Rmu_sc0005382.1_g000006

Belongs to the GroES chaperonin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005382.1
OG0013355
Physical Location & Seq
Forward (+)
13452 .. 15601
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005382.1_g000006.1.cds

Sequence Viewer

Length: 918 bp
atggccacagctcagctaacagcctcatctatctcggccaggagcttggcctcatttgaagggcttagacccttttcttcttcttcttcttcttcttcttcactctacaaagccactagagctcctcctcctctcttctcctcaacattcattagagaaatggccacagctcagctaacagcctcatctatctcggccaggagcttggcctcatttgaagggcttagaccctcaaacagcaagtttgggtctccagctgcagtgtcactggtggcccaccgctccttccgcggcctagtcgtcaaggccgccaccaccgttgctcccaagtacacttcgattaggcctttgggtgacagagtgcttgtgaagatcaacaccgcggaggagaaaactggtggtggaattttgcttccaaccacagctcagacaaagcctcaaggaggtgaagtggttgctgttggagagggcaaaaccattggcaaaacaaaagtggggatcagtgtccagactggtgcagaagttgtatattccaagtatgctgggacagaagtggagttcaatggtacaaagcatcttattttgaaggatgatgacatcgttggtattcttgagacagatgatgtcaaggatcttaaacccctgaatgatagagtcctaatcaaggttgctgaggctgagcaaaagaccgctggaggtttgttgttgacagaggccagcaaagagaaaccctccattggcgaggtgattgctgttggacccggtactcttgacgaggaagggaacaagaaaccattaagcatcagcaaggggagcacagttttgtactccaagtatgcagggaatgacttcaagggcaaagatggttctgaatacatagctttgagggcttcagatgtcattgccatcctttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009787 GO:0009788 GO:0009893 GO:0009941 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0019222 GO:0022607 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0035966 GO:0042221 GO:0042651 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0051341 GO:0051353 GO:0055035 GO:0061077 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080134 GO:0080135 GO:0090322 GO:1900407 GO:1900409 GO:1901031 GO:1901033 GO:1901419 GO:1901420 GO:1901668 GO:1901671 GO:1902882 GO:1902884 GO:1904833 GO:1905957 GO:1905958 GO:2000121 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cpn10

Protein Analysis

305

Amino Acids

31.84

Weight (kDa)

9.27

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20720 AT5G20720 AT5G20720 AT5G20720
fragaria_vesca FvH4_1g09160
malus_domestica MD02G1096600.v1.1 MD15G1221300.v1.1
prunus_persica Prupe.7G194300_v2.0.a1
pyrus_communis pycom02g07660
rosa_chinensis RchiOBHm_Chr2g0095561
rosa_multiflora Rmu_sc0005382.1_g000006 Rmu_sc0038699.1_g000001
rosa_roxburghii Rroxscaffold_2G00146190
rosa_rugosa Rorug02G0052400
rosa_samantha Rh2BG101700 Rh2CG103800 Rh2DG101100
rosa_wichuraiana Rw2G007610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 282
AccII CGCG 2 cut(s) 291, 383
AciI CCGC 7 cut(s) 280, 289, 291, 309, 381, 383, 690
AclWI GGATC 2 cut(s) 506, 639
AcoI YGGCCR 4 cut(s) 3, 36, 162, 195
AcsI RAATTY 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 876
AfaI GTAC 4 cut(s) 332, 568, 766, 827
AfiI CCNNNNNNNGG 3 cut(s) 443, 664, 737
AgsI TTSAA 5 cut(s) 59, 218, 562, 586, 853
AjnI CCWGG 2 cut(s) 38, 197
Alw21I GWGCWC 2 cut(s) 124, 818
Alw26I GTCTC 2 cut(s) 255, 608
AlwI GGATC 2 cut(s) 506, 639
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 848
AspS9I GGNCC 2 cut(s) 274, 758
AsuC2I CCSGG 1 cut(s) 762
AsuHPI GGTGA 3 cut(s) 365, 458, 757
AvaII GGWCC 1 cut(s) 758
BalI TGGCCA 2 cut(s) 5, 164
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 2 cut(s) 124, 818
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 1 cut(s) 244
BccI CCATC 2 cut(s) 857, 914
BcgI CGANNNNNNTGC 2 cut(s) 731, 765
BciT130I CCWGG 2 cut(s) 40, 199
BcnI CCSGG 1 cut(s) 762
BcoDI GTCTC 2 cut(s) 255, 608
BfaI CTAG 2 cut(s) 117, 296
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 3 cut(s) 258, 292, 309
BlpI GCTNAGC 3 cut(s) 12, 171, 678
BlsI GCNGC 3 cut(s) 259, 293, 310
Bme1390I CCNGG 3 cut(s) 40, 199, 762
Bme18I GGWCC 1 cut(s) 758
BmgT120I GGNCC 2 cut(s) 274, 758
BmiI GGNNCC 1 cut(s) 760
BmrFI CCNGG 3 cut(s) 40, 199, 762
BmsI GCATC 2 cut(s) 583, 810
BplI GAGNNNNNCTC 2 cut(s) 716, 748
BpmI CTGGAG 2 cut(s) 237, 714
Bpu10I CCTNAGC 1 cut(s) 672
Bpu1102I GCTNAGC 3 cut(s) 12, 171, 678
BpuEI CTTGAG 2 cut(s) 423, 632
BpuMI CCSGG 1 cut(s) 762
BsaI GGTCTC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 289, 381
BsaXI ACNNNNNCTCC 6 cut(s) 106, 136, 307, 337, 435, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 443, 664, 737
Bse1I ACTGG 3 cut(s) 273, 400, 517
Bse3DI GCAATG 1 cut(s) 900
BseBI CCWGG 2 cut(s) 40, 199
BseDI CCNNGG 2 cut(s) 289, 381
BseGI GGATG 2 cut(s) 595, 906
BseLI CCNNNNNNNGG 3 cut(s) 443, 664, 737
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 5 cut(s) 26, 185, 440, 663, 669
BseNI ACTGG 3 cut(s) 273, 400, 517
BseRI GAGGAG 5 cut(s) 114, 117, 120, 130, 401
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 537
Bsh1236I CGCG 2 cut(s) 291, 383
BsiHKAI GWGCWC 2 cut(s) 124, 818
BsiSI CCGG 1 cut(s) 762
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 3 cut(s) 443, 664, 737
BsmAI GTCTC 2 cut(s) 255, 608
BsmFI GGGAC 1 cut(s) 559
Bso31I GGTCTC 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 124, 818
Bsp143I GATC 3 cut(s) 372, 498, 631
Bsp1720I GCTNAGC 3 cut(s) 12, 171, 678
BspACI CCGC 7 cut(s) 280, 289, 291, 309, 381, 383, 690
BspCNI CTCAG 5 cut(s) 25, 184, 439, 664, 670
BspFNI CGCG 2 cut(s) 291, 383
BspLI GGNNCC 1 cut(s) 760
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 2 cut(s) 506, 639
BspTNI GGTCTC 1 cut(s) 255
BsrBI CCGCTC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 900
BsrI ACTGG 3 cut(s) 273, 400, 517
BssECI CCNNGG 2 cut(s) 289, 381
BssMI GATC 3 cut(s) 372, 498, 631
Bst2UI CCWGG 2 cut(s) 40, 199
Bst4CI ACNGT 2 cut(s) 319, 820
Bst6I CTCTTC 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 718
BstDEI CTNAG 8 cut(s) 12, 65, 171, 224, 426, 672, 678, 915
BstDSI CCRYGG 2 cut(s) 289, 381
BstENI CCTNNNNNAGG 2 cut(s) 441, 662
BstF5I GGATG 2 cut(s) 595, 906
BstFNI CGCG 2 cut(s) 291, 383
BstKTI GATC 3 cut(s) 375, 501, 634
BstMAI GTCTC 2 cut(s) 255, 608
BstMBI GATC 3 cut(s) 372, 498, 631
BstMWI GCNNNNNNNGC 4 cut(s) 119, 288, 813, 887
BstNI CCWGG 2 cut(s) 40, 199
BstSCI CCNGG 3 cut(s) 38, 197, 760
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 2 cut(s) 291, 383
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 631
BstXI CCANNNNNNTGG 2 cut(s) 46, 205
BstYI RGATCY 1 cut(s) 631
BtgI CCRYGG 2 cut(s) 289, 381
BtsCI GGATG 2 cut(s) 595, 906
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 3 cut(s) 266, 267, 508
Cac8I GCNNGC 1 cut(s) 718
Cfr13I GGNCC 2 cut(s) 274, 758
Cfr42I CCGCGG 2 cut(s) 292, 384
Csp6I GTAC 4 cut(s) 331, 567, 765, 826
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviQI GTAC 4 cut(s) 331, 567, 765, 826
DdeI CTNAG 8 cut(s) 12, 65, 171, 224, 426, 672, 678, 915
DpnI GATC 3 cut(s) 374, 500, 633
DpnII GATC 3 cut(s) 372, 498, 631
EaeI YGGCCR 4 cut(s) 3, 36, 162, 195
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 758
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 876
EcoICRI GAGCTC 1 cut(s) 122
EcoNI CCTNNNNNAGG 2 cut(s) 441, 662
EcoRII CCWGG 2 cut(s) 38, 197
EcoT38I GRGCYC 1 cut(s) 124
FaiI YATR 4 cut(s) 529, 540, 837, 878
FaqI GGGAC 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 258, 292, 309
FokI GGATG 2 cut(s) 602, 893
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 3 cut(s) 258, 292, 309
FspBI CTAG 2 cut(s) 117, 296
GluI GCNGC 3 cut(s) 258, 292, 309
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 2 cut(s) 237, 714
HapII CCGG 1 cut(s) 762
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HinfI GANTC 1 cut(s) 654
HpaII CCGG 1 cut(s) 762
HphI GGTGA 3 cut(s) 365, 458, 757
Hpy166II GTNNAC 2 cut(s) 333, 708
Hpy188I TCNGA 3 cut(s) 429, 871, 895
Hpy188III TCNNGA 3 cut(s) 508, 611, 770
Hpy8I GTNNAC 2 cut(s) 333, 708
HpyAV CCTTC 5 cut(s) 53, 212, 295, 580, 773
HpyCH4III ACNGT 2 cut(s) 319, 820
HpyCH4V TGCA 3 cut(s) 260, 518, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 288, 813, 887
HpyF3I CTNAG 8 cut(s) 12, 65, 171, 224, 426, 672, 678, 915
KspI CCGCGG 2 cut(s) 292, 384
Kzo9I GATC 3 cut(s) 372, 498, 631
LmnI GCTCC 6 cut(s) 42, 127, 201, 287, 328, 813
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 2 cut(s) 583, 810
MaeI CTAG 2 cut(s) 117, 296
MaeIII GTNAC 2 cut(s) 264, 353
MalI GATC 3 cut(s) 374, 500, 633
MbiI CCGCTC 1 cut(s) 282
MboI GATC 3 cut(s) 372, 498, 631
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 2 cut(s) 124, 818
MlsI TGGCCA 2 cut(s) 5, 164
MluCI AATT 1 cut(s) 405
MluNI TGGCCA 2 cut(s) 5, 164
MlyI GAGTC 1 cut(s) 663
MmeI TCCRAC 3 cut(s) 440, 442, 736
Mox20I TGGCCA 2 cut(s) 5, 164
MroXI GAANNNNTTC 1 cut(s) 848
MscI TGGCCA 2 cut(s) 5, 164
MseI TTAA 2 cut(s) 636, 797
Msp20I TGGCCA 2 cut(s) 5, 164
MspA1I CMGCKG 4 cut(s) 257, 291, 383, 692
MspI CCGG 1 cut(s) 762
MspR9I CCNGG 3 cut(s) 40, 199, 762
MvaI CCWGG 2 cut(s) 40, 199
MvnI CGCG 2 cut(s) 291, 383
MwoI GCNNNNNNNGC 4 cut(s) 119, 288, 813, 887
NciI CCSGG 1 cut(s) 762
NdeII GATC 3 cut(s) 372, 498, 631
NlaIV GGNNCC 1 cut(s) 760
NmeAIII GCCGAG 2 cut(s) 14, 173
NmuCI GTSAC 2 cut(s) 264, 353
PceI AGGCCT 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 848
PkrI GCNGC 3 cut(s) 259, 293, 310
PleI GAGTC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 662
Psp124BI GAGCTC 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 38, 197
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 2 cut(s) 38, 197
PspN4I GGNNCC 1 cut(s) 760
PspPI GGNCC 2 cut(s) 274, 758
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 631
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 4 cut(s) 332, 568, 766, 827
RsaNI GTAC 4 cut(s) 331, 567, 765, 826
SacI GAGCTC 1 cut(s) 124
SacII CCGCGG 2 cut(s) 292, 384
SaqAI TTAA 2 cut(s) 636, 797
SatI GCNGC 3 cut(s) 258, 292, 309
Sau3AI GATC 3 cut(s) 372, 498, 631
Sau96I GGNCC 2 cut(s) 274, 758
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 3 cut(s) 40, 199, 762
SduI GDGCHC 2 cut(s) 124, 818
SfaNI GCATC 2 cut(s) 583, 810
SfcI CTRYAG 1 cut(s) 258
Sfr303I CCGCGG 2 cut(s) 292, 384
SgrBI CCGCGG 2 cut(s) 292, 384
SinI GGWCC 1 cut(s) 758
SmlI CTYRAG 2 cut(s) 438, 611
SmoI CTYRAG 2 cut(s) 438, 611
Sse9I AATT 1 cut(s) 405
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 7 cut(s) 280, 289, 291, 309, 381, 383, 690
SspMI CTAG 2 cut(s) 117, 296
SstI GAGCTC 1 cut(s) 124
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 3 cut(s) 38, 197, 760
TaaI ACNGT 2 cut(s) 319, 820
TaqI TCGA 1 cut(s) 338
TasI AATT 1 cut(s) 405
TatI WGTACW 2 cut(s) 330, 825
TauI GCSGC 2 cut(s) 294, 311
Tru1I TTAA 2 cut(s) 636, 797
Tru9I TTAA 2 cut(s) 636, 797
TscAI CASTG 3 cut(s) 267, 273, 508
TseFI GTSAC 2 cut(s) 264, 353
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 2 cut(s) 264, 353
TspDTI ATGAA 1 cut(s) 139
TspRI CASTG 3 cut(s) 267, 273, 508
VpaK11BI GGWCC 1 cut(s) 758
XagI CCTNNNNNAGG 2 cut(s) 441, 662
XapI RAATTY 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 848
XspI CTAG 2 cut(s) 117, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.