61
Bsp119I TTCGAA 2 cut(s) 57, 365
Bsp1286I GDGCHC 1 cut(s) 650
Bsp143I GATC 2 cut(s) 330, 463
Bsp1720I GCTNAGC 2 cut(s) 12, 510
BspACI CCGC 5 cut(s) 109, 112, 121, 123, 141
BspANI GGCC 4 cut(s) 5, 50, 126, 140
BspCNI CTCAG 7 cut(s) 25, 47, 57, 271, 283, 496, 502
BspFNI CGCG 2 cut(s) 89, 123
BspLI GGNNCC 1 cut(s) 592
BspPI GGATC 2 cut(s) 338, 471
BspT104I TTCGAA 2 cut(s) 57, 365
BspTNI GGTCTC 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 732
BsrI ACTGG 3 cut(s) 105, 235, 349
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 2 cut(s) 330, 463
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 4 cut(s) 151, 214, 601, 652
BstBI TTCGAA 2 cut(s) 57, 365
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 8 cut(s) 12, 34, 65, 258, 270, 504, 510, 747
BstDSI CCRYGG 1 cut(s) 121
BstENI CCTNNNNNAGG 2 cut(s) 273, 494
BstF5I GGATG 3 cut(s) 427, 438, 738
BstFNI CGCG 2 cut(s) 89, 123
BstKTI GATC 2 cut(s) 333, 466
BstMAI GTCTC 2 cut(s) 61, 440
BstMBI GATC 2 cut(s) 330, 463
BstMWI GCNNNNNNNGC 3 cut(s) 120, 645, 719
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 38, 592
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 2 cut(s) 89, 123
BstX2I RGATCY 1 cut(s) 463
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 1 cut(s) 463
Bsu36I CCTNAGG 1 cut(s) 270
BsuRI GGCC 4 cut(s) 5, 50, 126, 140
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 3 cut(s) 427, 438, 738
BtsIMutI CAGTG 4 cut(s) 98, 99, 210, 340
Cac8I GCNNGC 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 590
Cfr42I CCGCGG 1 cut(s) 124
CseI GACGC 1 cut(s) 78
Csp6I GTAC 4 cut(s) 163, 228, 597, 658
CviQI GTAC 4 cut(s) 163, 228, 597, 658
DdeI CTNAG 8 cut(s) 12, 34, 65, 258, 270, 504, 510, 747
DpnI GATC 2 cut(s) 332, 465
DpnII GATC 2 cut(s) 330, 463
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 708
Eco81I CCTNAGG 1 cut(s) 270
EcoNI CCTNNNNNAGG 2 cut(s) 273, 494
EcoRII CCWGG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 457
FaiI YATR 4 cut(s) 361, 372, 669, 710
FaqI GGGAC 2 cut(s) 391, 412
Fnu4HI GCNGC 4 cut(s) 109, 112, 124, 141
FokI GGATG 3 cut(s) 425, 434, 725
Fsp4HI GCNGC 4 cut(s) 109, 112, 124, 141
GluI GCNGC 4 cut(s) 109, 112, 124, 141
GsaI CCCAGC 2 cut(s) 378, 675
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 4 cut(s) 5, 50, 126, 140
HapII CCGG 1 cut(s) 594
HgaI GACGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 1 cut(s) 486
HpaII CCGG 1 cut(s) 594
HphI GGTGA 5 cut(s) 115, 197, 211, 290, 589
Hpy166II GTNNAC 2 cut(s) 165, 604
Hpy188I TCNGA 3 cut(s) 261, 703, 727
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 2 cut(s) 165, 604
Hpy99I CGWCG 2 cut(s) 134, 155
HpyAV CCTTC 4 cut(s) 53, 127, 412, 605
HpyCH4III ACNGT 4 cut(s) 151, 214, 601, 652
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 645, 719
HpyF3I CTNAG 8 cut(s) 12, 34, 65, 258, 270, 504, 510, 747
KspI CCGCGG 1 cut(s) 124
Kzo9I GATC 2 cut(s) 330, 463
LmnI GCTCC 4 cut(s) 42, 119, 160, 645
LweI GCATC 3 cut(s) 415, 447, 642
MaeIII GTNAC 1 cut(s) 96
MalI GATC 2 cut(s) 332, 465
MbiI CCGCTC 1 cut(s) 114
MboI GATC 2 cut(s) 330, 463
MboII GAAGA 1 cut(s) 214
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 650
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 2 cut(s) 272, 568
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 680
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 174, 207, 468, 629
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 2 cut(s) 40, 594
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 2 cut(s) 89, 123
MwoI GCNNNNNNNGC 3 cut(s) 120, 645, 719
NciI CCSGG 1 cut(s) 594
NdeII GATC 2 cut(s) 330, 463
NlaIV GGNNCC 1 cut(s) 592
NmuCI GTSAC 1 cut(s) 96
NspV TTCGAA 2 cut(s) 57, 365
PdmI GAANNNNTTC 1 cut(s) 680
PkrI GCNGC 4 cut(s) 110, 113, 125, 142
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 38
PspFI CCCAGC 2 cut(s) 374, 671
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 592
PspPI GGNCC 1 cut(s) 590
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 4 cut(s) 164, 229, 598, 659
RsaNI GTAC 4 cut(s) 163, 228, 597, 658
SacII CCGCGG 1 cut(s) 124
SaqAI TTAA 4 cut(s) 174, 207, 468, 629
SatI GCNGC 4 cut(s) 109, 112, 124, 141
Sau3AI GATC 2 cut(s) 330, 463
Sau96I GGNCC 1 cut(s) 590
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 2 cut(s) 40, 594
SduI GDGCHC 1 cut(s) 650
SfaNI GCATC 3 cut(s) 415, 447, 642
SfcI CTRYAG 1 cut(s) 252
Sfr303I CCGCGG 1 cut(s) 124
SfuI TTCGAA 2 cut(s) 57, 365
SgrBI CCGCGG 1 cut(s) 124
SinI GGWCC 1 cut(s) 590
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 1 cut(s) 237
SsiI CCGC 5 cut(s) 109, 112, 121, 123, 141
StyD4I CCNGG 2 cut(s) 38, 592
TaaI ACNGT 4 cut(s) 151, 214, 601, 652
TaqI TCGA 3 cut(s) 57, 170, 365
TasI AATT 1 cut(s) 237
TatI WGTACW 3 cut(s) 162, 227, 657
TauI GCSGC 4 cut(s) 111, 114, 126, 143
Tru1I TTAA 4 cut(s) 174, 207, 468, 629
Tru9I TTAA 4 cut(s) 174, 207, 468, 629
TscAI CASTG 4 cut(s) 99, 105, 217, 340
TseFI GTSAC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 96
TspRI CASTG 4 cut(s) 99, 105, 217, 340
VpaK11BI GGWCC 1 cut(s) 590
XagI CCTNNNNNAGG 2 cut(s) 273, 494
XapI RAATTY 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 680
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.