Rorug02G0052400

Belongs to the GroES chaperonin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013355
Physical Location & Seq
Reverse (-)
4009958 .. 4010634
677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0052400.1

Sequence Viewer

Length: 435 bp
ATGCCGAACCGATTCGCCGGAGCTCTGACTCAGGACTGGGAGCCGGTGGTGATCCACAAGGCCAAGCCAAAGCCGCAAGACCTCCGCAAGCCCAAGGTGGTGAACCAGGCCCTCCGGACCGGCGCGCCGGTCCAGACGATCAAGAAGTCCGACGCCGGCCATAACAAGAAGGCGGCTCCGGCCGTGAGCGTGAAGAAGCTGGACGAGGCGGCCGAGCCGGCGGCGCTGGACCGGGTCTCGGCGGATGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAGGTCGACCTAGCCAAGCGGATCAACGAGCTTCCTAAGGTGGTTCAGGAGTACGAGAACGGGAAGGCCGTGCCGAACCAGGCGGTCCTGGCGAAGATGGAGAGGGCTCTGGAGGTCAAGCTTAGGGGCAAAGTCGGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009787 GO:0009788 GO:0009893 GO:0009941 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0019222 GO:0022607 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0035966 GO:0042221 GO:0042651 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0051341 GO:0051353 GO:0055035 GO:0061077 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080134 GO:0080135 GO:0090322 GO:1900407 GO:1900409 GO:1901031 GO:1901033 GO:1901419 GO:1901420 GO:1901668 GO:1901671 GO:1902882 GO:1902884 GO:1904833 GO:1905957 GO:1905958 GO:2000121 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cpn10

Protein Analysis

144

Amino Acids

15.84

Weight (kDa)

10.15

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBF1 PF08523 11 - 79 3.9e-19 Multiprotein bridging factor 1
HTH_3 PF01381 87 - 139 3.8e-11 Helix-turn-helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20720 AT5G20720 AT5G20720 AT5G20720
fragaria_vesca FvH4_1g09160
malus_domestica MD02G1096600.v1.1 MD15G1221300.v1.1
prunus_persica Prupe.7G194300_v2.0.a1
pyrus_communis pycom02g07660
rosa_chinensis RchiOBHm_Chr2g0095561
rosa_multiflora Rmu_sc0005382.1_g000006 Rmu_sc0038699.1_g000001
rosa_roxburghii Rroxscaffold_2G00146190
rosa_rugosa Rorug02G0052400
rosa_samantha Rh2BG101700 Rh2CG103800 Rh2DG101100
rosa_wichuraiana Rw2G007610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 297
AccII CGCG 2 cut(s) 125, 271
AccIII TCCGGA 1 cut(s) 114
AciI CCGC 9 cut(s) 74, 85, 173, 209, 221, 242, 271, 310, 374
AclWI GGATC 2 cut(s) 46, 320
AcoI YGGCCR 3 cut(s) 157, 180, 210
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 238
AjnI CCWGG 4 cut(s) 105, 291, 369, 378
AluBI AGCT 4 cut(s) 23, 199, 322, 412
AluI AGCT 4 cut(s) 23, 199, 322, 412
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 2 cut(s) 46, 320
Aor13HI TCCGGA 1 cut(s) 114
AoxI GGCC 6 cut(s) 60, 108, 157, 180, 210, 357
AscI GGCGCGCC 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 4 cut(s) 125, 127, 226, 271
AspS9I GGNCC 5 cut(s) 109, 117, 130, 229, 376
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 61, 112
AvaII GGWCC 4 cut(s) 117, 130, 229, 376
AxyI CCTNAGG 1 cut(s) 327
BanII GRGCYC 2 cut(s) 25, 400
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 1 cut(s) 382
BceAI ACGGC 2 cut(s) 167, 344
BciT130I CCWGG 4 cut(s) 107, 293, 371, 380
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 227
BglI GCCNNNNNGGC 1 cut(s) 218
BisI GCNGC 5 cut(s) 74, 174, 210, 222, 272
BlsI GCNGC 5 cut(s) 75, 175, 211, 223, 273
Bme1390I CCNGG 5 cut(s) 107, 233, 293, 371, 380
Bme18I GGWCC 4 cut(s) 117, 130, 229, 376
BmgT120I GGNCC 5 cut(s) 109, 117, 130, 229, 376
BmiI GGNNCC 2 cut(s) 42, 177
BmrFI CCNGG 5 cut(s) 107, 233, 293, 371, 380
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BpmI CTGGAG 2 cut(s) 296, 422
Bpu10I CCTNAGC 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse118I RCCGGY 5 cut(s) 43, 119, 127, 155, 217
Bse1I ACTGG 1 cut(s) 41
Bse21I CCTNAGG 1 cut(s) 327
BseAI TCCGGA 1 cut(s) 114
BseBI CCWGG 4 cut(s) 107, 293, 371, 380
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 41
BsePI GCGCGC 1 cut(s) 123
BseX3I CGGCCG 2 cut(s) 180, 210
Bsh1236I CGCG 2 cut(s) 125, 271
Bsh1285I CGRYCG 2 cut(s) 183, 213
BshFI GGCC 6 cut(s) 62, 110, 159, 182, 212, 359
BsiEI CGRYCG 2 cut(s) 183, 213
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 9 cut(s) 18, 44, 115, 120, 128, 156, 179, 218, 232
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 241
BsnI GGCC 6 cut(s) 62, 110, 159, 182, 212, 359
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 2 cut(s) 25, 400
Bsp13I TCCGGA 1 cut(s) 114
Bsp143I GATC 3 cut(s) 51, 138, 312
BspACI CCGC 9 cut(s) 74, 85, 173, 209, 221, 242, 271, 310, 374
BspANI GGCC 6 cut(s) 62, 110, 159, 182, 212, 359
BspCNI CTCAG 1 cut(s) 43
BspEI TCCGGA 1 cut(s) 114
BspFNI CGCG 2 cut(s) 125, 271
BspLI GGNNCC 2 cut(s) 42, 177
BspPI GGATC 2 cut(s) 46, 320
BspTNI GGTCTC 1 cut(s) 241
BsrFI RCCGGY 5 cut(s) 43, 119, 127, 155, 217
BsrI ACTGG 1 cut(s) 41
BssAI RCCGGY 5 cut(s) 43, 119, 127, 155, 217
BssECI CCNNGG 1 cut(s) 93
BssHII GCGCGC 1 cut(s) 123
BssMI GATC 3 cut(s) 51, 138, 312
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 4 cut(s) 107, 293, 371, 380
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 5 cut(s) 89, 125, 157, 219, 255
BstDEI CTNAG 3 cut(s) 30, 327, 413
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 2 cut(s) 125, 271
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 4 cut(s) 125, 127, 226, 271
BstKTI GATC 3 cut(s) 54, 141, 315
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 3 cut(s) 51, 138, 312
BstMCI CGRYCG 2 cut(s) 183, 213
BstMWI GCNNNNNNNGC 6 cut(s) 73, 179, 218, 223, 380, 426
BstNI CCWGG 4 cut(s) 107, 293, 371, 380
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 5 cut(s) 105, 231, 291, 369, 378
BstUI CGCG 2 cut(s) 125, 271
BstZI CGGCCG 2 cut(s) 180, 210
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 6 cut(s) 62, 110, 159, 182, 212, 359
BtsCI GGATG 1 cut(s) 250
Cac8I GCNNGC 5 cut(s) 89, 125, 157, 219, 255
CfoI GCGC 4 cut(s) 125, 127, 226, 271
Cfr10I RCCGGY 5 cut(s) 43, 119, 127, 155, 217
Cfr13I GGNCC 5 cut(s) 109, 117, 130, 229, 376
CpoI CGGWCCG 1 cut(s) 117
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 343
CspI CGGWCCG 1 cut(s) 117
CviAII CATG 1 cut(s) 254
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 3 cut(s) 30, 327, 413
DpnI GATC 3 cut(s) 53, 140, 314
DpnII GATC 3 cut(s) 51, 138, 312
EaeI YGGCCR 3 cut(s) 157, 180, 210
EagI CGGCCG 2 cut(s) 180, 210
EciI GGCGGA 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 23
EclXI CGGCCG 2 cut(s) 180, 210
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 2 cut(s) 25, 400
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 4 cut(s) 117, 130, 229, 376
Eco52I CGGCCG 2 cut(s) 180, 210
Eco53kI GAGCTC 1 cut(s) 23
Eco81I CCTNAGG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 4 cut(s) 105, 291, 369, 378
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 2 cut(s) 25, 400
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 257
FaiI YATR 2 cut(s) 162, 255
FatI CATG 1 cut(s) 253
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 5 cut(s) 74, 174, 210, 222, 272
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 2 cut(s) 25, 400
Fsp4HI GCNGC 5 cut(s) 74, 174, 210, 222, 272
FspBI CTAG 1 cut(s) 302
GlaI GCGC 4 cut(s) 124, 126, 225, 270
GluI GCNGC 5 cut(s) 74, 174, 210, 222, 272
GsuI CTGGAG 2 cut(s) 296, 422
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 6 cut(s) 62, 110, 159, 182, 212, 359
HapII CCGG 9 cut(s) 18, 44, 115, 120, 128, 156, 179, 218, 232
HgaI GACGC 1 cut(s) 161
HhaI GCGC 4 cut(s) 125, 127, 226, 271
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 4 cut(s) 123, 125, 224, 269
HinP1I GCGC 4 cut(s) 123, 125, 224, 269
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 3 cut(s) 12, 28, 259
HpaII CCGG 9 cut(s) 18, 44, 115, 120, 128, 156, 179, 218, 232
HphI GGTGA 2 cut(s) 61, 112
Hpy166II GTNNAC 2 cut(s) 103, 298
Hpy188I TCNGA 3 cut(s) 27, 151, 264
Hpy188III TCNNGA 6 cut(s) 32, 115, 133, 142, 338, 401
Hpy8I GTNNAC 2 cut(s) 103, 298
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 163, 259, 349
HpyF10VI GCNNNNNNNGC 6 cut(s) 73, 179, 218, 223, 380, 426
HpyF3I CTNAG 3 cut(s) 30, 327, 413
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 4 cut(s) 123, 125, 224, 269
Kpn2I TCCGGA 1 cut(s) 114
KroI GCCGGC 2 cut(s) 155, 217
KroNI GCCGGC 2 cut(s) 157, 219
Kzo9I GATC 3 cut(s) 51, 138, 312
LmnI GCTCC 3 cut(s) 20, 40, 181
MaeI CTAG 1 cut(s) 302
MalI GATC 3 cut(s) 53, 140, 314
MboI GATC 3 cut(s) 51, 138, 312
MboII GAAGA 4 cut(s) 205, 292, 295, 397
MhlI GDGCHC 2 cut(s) 25, 400
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 6 cut(s) 92, 122, 199, 243, 387, 397
MroI TCCGGA 1 cut(s) 114
MroNI GCCGGC 2 cut(s) 155, 217
MroXI GAANNNNTTC 1 cut(s) 11
MspI CCGG 9 cut(s) 18, 44, 115, 120, 128, 156, 179, 218, 232
MspR9I CCNGG 5 cut(s) 107, 233, 293, 371, 380
MvaI CCWGG 4 cut(s) 107, 293, 371, 380
MvnI CGCG 2 cut(s) 125, 271
MwoI GCNNNNNNNGC 6 cut(s) 73, 179, 218, 223, 380, 426
NaeI GCCGGC 2 cut(s) 157, 219
NciI CCSGG 1 cut(s) 233
NdeII GATC 3 cut(s) 51, 138, 312
NgoMIV GCCGGC 2 cut(s) 155, 217
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 2 cut(s) 42, 177
NmeAIII GCCGAG 2 cut(s) 218, 238
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PalAI GGCGCGCC 1 cut(s) 123
PauI GCGCGC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 357
PdiI GCCGGC 2 cut(s) 157, 219
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 12, 259
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 5 cut(s) 75, 175, 211, 223, 273
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 4 cut(s) 105, 291, 369, 378
PspGI CCWGG 4 cut(s) 105, 291, 369, 378
PspN4I GGNNCC 2 cut(s) 42, 177
PspPI GGNCC 5 cut(s) 109, 117, 130, 229, 376
PsyI GACNNNGTC 1 cut(s) 233
PteI GCGCGC 1 cut(s) 123
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
Rsr2I CGGWCCG 1 cut(s) 117
RsrII CGGWCCG 1 cut(s) 117
SacI GAGCTC 1 cut(s) 25
SalI GTCGAC 1 cut(s) 296
SatI GCNGC 5 cut(s) 74, 174, 210, 222, 272
Sau3AI GATC 3 cut(s) 51, 138, 312
Sau96I GGNCC 5 cut(s) 109, 117, 130, 229, 376
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 5 cut(s) 107, 233, 293, 371, 380
SduI GDGCHC 2 cut(s) 25, 400
SgsI GGCGCGCC 1 cut(s) 123
SinI GGWCC 4 cut(s) 117, 130, 229, 376
SphI GCATGC 1 cut(s) 257
SsiI CCGC 9 cut(s) 74, 85, 173, 209, 221, 242, 271, 310, 374
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 5 cut(s) 105, 231, 291, 369, 378
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 1 cut(s) 297
TauI GCSGC 5 cut(s) 76, 176, 212, 224, 274
TfiI GAWTC 2 cut(s) 12, 259
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 4 cut(s) 117, 130, 229, 376
XceI RCATGY 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.