FvH4_1g09430

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017214
Physical Location & Seq
Reverse (-)
5060203 .. 5062497
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09430.t1

Sequence Viewer

Length: 1206 bp
ATGGCTACCCTGCAGATTATTTCTCTCTTCAGTCACTTAACCATGATCTGTGTGATGATGATGAGTAGCTGCCATGGAGCATTTGCTACAGACCCGGCATTGGATACTAGTACTACTACTAGTACTGCTGCCTTGTTTGTTTTCGGTGACTCCACTGTGGATCCTGGCAACAACAACTACATCACAACCATCCCGGAACACCAAGCACATTACAAGCCCTACGGCCAGAATGGCTTCTTTGACCACCCCACCGGACGTTTCTCCGACGGCCGTGTCATTGTAGACTACATAGCGGAGTATGCAAAGCTGCCACTAATCCCTCCATTTTTGGGACCAACTTCTGATTATACAAATGGAGTTAACTTTGCATCTGGTGGAGCTGGTGTTCTTCCGGAAACCAATCAAGGATTGGCGATTGATCTTCCAACACAATTGAGGTACTTTGAAGAGGTGCAAAAACGGTTGACAAAAAAATTGGGAGAAGAGAAGGCAAAGGAAGTGATATCAGAAGCAGTGTATTTCATTAGTATTGGAAGCAATGACTATATGGGAGGTTACTTAGGTAATCCAAAAATGCAGGAACTATATAACCCTGAACAATATGTGGGGATGGTAATCGGAAACTTGACGCAGGCAATCCAAGTGCTGTATGAGAAAGGAGGTAGAAAATTTGGTTTCTTGAGGTTGGCTCCGCTTGGTTGCTTGCCTGCGTTTAGAGCTGTGAACCTCAGAGCCACGAAAGGCAGACGGGGCTGTTTTGAAGGAGCTTCTGCCCTTGCACTAATGCATAACGATGCACTTAACACGGTGCTGGCAAACCTTGGATTTGTGCTTAAAGAGTTCAAGTACTGCAGCTCTAACTTCTATGAATGGCTCCAGGAAAGAATAGATCATCCTTACAAATATGGTTTCAAGGATGGAATGAATGCTTGTTGCGGAAGCGGACCATATGGAGGCTCATTCACCTGTGGAGGCACAAAGAAGGACAAAGATTACCAGTTATGTAACAATGCTGATGATTATATATGGTGGGACTCTTTCCATGCAACAGAGAGGATCCAAGAGCAACTTGCCAAGGGTCTCTGGAGTGGAGAGCCTTTTTATGTCGGGCCATACAACCTAGAAAGTCTATTCTTTGAGAAGGAGAAGCTCACCATAGGCATCATAGTCGATAAACCAGAAGCAGATCCGTTTCAGTCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

402

Amino Acids

44.53

Weight (kDa)

5.45

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 45 - 360 3.8e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017214)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09430
malus_domestica MD02G1102600.v1.1
prunus_persica Prupe.7G191700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0095981
rosa_laevigata RLG00000016614
rosa_multiflora Rmu_sc0002497.1_g000009
rosa_roxburghii Rroxscaffold_2G00145890
rosa_rugosa Rorug02G0055600
rosa_samantha Rh2AG103500 Rh2BG105000 Rh2CG107500 Rh2DG105400
rosa_wichuraiana Rw2G007890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 282
AccIII TCCGGA 1 cut(s) 391
AciI CCGC 4 cut(s) 293, 692, 936, 942
AclWI GGATC 5 cut(s) 155, 168, 1051, 1064, 1181
AcoI YGGCCR 2 cut(s) 223, 268
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 4 cut(s) 112, 124, 440, 848
AfiI CCNNNNNNNGG 3 cut(s) 100, 329, 953
AgsI TTSAA 4 cut(s) 446, 761, 844, 913
AhlI ACTAGT 2 cut(s) 107, 119
AjnI CCWGG 2 cut(s) 163, 876
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
AluBI AGCT 7 cut(s) 69, 307, 380, 719, 767, 855, 1150
AluI AGCT 7 cut(s) 69, 307, 380, 719, 767, 855, 1150
Alw26I GTCTC 1 cut(s) 1085
AlwI GGATC 5 cut(s) 155, 168, 1051, 1064, 1181
Aor13HI TCCGGA 1 cut(s) 391
AoxI GGCC 3 cut(s) 223, 268, 1109
ApeKI GCWGC 4 cut(s) 69, 128, 307, 852
ApoI RAATTY 1 cut(s) 668
Asp700I GAANNNNTTC 1 cut(s) 233
AspS9I GGNCC 3 cut(s) 332, 944, 1109
AsuC2I CCSGG 2 cut(s) 95, 194
AsuHPI GGTGA 3 cut(s) 158, 955, 1144
AvaII GGWCC 2 cut(s) 332, 944
BamHI GGATCC 2 cut(s) 160, 1056
BbvI GCAGC 4 cut(s) 56, 115, 294, 864
BccI CCATC 3 cut(s) 197, 604, 911
BceAI ACGGC 3 cut(s) 238, 255, 283
BcgI CGANNNNNNTGC 2 cut(s) 1150, 1184
BciT130I CCWGG 2 cut(s) 165, 878
BciVI GTATCC 1 cut(s) 97
BcnI CCSGG 2 cut(s) 95, 194
BcoDI GTCTC 1 cut(s) 1085
BcuI ACTAGT 2 cut(s) 107, 119
BfaI CTAG 3 cut(s) 108, 120, 1121
BfmI CTRYAG 3 cut(s) 11, 87, 850
BfuI GTATCC 1 cut(s) 97
BglI GCCNNNNNGGC 1 cut(s) 231
BisI GCNGC 4 cut(s) 70, 129, 308, 853
BlsI GCNGC 4 cut(s) 71, 130, 309, 854
BmcAI AGTACT 3 cut(s) 112, 124, 848
Bme1390I CCNGG 4 cut(s) 95, 165, 194, 878
Bme18I GGWCC 2 cut(s) 332, 944
BmgT120I GGNCC 3 cut(s) 332, 944, 1109
BmiI GGNNCC 5 cut(s) 162, 333, 690, 875, 1058
BmrFI CCNGG 4 cut(s) 95, 165, 194, 878
BmsI GCATC 3 cut(s) 377, 784, 1170
BplI GAGNNNNNCTC 2 cut(s) 673, 705
BpmI CTGGAG 2 cut(s) 860, 1105
BpuEI CTTGAG 1 cut(s) 700
BpuMI CCSGG 2 cut(s) 95, 194
BsaBI GATNNNNATC 1 cut(s) 614
BsaI GGTCTC 1 cut(s) 1085
BsaJI CCNNGG 3 cut(s) 73, 820, 1074
BsaWI WCCGGW 2 cut(s) 251, 391
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 329, 953
Bse1I ACTGG 1 cut(s) 997
Bse3DI GCAATG 1 cut(s) 544
Bse8I GATNNNNATC 1 cut(s) 614
BseAI TCCGGA 1 cut(s) 391
BseBI CCWGG 2 cut(s) 165, 878
BseDI CCNNGG 3 cut(s) 73, 820, 1074
BseGI GGATG 4 cut(s) 189, 615, 892, 922
BseJI GATNNNNATC 1 cut(s) 614
BseLI CCNNNNNNNGG 3 cut(s) 100, 329, 953
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 1 cut(s) 742
BseNI ACTGG 1 cut(s) 997
BseX3I CGGCCG 1 cut(s) 268
BseXI GCAGC 4 cut(s) 56, 115, 294, 864
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 3 cut(s) 225, 270, 1111
BsiEI CGRYCG 1 cut(s) 271
BsiSI CCGG 4 cut(s) 95, 194, 252, 392
BslFI GGGAC 2 cut(s) 345, 1046
BslI CCNNNNNNNGG 3 cut(s) 100, 329, 953
BsmAI GTCTC 1 cut(s) 1085
BsmFI GGGAC 2 cut(s) 345, 1046
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 3 cut(s) 225, 270, 1111
Bso31I GGTCTC 1 cut(s) 1085
Bsp13I TCCGGA 1 cut(s) 391
Bsp143I GATC 6 cut(s) 45, 160, 418, 889, 1056, 1186
Bsp19I CCATGG 1 cut(s) 73
BspACI CCGC 4 cut(s) 293, 692, 936, 942
BspANI GGCC 3 cut(s) 225, 270, 1111
BspCNI CTCAG 1 cut(s) 741
BspEI TCCGGA 1 cut(s) 391
BspLI GGNNCC 5 cut(s) 162, 333, 690, 875, 1058
BspMAI CTGCAG 2 cut(s) 15, 854
BspPI GGATC 5 cut(s) 155, 168, 1051, 1064, 1181
BspTNI GGTCTC 1 cut(s) 1085
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 1 cut(s) 997
BssECI CCNNGG 3 cut(s) 73, 820, 1074
BssMI GATC 6 cut(s) 45, 160, 418, 889, 1056, 1186
BssT1I CCWWGG 3 cut(s) 73, 820, 1074
Bst2UI CCWGG 2 cut(s) 165, 878
Bst4CI ACNGT 3 cut(s) 157, 462, 808
Bst6I CTCTTC 3 cut(s) 32, 441, 477
BstC8I GCNNGC 4 cut(s) 633, 704, 708, 813
BstDEI CTNAG 2 cut(s) 559, 728
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 4 cut(s) 189, 615, 892, 922
BstKTI GATC 6 cut(s) 48, 163, 421, 892, 1059, 1189
BstMAI GTCTC 1 cut(s) 1085
BstMBI GATC 6 cut(s) 45, 160, 418, 889, 1056, 1186
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 4 cut(s) 231, 299, 716, 750
BstNI CCWGG 2 cut(s) 165, 878
BstSCI CCNGG 4 cut(s) 93, 163, 192, 876
BstSFI CTRYAG 3 cut(s) 11, 87, 850
BstV1I GCAGC 4 cut(s) 56, 115, 294, 864
BstX2I RGATCY 3 cut(s) 160, 1056, 1186
BstYI RGATCY 3 cut(s) 160, 1056, 1186
BstZI CGGCCG 1 cut(s) 268
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 3 cut(s) 225, 270, 1111
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 4 cut(s) 189, 615, 892, 922
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 2 cut(s) 153, 519
Cac8I GCNNGC 4 cut(s) 633, 704, 708, 813
Cfr13I GGNCC 3 cut(s) 332, 944, 1109
CseI GACGC 1 cut(s) 637
Csp6I GTAC 4 cut(s) 111, 123, 439, 847
CviAII CATG 3 cut(s) 43, 74, 1043
CviQI GTAC 4 cut(s) 111, 123, 439, 847
DdeI CTNAG 2 cut(s) 559, 728
DpnI GATC 6 cut(s) 47, 162, 420, 891, 1058, 1188
DpnII GATC 6 cut(s) 45, 160, 418, 889, 1056, 1186
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 2 cut(s) 223, 268
EagI CGGCCG 1 cut(s) 268
Eam1104I CTCTTC 3 cut(s) 32, 441, 477
EarI CTCTTC 3 cut(s) 32, 441, 477
EclXI CGGCCG 1 cut(s) 268
Eco130I CCWWGG 3 cut(s) 73, 820, 1074
Eco31I GGTCTC 1 cut(s) 1085
Eco32I GATATC 1 cut(s) 504
Eco47I GGWCC 2 cut(s) 332, 944
Eco52I CGGCCG 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 163, 876
EcoRV GATATC 1 cut(s) 504
EcoT14I CCWWGG 3 cut(s) 73, 820, 1074
EcoT22I ATGCAT 1 cut(s) 789
ErhI CCWWGG 3 cut(s) 73, 820, 1074
FaeI CATG 3 cut(s) 46, 77, 1046
FalI AAGNNNNNCTT 2 cut(s) 1053, 1085
FaqI GGGAC 2 cut(s) 345, 1046
FatI CATG 3 cut(s) 42, 73, 1042
FauNDI CATATG 1 cut(s) 949
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 4 cut(s) 70, 129, 308, 853
FokI GGATG 4 cut(s) 176, 622, 879, 929
Fsp4HI GCNGC 4 cut(s) 70, 129, 308, 853
FspBI CTAG 3 cut(s) 108, 120, 1121
GluI GCNGC 4 cut(s) 70, 129, 308, 853
GsuI CTGGAG 2 cut(s) 860, 1105
HaeIII GGCC 3 cut(s) 225, 270, 1111
HapII CCGG 4 cut(s) 95, 194, 252, 392
HgaI GACGC 1 cut(s) 637
Hin1II CATG 3 cut(s) 46, 77, 1046
HincII GTYRAC 2 cut(s) 361, 465
HindII GTYRAC 2 cut(s) 361, 465
HinfI GANTC 2 cut(s) 149, 1034
HpaI GTTAAC 1 cut(s) 361
HpaII CCGG 4 cut(s) 95, 194, 252, 392
HphI GGTGA 3 cut(s) 158, 955, 1144
Hpy166II GTNNAC 4 cut(s) 283, 361, 465, 724
Hpy188I TCNGA 5 cut(s) 265, 343, 508, 620, 731
Hpy188III TCNNGA 3 cut(s) 392, 679, 1084
Hpy8I GTNNAC 4 cut(s) 283, 361, 465, 724
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 4 cut(s) 481, 755, 976, 1135
HpyCH4III ACNGT 3 cut(s) 157, 462, 808
HpyCH4IV ACGT 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 299, 716, 750
HpyF3I CTNAG 2 cut(s) 559, 728
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 3 cut(s) 46, 77, 1046
Kpn2I TCCGGA 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 361
Kzo9I GATC 6 cut(s) 45, 160, 418, 889, 1056, 1186
LmnI GCTCC 5 cut(s) 77, 377, 694, 764, 879
Lsp1109I GCAGC 4 cut(s) 56, 115, 294, 864
LweI GCATC 3 cut(s) 377, 784, 1170
MaeI CTAG 3 cut(s) 108, 120, 1121
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 4 cut(s) 32, 146, 554, 1004
MalI GATC 6 cut(s) 47, 162, 420, 891, 1058, 1188
MboI GATC 6 cut(s) 45, 160, 418, 889, 1056, 1186
MboII GAAGA 5 cut(s) 19, 380, 413, 458, 494
MfeI CAATTG 1 cut(s) 431
MflI RGATCY 3 cut(s) 160, 1056, 1186
MluCI AATT 3 cut(s) 431, 473, 668
MlyI GAGTC 2 cut(s) 143, 1028
MmeI TCCRAC 2 cut(s) 288, 449
Mph1103I ATGCAT 1 cut(s) 789
MroI TCCGGA 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 5 cut(s) 38, 360, 801, 834, 1204
MslI CAYNNNNRTG 1 cut(s) 792
MspI CCGG 4 cut(s) 95, 194, 252, 392
MspR9I CCNGG 4 cut(s) 95, 165, 194, 878
MunI CAATTG 1 cut(s) 431
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 2 cut(s) 165, 878
MwoI GCNNNNNNNGC 4 cut(s) 231, 299, 716, 750
NciI CCSGG 2 cut(s) 95, 194
NcoI CCATGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 949
NdeII GATC 6 cut(s) 45, 160, 418, 889, 1056, 1186
NlaIII CATG 3 cut(s) 46, 77, 1046
NlaIV GGNNCC 5 cut(s) 162, 333, 690, 875, 1058
NmuCI GTSAC 2 cut(s) 32, 146
NsiI ATGCAT 1 cut(s) 789
PctI GAATGC 1 cut(s) 931
PdmI GAANNNNTTC 1 cut(s) 233
PfoI TCCNGGA 2 cut(s) 192, 876
PkrI GCNGC 4 cut(s) 71, 130, 309, 854
PleI GAGTC 2 cut(s) 143, 1028
PpsI GAGTC 2 cut(s) 143, 1028
Psp6I CCWGG 2 cut(s) 163, 876
PspGI CCWGG 2 cut(s) 163, 876
PspN4I GGNNCC 5 cut(s) 162, 333, 690, 875, 1058
PspPI GGNCC 3 cut(s) 332, 944, 1109
PstI CTGCAG 2 cut(s) 15, 854
PsuI RGATCY 3 cut(s) 160, 1056, 1186
RsaI GTAC 4 cut(s) 112, 124, 440, 848
RsaNI GTAC 4 cut(s) 111, 123, 439, 847
RseI CAYNNNNRTG 1 cut(s) 792
SaqAI TTAA 5 cut(s) 38, 360, 801, 834, 1204
SatI GCNGC 4 cut(s) 70, 129, 308, 853
Sau3AI GATC 6 cut(s) 45, 160, 418, 889, 1056, 1186
Sau96I GGNCC 3 cut(s) 332, 944, 1109
ScaI AGTACT 3 cut(s) 112, 124, 848
SchI GAGTC 2 cut(s) 143, 1028
ScrFI CCNGG 4 cut(s) 95, 165, 194, 878
SfaNI GCATC 3 cut(s) 377, 784, 1170
SfcI CTRYAG 3 cut(s) 11, 87, 850
SinI GGWCC 2 cut(s) 332, 944
SmiMI CAYNNNNRTG 1 cut(s) 792
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
SpeI ACTAGT 2 cut(s) 107, 119
Sse9I AATT 3 cut(s) 431, 473, 668
SsiI CCGC 4 cut(s) 293, 692, 936, 942
SspMI CTAG 3 cut(s) 108, 120, 1121
StyD4I CCNGG 4 cut(s) 93, 163, 192, 876
StyI CCWWGG 3 cut(s) 73, 820, 1074
TaaI ACNGT 3 cut(s) 157, 462, 808
TaiI ACGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 1170
TasI AATT 3 cut(s) 431, 473, 668
TatI WGTACW 3 cut(s) 110, 122, 846
Tru1I TTAA 5 cut(s) 38, 360, 801, 834, 1204
Tru9I TTAA 5 cut(s) 38, 360, 801, 834, 1204
TscAI CASTG 2 cut(s) 160, 519
TseFI GTSAC 2 cut(s) 32, 146
TseI GCWGC 4 cut(s) 69, 128, 307, 852
Tsp45I GTSAC 2 cut(s) 32, 146
TspDTI ATGAA 3 cut(s) 511, 882, 938
TspGWI ACGGA 1 cut(s) 1179
TspRI CASTG 2 cut(s) 160, 519
VpaK11BI GGWCC 2 cut(s) 332, 944
XapI RAATTY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 3 cut(s) 108, 120, 1121
ZrmI AGTACT 3 cut(s) 112, 124, 848
Zsp2I ATGCAT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.