Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013355

Physical Location & Seq

Genomic Coordinates Reverse (-)

8135068 .. 8137618

Gene Structure 2551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG101100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGATGATGATACATGGAAATCATCTACGGTTTTATCTTCTTCTTCTTCACTCTACAAAGCCACTAGAGCTCCTCCTCCTCTCTTGTCCTCAAAATTCATTAGAGAAATGGCCACAGCTCAGCTAACAGCCTCATCTATCTCGGCCAGGAGCTTGGCCTCATTTGAAGGGCTTAGACCCTCAAACAGCAAGTTTGGGTCTCCAGCTGCAGTGTCACTGGTGGCCCACCGCTCCTTCCGCGGCCTAGTCGTCAAGGCCGCCACCACCGTTGCTCCCAAGTACACTTCGATTAAGCCTTTGGGTGACAGAGTGCTTGTGAAGATCAACACCATGGAGGAGAAAACTGGTGGTGGAATTTTGCTTCCAACCACAGCTCAGACAAAGCCTCAAGGAGGTGAAGTGGTTGCTGTCGGAGAGGGCAAAACCATTGGCAAAACAAAAGTGGGGATCAGTGTCCAGACTGGTGCAGAAGTTGTATATTCCAAGTATGCTGGGACAGAAGTGGAGTTCAATGGTACAAAGCATCTTATTTTGAAGGATGATGACATCGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTTAAACCCCTGAATGATAGAGTCCTAATCAAGGTTGCTGAGGCTGAGCAAAAGACTGCTGGAGGTTTGTTGTTGACAGAGGCCAGCAAAGAGAAACCCTCCATTGGCGAGGTGATTGCTGTTGGACCCGGTACTCTTGACGAGGAAGGGAACAGGAAACCATTAAGCATCAGCAAGGGGAGCACAGTTTTGTACTCCAAGTATGCAGGGAATGACTTCAAGGGCAAAGATGGTTCTGAATACATAGCTTTGAGGGCTTCAGATGTCATTGCCATCCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009787 GO:0009788 GO:0009893 GO:0009941 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0019222 GO:0022607 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0035966 GO:0042221 GO:0042651 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0051341 GO:0051353 GO:0055035 GO:0061077 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080134 GO:0080135 GO:0090322 GO:1900407 GO:1900409 GO:1901031 GO:1901033 GO:1901419 GO:1901420 GO:1901668 GO:1901671 GO:1902882 GO:1902884 GO:1904833 GO:1905957 GO:1905958 GO:2000121 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

288

Amino Acids

30.33

Weight (kDa)

8.99

Isoelectric Point (pI)

23.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	97 - 186	2.2e-28	Chaperonin 10 Kd subunit
Cpn10	PF00166	195 - 286	6.7e-29	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20720 AT5G20720 AT5G20720 AT5G20720
fragaria_vesca	FvH4_1g09160
malus_domestica	MD02G1096600.v1.1 MD15G1221300.v1.1
prunus_persica	Prupe.7G194300_v2.0.a1
pyrus_communis	pycom02g07660
rosa_chinensis	RchiOBHm_Chr2g0095561
rosa_multiflora	Rmu_sc0005382.1_g000006 Rmu_sc0038699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146190
rosa_rugosa	Rorug02G0052400
rosa_samantha	Rh2BG101700 Rh2CG103800 Rh2DG101100
rosa_wichuraiana	Rw2G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	231
AccII	CGCG	1 cut(s)	240
AciI	CCGC	4 cut(s)	229, 238, 240, 258
AclWI	GGATC	2 cut(s)	455, 588
AcoI	YGGCCR	2 cut(s)	111, 144
AcsI	RAATTY	2 cut(s)	95, 354
AcuI	CTGAAG	1 cut(s)	825
AfaI	GTAC	4 cut(s)	281, 517, 715, 776
AfiI	CCNNNNNNNGG	3 cut(s)	392, 613, 686
AgsI	TTSAA	4 cut(s)	167, 511, 535, 802
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	7 cut(s)	71, 119, 124, 153, 206, 374, 830
AluI	AGCT	7 cut(s)	71, 119, 124, 153, 206, 374, 830
Alw21I	GWGCWC	2 cut(s)	73, 767
Alw26I	GTCTC	2 cut(s)	204, 557
AlwI	GGATC	2 cut(s)	455, 588
AoxI	GGCC	7 cut(s)	111, 144, 156, 222, 241, 255, 663
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	2 cut(s)	95, 354
Asp700I	GAANNNNTTC	1 cut(s)	797
AspS9I	GGNCC	2 cut(s)	223, 707
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	3 cut(s)	314, 407, 706
AvaII	GGWCC	1 cut(s)	707
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	2 cut(s)	73, 767
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	806, 863
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BciT130I	CCWGG	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	711
BcoDI	GTCTC	2 cut(s)	204, 557
BfaI	CTAG	2 cut(s)	66, 245
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	3 cut(s)	207, 241, 258
BlpI	GCTNAGC	2 cut(s)	120, 627
BlsI	GCNGC	3 cut(s)	208, 242, 259
Bme1390I	CCNGG	2 cut(s)	148, 711
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	223, 707
BmiI	GGNNCC	1 cut(s)	709
BmrFI	CCNGG	2 cut(s)	148, 711
BmsI	GCATC	2 cut(s)	532, 759
BplI	GAGNNNNNCTC	2 cut(s)	665, 697
BpmI	CTGGAG	2 cut(s)	186, 663
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu1102I	GCTNAGC	2 cut(s)	120, 627
BpuEI	CTTGAG	2 cut(s)	372, 581
BpuMI	CCSGG	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	238, 330
BsaXI	ACNNNNNCTCC	6 cut(s)	55, 85, 256, 286, 384, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 613, 686
Bse1I	ACTGG	3 cut(s)	222, 349, 466
Bse3DI	GCAATG	1 cut(s)	849
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	238, 330
BseGI	GGATG	3 cut(s)	10, 544, 855
BseLI	CCNNNNNNNGG	3 cut(s)	392, 613, 686
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	4 cut(s)	134, 389, 612, 618
BseNI	ACTGG	3 cut(s)	222, 349, 466
BseRI	GAGGAG	4 cut(s)	63, 66, 69, 350
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	491
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	7 cut(s)	113, 146, 158, 224, 243, 257, 665
BsiHKAI	GWGCWC	2 cut(s)	73, 767
BsiSI	CCGG	1 cut(s)	711
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	3 cut(s)	392, 613, 686
BsmAI	GTCTC	2 cut(s)	204, 557
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	7 cut(s)	113, 146, 158, 224, 243, 257, 665
Bso31I	GGTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	2 cut(s)	73, 767
Bsp143I	GATC	3 cut(s)	321, 447, 580
Bsp1720I	GCTNAGC	2 cut(s)	120, 627
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	4 cut(s)	229, 238, 240, 258
BspANI	GGCC	7 cut(s)	113, 146, 158, 224, 243, 257, 665
BspCNI	CTCAG	4 cut(s)	133, 388, 613, 619
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	709
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	2 cut(s)	455, 588
BspTNI	GGTCTC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	849
BsrI	ACTGG	3 cut(s)	222, 349, 466
BssECI	CCNNGG	2 cut(s)	238, 330
BssMI	GATC	3 cut(s)	321, 447, 580
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	31, 268, 769
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	6 cut(s)	120, 173, 375, 621, 627, 864
BstDSI	CCRYGG	2 cut(s)	238, 330
BstENI	CCTNNNNNAGG	2 cut(s)	390, 611
BstF5I	GGATG	3 cut(s)	10, 544, 855
BstFNI	CGCG	1 cut(s)	240
BstKTI	GATC	3 cut(s)	324, 450, 583
BstMAI	GTCTC	2 cut(s)	204, 557
BstMBI	GATC	3 cut(s)	321, 447, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 237, 762, 836
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	2 cut(s)	146, 709
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	580
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	7 cut(s)	113, 146, 158, 224, 243, 257, 665
BtgI	CCRYGG	2 cut(s)	238, 330
BtsCI	GGATG	3 cut(s)	10, 544, 855
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	215, 216, 457
Cac8I	GCNNGC	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	223, 707
Cfr42I	CCGCGG	1 cut(s)	241
Csp6I	GTAC	4 cut(s)	280, 516, 714, 775
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	2 cut(s)	15, 331
CviQI	GTAC	4 cut(s)	280, 516, 714, 775
DdeI	CTNAG	6 cut(s)	120, 173, 375, 621, 627, 864
DpnI	GATC	3 cut(s)	323, 449, 582
DpnII	GATC	3 cut(s)	321, 447, 580
EaeI	YGGCCR	2 cut(s)	111, 144
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	707
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	825
EcoICRI	GAGCTC	1 cut(s)	71
EcoNI	CCTNNNNNAGG	2 cut(s)	390, 611
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	2 cut(s)	18, 334
FaiI	YATR	6 cut(s)	16, 332, 478, 489, 786, 827
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	2 cut(s)	14, 330
Fnu4HI	GCNGC	3 cut(s)	207, 241, 258
FokI	GGATG	3 cut(s)	17, 551, 842
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	3 cut(s)	207, 241, 258
FspBI	CTAG	2 cut(s)	66, 245
GluI	GCNGC	3 cut(s)	207, 241, 258
GsaI	CCCAGC	1 cut(s)	495
GsuI	CTGGAG	2 cut(s)	186, 663
HaeIII	GGCC	7 cut(s)	113, 146, 158, 224, 243, 257, 665
HapII	CCGG	1 cut(s)	711
Hin1II	CATG	2 cut(s)	18, 334
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HinfI	GANTC	1 cut(s)	603
HpaII	CCGG	1 cut(s)	711
HphI	GGTGA	3 cut(s)	314, 407, 706
Hpy166II	GTNNAC	2 cut(s)	282, 657
Hpy188I	TCNGA	4 cut(s)	378, 413, 820, 844
Hpy188III	TCNNGA	3 cut(s)	457, 560, 719
Hpy8I	GTNNAC	2 cut(s)	282, 657
HpyAV	CCTTC	4 cut(s)	161, 244, 529, 722
HpyCH4III	ACNGT	3 cut(s)	31, 268, 769
HpyCH4V	TGCA	3 cut(s)	209, 467, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 237, 762, 836
HpyF3I	CTNAG	6 cut(s)	120, 173, 375, 621, 627, 864
Hsp92II	CATG	2 cut(s)	18, 334
KspI	CCGCGG	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	321, 447, 580
LmnI	GCTCC	5 cut(s)	76, 150, 236, 277, 762
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	2 cut(s)	532, 759
MaeI	CTAG	2 cut(s)	66, 245
MaeIII	GTNAC	2 cut(s)	213, 302
MalI	GATC	3 cut(s)	323, 449, 582
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	3 cut(s)	321, 447, 580
MboII	GAAGA	5 cut(s)	30, 33, 36, 39, 331
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	2 cut(s)	73, 767
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	2 cut(s)	95, 354
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	612
MmeI	TCCRAC	3 cut(s)	389, 391, 685
Mox20I	TGGCCA	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	797
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	3 cut(s)	291, 585, 746
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	2 cut(s)	206, 240
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	2 cut(s)	148, 711
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	4 cut(s)	68, 237, 762, 836
NciI	CCSGG	1 cut(s)	711
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	3 cut(s)	321, 447, 580
NlaIII	CATG	2 cut(s)	18, 334
NlaIV	GGNNCC	1 cut(s)	709
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	213, 302
PdmI	GAANNNNTTC	1 cut(s)	797
PkrI	GCNGC	3 cut(s)	208, 242, 259
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	223, 707
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	4 cut(s)	281, 517, 715, 776
RsaNI	GTAC	4 cut(s)	280, 516, 714, 775
SacI	GAGCTC	1 cut(s)	73
SacII	CCGCGG	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	291, 585, 746
SatI	GCNGC	3 cut(s)	207, 241, 258
Sau3AI	GATC	3 cut(s)	321, 447, 580
Sau96I	GGNCC	2 cut(s)	223, 707
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	2 cut(s)	148, 711
SduI	GDGCHC	2 cut(s)	73, 767
SfaNI	GCATC	2 cut(s)	532, 759
SfcI	CTRYAG	1 cut(s)	207
Sfr303I	CCGCGG	1 cut(s)	241
SgrBI	CCGCGG	1 cut(s)	241
SinI	GGWCC	1 cut(s)	707
SmlI	CTYRAG	2 cut(s)	387, 560
SmoI	CTYRAG	2 cut(s)	387, 560
Sse9I	AATT	2 cut(s)	95, 354
SsiI	CCGC	4 cut(s)	229, 238, 240, 258
SspMI	CTAG	2 cut(s)	66, 245
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	146, 709
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	31, 268, 769
TaqI	TCGA	1 cut(s)	287
TasI	AATT	2 cut(s)	95, 354
TatI	WGTACW	2 cut(s)	279, 774
TauI	GCSGC	2 cut(s)	243, 260
Tru1I	TTAA	3 cut(s)	291, 585, 746
Tru9I	TTAA	3 cut(s)	291, 585, 746
TscAI	CASTG	3 cut(s)	216, 222, 457
TseFI	GTSAC	2 cut(s)	213, 302
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	2 cut(s)	213, 302
TspDTI	ATGAA	1 cut(s)	88
TspRI	CASTG	3 cut(s)	216, 222, 457
VpaK11BI	GGWCC	1 cut(s)	707
XagI	CCTNNNNNAGG	2 cut(s)	390, 611
XapI	RAATTY	2 cut(s)	95, 354
XmnI	GAANNNNTTC	1 cut(s)	797
XspI	CTAG	2 cut(s)	66, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.