Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013355

Physical Location & Seq

Genomic Coordinates Reverse (-)

7414067 .. 7415976

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCACAGCTCAGCTAACAGCCTCATCTATCTCGGCCAGGAGCTTGGCCTCATTTGAAGGGCTTAGACCCTCAAACAGCAAGTTTGGGTCTCCAGCTGCAGTGTCACTGGTGGCCCACCGCTCCTTCCGCGGCCTAGTCGTCAAGGCCGCCACCACCGTTGCTCCCAAGTACACTTCGATTAAGCCTTTGGGTGACAGAGTGCTTGTGAAGATCAACACCGCGGAGGAGAAAACTGGTGGTGGAATTTTGCTTCCAACCACAGCTCAGACAAAGCCTCAAGGAGGTGAAGTGGTTGCTGTCGGAGAGGGCAAAACCATTGGCAAAACAAAAGTGGGCATCAGTGTCCAGACTGGTGCAGAAGTTGTATATTCCAAGTATGCTGGGACAGAAGTGGAGTTCAATGGTACAAAGCATCTTATTTTGAAGGATGATGACATCGTTGGTATTCTTGAGACAGATGATGTCAAGGATCTTAAACCCCTGAATGATAGAGTCCTAATCAAGGTTGCTGAGGCTGAGCAAAAGACCGCTGGAGGTTTGTTGTTGACAGAGGCCAGCAAAGAGAAACCCTCCATTGGCGAGGTGATTGCTGTTGGACCCGGTACTCTTGACGAGGAAGGGAACAGGAAACCATTAAGCATCAGCAAGGGGAGCACAGTTTTGTACTCCAAGTATGCAGGGAATGACTTCAAGGGCAAAGATGGTTCTGAATACATAGCTTTGAGGGCTTCAGATGTCATTGCCATCCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009787 GO:0009788 GO:0009893 GO:0009941 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0019222 GO:0022607 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0035966 GO:0042221 GO:0042651 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0051341 GO:0051353 GO:0055035 GO:0061077 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080134 GO:0080135 GO:0090322 GO:1900407 GO:1900409 GO:1901031 GO:1901033 GO:1901419 GO:1901420 GO:1901668 GO:1901671 GO:1902882 GO:1902884 GO:1904833 GO:1905957 GO:1905958 GO:2000121 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

252

Amino Acids

26.28

Weight (kDa)

8.86

Isoelectric Point (pI)

19.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	61 - 150	6.3e-29	Chaperonin 10 Kd subunit
Cpn10	PF00166	159 - 250	5.1e-29	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20720 AT5G20720 AT5G20720 AT5G20720
fragaria_vesca	FvH4_1g09160
malus_domestica	MD02G1096600.v1.1 MD15G1221300.v1.1
prunus_persica	Prupe.7G194300_v2.0.a1
pyrus_communis	pycom02g07660
rosa_chinensis	RchiOBHm_Chr2g0095561
rosa_multiflora	Rmu_sc0005382.1_g000006 Rmu_sc0038699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146190
rosa_rugosa	Rorug02G0052400
rosa_samantha	Rh2BG101700 Rh2CG103800 Rh2DG101100
rosa_wichuraiana	Rw2G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	2 cut(s)	132, 224
AciI	CCGC	7 cut(s)	121, 130, 132, 150, 222, 224, 531
AclWI	GGATC	1 cut(s)	480
AcoI	YGGCCR	2 cut(s)	3, 36
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	4 cut(s)	173, 409, 607, 668
AfiI	CCNNNNNNNGG	3 cut(s)	284, 505, 578
AgsI	TTSAA	4 cut(s)	59, 403, 427, 694
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	6 cut(s)	11, 16, 45, 98, 266, 722
AluI	AGCT	6 cut(s)	11, 16, 45, 98, 266, 722
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	2 cut(s)	96, 449
AlwI	GGATC	1 cut(s)	480
AoxI	GGCC	7 cut(s)	3, 36, 48, 114, 133, 147, 555
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	115, 599
AsuC2I	CCSGG	1 cut(s)	603
AsuHPI	GGTGA	3 cut(s)	206, 299, 598
AvaII	GGWCC	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	659
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	698, 755
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciT130I	CCWGG	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	603
BcoDI	GTCTC	2 cut(s)	96, 449
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	3 cut(s)	99, 133, 150
BlpI	GCTNAGC	2 cut(s)	12, 519
BlsI	GCNGC	3 cut(s)	100, 134, 151
Bme1390I	CCNGG	2 cut(s)	40, 603
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	2 cut(s)	115, 599
BmiI	GGNNCC	1 cut(s)	601
BmrFI	CCNGG	2 cut(s)	40, 603
BmsI	GCATC	3 cut(s)	348, 424, 651
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
BpmI	CTGGAG	2 cut(s)	78, 555
Bpu10I	CCTNAGC	1 cut(s)	513
Bpu1102I	GCTNAGC	2 cut(s)	12, 519
BpuEI	CTTGAG	2 cut(s)	264, 473
BpuMI	CCSGG	1 cut(s)	603
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	130, 222
BsaXI	ACNNNNNCTCC	4 cut(s)	148, 178, 276, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 505, 578
Bse1I	ACTGG	3 cut(s)	114, 241, 358
Bse3DI	GCAATG	1 cut(s)	741
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	2 cut(s)	130, 222
BseGI	GGATG	2 cut(s)	436, 747
BseLI	CCNNNNNNNGG	3 cut(s)	284, 505, 578
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	4 cut(s)	26, 281, 504, 510
BseNI	ACTGG	3 cut(s)	114, 241, 358
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	2 cut(s)	132, 224
BshFI	GGCC	7 cut(s)	5, 38, 50, 116, 135, 149, 557
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	284, 505, 578
BsmAI	GTCTC	2 cut(s)	96, 449
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	7 cut(s)	5, 38, 50, 116, 135, 149, 557
Bso31I	GGTCTC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	2 cut(s)	213, 472
Bsp1720I	GCTNAGC	2 cut(s)	12, 519
BspACI	CCGC	7 cut(s)	121, 130, 132, 150, 222, 224, 531
BspANI	GGCC	7 cut(s)	5, 38, 50, 116, 135, 149, 557
BspCNI	CTCAG	4 cut(s)	25, 280, 505, 511
BspFNI	CGCG	2 cut(s)	132, 224
BspLI	GGNNCC	1 cut(s)	601
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	741
BsrI	ACTGG	3 cut(s)	114, 241, 358
BssECI	CCNNGG	2 cut(s)	130, 222
BssMI	GATC	2 cut(s)	213, 472
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	160, 661
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	6 cut(s)	12, 65, 267, 513, 519, 756
BstDSI	CCRYGG	2 cut(s)	130, 222
BstENI	CCTNNNNNAGG	2 cut(s)	282, 503
BstF5I	GGATG	2 cut(s)	436, 747
BstFNI	CGCG	2 cut(s)	132, 224
BstKTI	GATC	2 cut(s)	216, 475
BstMAI	GTCTC	2 cut(s)	96, 449
BstMBI	GATC	2 cut(s)	213, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 654, 728
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	38, 601
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	2 cut(s)	132, 224
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	472
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	7 cut(s)	5, 38, 50, 116, 135, 149, 557
BtgI	CCRYGG	2 cut(s)	130, 222
BtsCI	GGATG	2 cut(s)	436, 747
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	107, 108, 349
Cac8I	GCNNGC	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	115, 599
Cfr42I	CCGCGG	2 cut(s)	133, 225
Csp6I	GTAC	4 cut(s)	172, 408, 606, 667
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviQI	GTAC	4 cut(s)	172, 408, 606, 667
DdeI	CTNAG	6 cut(s)	12, 65, 267, 513, 519, 756
DpnI	GATC	2 cut(s)	215, 474
DpnII	GATC	2 cut(s)	213, 472
EaeI	YGGCCR	2 cut(s)	3, 36
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	717
EcoNI	CCTNNNNNAGG	2 cut(s)	282, 503
EcoRII	CCWGG	1 cut(s)	38
FaiI	YATR	4 cut(s)	370, 381, 678, 719
FaqI	GGGAC	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	99, 133, 150
FokI	GGATG	2 cut(s)	443, 734
Fsp4HI	GCNGC	3 cut(s)	99, 133, 150
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	3 cut(s)	99, 133, 150
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	2 cut(s)	78, 555
HaeIII	GGCC	7 cut(s)	5, 38, 50, 116, 135, 149, 557
HapII	CCGG	1 cut(s)	603
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HinfI	GANTC	1 cut(s)	495
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	3 cut(s)	206, 299, 598
Hpy166II	GTNNAC	2 cut(s)	174, 549
Hpy188I	TCNGA	4 cut(s)	270, 305, 712, 736
Hpy188III	TCNNGA	3 cut(s)	349, 452, 611
Hpy8I	GTNNAC	2 cut(s)	174, 549
HpyAV	CCTTC	4 cut(s)	53, 136, 421, 614
HpyCH4III	ACNGT	2 cut(s)	160, 661
HpyCH4V	TGCA	3 cut(s)	101, 359, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 654, 728
HpyF3I	CTNAG	6 cut(s)	12, 65, 267, 513, 519, 756
KspI	CCGCGG	2 cut(s)	133, 225
Kzo9I	GATC	2 cut(s)	213, 472
LmnI	GCTCC	4 cut(s)	42, 128, 169, 654
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	3 cut(s)	348, 424, 651
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	105, 194
MalI	GATC	2 cut(s)	215, 474
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	2 cut(s)	213, 472
MboII	GAAGA	1 cut(s)	223
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	504
MmeI	TCCRAC	3 cut(s)	281, 283, 577
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	689
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	183, 477, 638
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	4 cut(s)	98, 132, 224, 533
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	2 cut(s)	40, 603
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	2 cut(s)	132, 224
MwoI	GCNNNNNNNGC	3 cut(s)	129, 654, 728
NciI	CCSGG	1 cut(s)	603
NdeII	GATC	2 cut(s)	213, 472
NlaIV	GGNNCC	1 cut(s)	601
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	105, 194
PdmI	GAANNNNTTC	1 cut(s)	689
PkrI	GCNGC	3 cut(s)	100, 134, 151
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	601
PspPI	GGNCC	2 cut(s)	115, 599
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	4 cut(s)	173, 409, 607, 668
RsaNI	GTAC	4 cut(s)	172, 408, 606, 667
SacII	CCGCGG	2 cut(s)	133, 225
SaqAI	TTAA	3 cut(s)	183, 477, 638
SatI	GCNGC	3 cut(s)	99, 133, 150
Sau3AI	GATC	2 cut(s)	213, 472
Sau96I	GGNCC	2 cut(s)	115, 599
SchI	GAGTC	1 cut(s)	504
ScrFI	CCNGG	2 cut(s)	40, 603
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	3 cut(s)	348, 424, 651
SfcI	CTRYAG	1 cut(s)	99
Sfr303I	CCGCGG	2 cut(s)	133, 225
SgrBI	CCGCGG	2 cut(s)	133, 225
SinI	GGWCC	1 cut(s)	599
SmlI	CTYRAG	2 cut(s)	279, 452
SmoI	CTYRAG	2 cut(s)	279, 452
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	7 cut(s)	121, 130, 132, 150, 222, 224, 531
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	38, 601
TaaI	ACNGT	2 cut(s)	160, 661
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	246
TatI	WGTACW	2 cut(s)	171, 666
TauI	GCSGC	2 cut(s)	135, 152
Tru1I	TTAA	3 cut(s)	183, 477, 638
Tru9I	TTAA	3 cut(s)	183, 477, 638
TscAI	CASTG	3 cut(s)	108, 114, 349
TseFI	GTSAC	2 cut(s)	105, 194
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	2 cut(s)	105, 194
TspRI	CASTG	3 cut(s)	108, 114, 349
VpaK11BI	GGWCC	1 cut(s)	599
XagI	CCTNNNNNAGG	2 cut(s)	282, 503
XapI	RAATTY	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	689
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.