Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013355

Physical Location & Seq

Genomic Coordinates Forward (+)

84143367 .. 84145732

Gene Structure 2366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCCACAGCTCAGCTAACAGCCTCATCTATCTCGGCCAGGAGCTTGGCCTCATTTGAAGGGCTTAGACCCTCCAACAGCAAGTTTGGGTCTCCAGCTGCAGTGTCACTGGTGGGCCACCGCTCCTTCCGCGGCCTAGTCGTCAAGGCCGCCACCACCGTTGCTCCCAAGGGTGTTGTCATTCCAATTCTGCAGTACACTTCGATTAAGCCTTTGGGTGACAGAGTGCTTGTGAAGATTAACACCGTGGAGGAGAAAACTGGTGGTGGAATTTTGCTTCCAACCACAGCTCAGACAAAGCCTCAAGGAGGTGAAGTGGTTGCTGTTGGAGAGGGCAAAACCATTGGCAAAACAAAAGTGGGGATCAGTGTCCAGACTGGTGCAGAAGTTGTGTATTCCAAGTATGCTGGGACAGAGGTGGAGTTCAATGGTACAAAGCATCTTATTTTGAAGGATGATGACATCGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTTAAACCGCTGAATGATAGAGTCCTTATCAAGGTTGCTGAGGCTGAGCAAAAGACCGCTGGAGGTTTGTTGTTGACAGAGGCCAGCAAAGAGAAACCCTCCATTGGCGAGGTAAGGGTGATTGCTGTTGGACCCGGTACTCTTGATGAGGAAGGGAACAGGAAACCATTAAGCATCAGCAAGGGGAGCACAGTTTTGTACTCCAAGTATGCAGGGAATGACTTCAAGGGCAAAGATGGTTCTGAATACATAGCTTTGAGGGCTTCAGATGTCATTGCCATCCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009787 GO:0009788 GO:0009893 GO:0009941 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0019222 GO:0022607 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0035966 GO:0042221 GO:0042651 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0051341 GO:0051353 GO:0055035 GO:0061077 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080134 GO:0080135 GO:0090322 GO:1900407 GO:1900409 GO:1901031 GO:1901033 GO:1901419 GO:1901420 GO:1901668 GO:1901671 GO:1902882 GO:1902884 GO:1904833 GO:1905957 GO:1905958 GO:2000121 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

262

Amino Acids

27.37

Weight (kDa)

9.05

Isoelectric Point (pI)

20.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	69 - 158	1.8e-28	Chaperonin 10 Kd subunit
Cpn10	PF00166	167 - 260	1.2e-26	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20720 AT5G20720 AT5G20720 AT5G20720
fragaria_vesca	FvH4_1g09160
malus_domestica	MD02G1096600.v1.1 MD15G1221300.v1.1
prunus_persica	Prupe.7G194300_v2.0.a1
pyrus_communis	pycom02g07660
rosa_chinensis	RchiOBHm_Chr2g0095561
rosa_multiflora	Rmu_sc0005382.1_g000006 Rmu_sc0038699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146190
rosa_rugosa	Rorug02G0052400
rosa_samantha	Rh2BG101700 Rh2CG103800 Rh2DG101100
rosa_wichuraiana	Rw2G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	1 cut(s)	132
AciI	CCGC	6 cut(s)	121, 130, 132, 150, 506, 555
AclWI	GGATC	2 cut(s)	371, 504
AcoI	YGGCCR	2 cut(s)	3, 36
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	4 cut(s)	197, 433, 637, 698
AfiI	CCNNNNNNNGG	3 cut(s)	308, 529, 602
AgsI	TTSAA	4 cut(s)	59, 427, 451, 724
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	6 cut(s)	11, 16, 45, 98, 290, 752
AluI	AGCT	6 cut(s)	11, 16, 45, 98, 290, 752
Alw21I	GWGCWC	1 cut(s)	689
Alw26I	GTCTC	2 cut(s)	96, 473
AlwI	GGATC	2 cut(s)	371, 504
AoxI	GGCC	7 cut(s)	3, 36, 48, 115, 133, 147, 579
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	719
AspS9I	GGNCC	2 cut(s)	115, 629
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	3 cut(s)	230, 323, 628
AvaII	GGWCC	1 cut(s)	629
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	689
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	728, 785
BciT130I	CCWGG	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	2 cut(s)	96, 473
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	99, 191
BisI	GCNGC	3 cut(s)	99, 133, 150
BlpI	GCTNAGC	2 cut(s)	12, 543
BlsI	GCNGC	3 cut(s)	100, 134, 151
Bme1390I	CCNGG	2 cut(s)	40, 633
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	115, 629
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	2 cut(s)	40, 633
BmsI	GCATC	2 cut(s)	448, 681
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpmI	CTGGAG	2 cut(s)	78, 579
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu1102I	GCTNAGC	2 cut(s)	12, 543
BpuEI	CTTGAG	2 cut(s)	288, 497
BpuMI	CCSGG	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	130, 168, 246
BsaXI	ACNNNNNCTCC	4 cut(s)	148, 178, 300, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 529, 602
Bse1I	ACTGG	3 cut(s)	114, 265, 382
Bse3DI	GCAATG	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	3 cut(s)	130, 168, 246
BseGI	GGATG	2 cut(s)	460, 777
BseLI	CCNNNNNNNGG	3 cut(s)	308, 529, 602
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	4 cut(s)	26, 305, 528, 534
BseNI	ACTGG	3 cut(s)	114, 265, 382
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	7 cut(s)	5, 38, 50, 117, 135, 149, 581
BsiHKAI	GWGCWC	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	3 cut(s)	308, 529, 602
BsmAI	GTCTC	2 cut(s)	96, 473
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	7 cut(s)	5, 38, 50, 117, 135, 149, 581
Bso31I	GGTCTC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	2 cut(s)	363, 496
Bsp1720I	GCTNAGC	2 cut(s)	12, 543
BspACI	CCGC	6 cut(s)	121, 130, 132, 150, 506, 555
BspANI	GGCC	7 cut(s)	5, 38, 50, 117, 135, 149, 581
BspCNI	CTCAG	4 cut(s)	25, 304, 529, 535
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	631
BspMAI	CTGCAG	2 cut(s)	103, 195
BspPI	GGATC	2 cut(s)	371, 504
BspTNI	GGTCTC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	771
BsrI	ACTGG	3 cut(s)	114, 265, 382
BssECI	CCNNGG	3 cut(s)	130, 168, 246
BssMI	GATC	2 cut(s)	363, 496
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	3 cut(s)	160, 247, 691
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	6 cut(s)	12, 65, 291, 537, 543, 786
BstDSI	CCRYGG	2 cut(s)	130, 246
BstENI	CCTNNNNNAGG	2 cut(s)	306, 527
BstF5I	GGATG	2 cut(s)	460, 777
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	366, 499
BstMAI	GTCTC	2 cut(s)	96, 473
BstMBI	GATC	2 cut(s)	363, 496
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 684, 758
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	38, 631
BstSFI	CTRYAG	2 cut(s)	99, 191
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	7 cut(s)	5, 38, 50, 117, 135, 149, 581
BtgI	CCRYGG	2 cut(s)	130, 246
BtsCI	GGATG	2 cut(s)	460, 777
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	107, 108, 373
Cac8I	GCNNGC	1 cut(s)	583
Cfr13I	GGNCC	2 cut(s)	115, 629
Cfr42I	CCGCGG	1 cut(s)	133
Csp6I	GTAC	4 cut(s)	196, 432, 636, 697
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviQI	GTAC	4 cut(s)	196, 432, 636, 697
DdeI	CTNAG	6 cut(s)	12, 65, 291, 537, 543, 786
DpnI	GATC	2 cut(s)	365, 498
DpnII	GATC	2 cut(s)	363, 496
EaeI	YGGCCR	2 cut(s)	3, 36
Eco130I	CCWWGG	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	747
EcoNI	CCTNNNNNAGG	2 cut(s)	306, 527
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaiI	YATR	3 cut(s)	405, 708, 749
FaqI	GGGAC	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	99, 133, 150
FokI	GGATG	2 cut(s)	467, 764
Fsp4HI	GCNGC	3 cut(s)	99, 133, 150
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	3 cut(s)	99, 133, 150
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	2 cut(s)	78, 579
HaeIII	GGCC	7 cut(s)	5, 38, 50, 117, 135, 149, 581
HapII	CCGG	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HinfI	GANTC	1 cut(s)	519
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	3 cut(s)	230, 323, 628
Hpy166II	GTNNAC	2 cut(s)	198, 573
Hpy188I	TCNGA	3 cut(s)	294, 742, 766
Hpy188III	TCNNGA	3 cut(s)	373, 476, 641
Hpy8I	GTNNAC	2 cut(s)	198, 573
HpyAV	CCTTC	4 cut(s)	53, 136, 445, 644
HpyCH4III	ACNGT	3 cut(s)	160, 247, 691
HpyCH4V	TGCA	4 cut(s)	101, 193, 383, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 684, 758
HpyF3I	CTNAG	6 cut(s)	12, 65, 291, 537, 543, 786
KspI	CCGCGG	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	363, 496
LmnI	GCTCC	4 cut(s)	42, 128, 169, 684
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	448, 681
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	105, 218
MalI	GATC	2 cut(s)	365, 498
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	2 cut(s)	363, 496
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	689
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	186, 270
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	528
MmeI	TCCRAC	4 cut(s)	99, 305, 307, 607
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	207, 240, 501, 668
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	4 cut(s)	98, 132, 508, 557
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	2 cut(s)	40, 633
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	129, 684, 758
NciI	CCSGG	1 cut(s)	633
NdeII	GATC	2 cut(s)	363, 496
NlaIV	GGNNCC	1 cut(s)	631
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	105, 218
PdmI	GAANNNNTTC	1 cut(s)	719
PkrI	GCNGC	3 cut(s)	100, 134, 151
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	2 cut(s)	115, 629
PstI	CTGCAG	2 cut(s)	103, 195
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	4 cut(s)	197, 433, 637, 698
RsaNI	GTAC	4 cut(s)	196, 432, 636, 697
SacII	CCGCGG	1 cut(s)	133
SaqAI	TTAA	4 cut(s)	207, 240, 501, 668
SatI	GCNGC	3 cut(s)	99, 133, 150
Sau3AI	GATC	2 cut(s)	363, 496
Sau96I	GGNCC	2 cut(s)	115, 629
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	2 cut(s)	40, 633
SduI	GDGCHC	1 cut(s)	689
SfaNI	GCATC	2 cut(s)	448, 681
SfcI	CTRYAG	2 cut(s)	99, 191
Sfr303I	CCGCGG	1 cut(s)	133
SgrBI	CCGCGG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	303, 476
SmoI	CTYRAG	2 cut(s)	303, 476
Sse9I	AATT	2 cut(s)	186, 270
SsiI	CCGC	6 cut(s)	121, 130, 132, 150, 506, 555
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	38, 631
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	160, 247, 691
TaqI	TCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	186, 270
TatI	WGTACW	2 cut(s)	195, 696
TauI	GCSGC	2 cut(s)	135, 152
Tru1I	TTAA	4 cut(s)	207, 240, 501, 668
Tru9I	TTAA	4 cut(s)	207, 240, 501, 668
TscAI	CASTG	3 cut(s)	108, 114, 373
TseFI	GTSAC	2 cut(s)	105, 218
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	2 cut(s)	105, 218
TspRI	CASTG	3 cut(s)	108, 114, 373
VpaK11BI	GGWCC	1 cut(s)	629
XagI	CCTNNNNNAGG	2 cut(s)	306, 527
XapI	RAATTY	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.