Rorug02G0055600

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017214
Physical Location & Seq
Forward (+)
4327249 .. 4328551
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0055600.1

Sequence Viewer

Length: 510 bp
ATGGTTGATACATTTGGGTTCGTGGATCCTGCACGGGTCGTCTCTATTGGGGTATCAAATTCAAAGAATGTAGTGAACAATTTAGTACAACGGATGCAACATGGAAAGTCTCATCGTATATTTTTGGTGCCTTACAATCCCAGTGACCATTGGATGTTGACTATAATAAATGAAGAAAAAGACATTGTCTACATTGTGGACTCTTTGGAAAGACAATACCCCGAGTGGATGGAAACTGTGAACAATGCAATCAAATTATTTAATGGAATTACGGGTAGACATGGCAAAAAAGCACCACGATGGATAAATCTCTCGGGTGCACCAAAACAAGTGGGCGGTGGTGAATGTGGCTACTATGTCATGAGATACATGAAGGAACTGATTGAGGATCCAATGCTTTCTTTTGCACAGAAGTGGAGTAGGAAGTCGAAGAGAACCAGCTACTCACAAGAGCAAATTGATGAGGTGCGGATTGAATGGAGTGAGTTTGTTACAAGGAAATACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

169

Amino Acids

19.72

Weight (kDa)

9.14

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 40 - 151 6.1e-11 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017214)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09430
malus_domestica MD02G1102600.v1.1
prunus_persica Prupe.7G191700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0095981
rosa_laevigata RLG00000016614
rosa_multiflora Rmu_sc0002497.1_g000009
rosa_roxburghii Rroxscaffold_2G00145890
rosa_rugosa Rorug02G0055600
rosa_samantha Rh2AG103500 Rh2BG105000 Rh2CG107500 Rh2DG105400
rosa_wichuraiana Rw2G007890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AccI GTMKAC 2 cut(s) 189, 277
AciI CCGC 2 cut(s) 336, 469
AclWI GGATC 4 cut(s) 20, 33, 383, 396
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 1 cut(s) 87
AgsI TTSAA 2 cut(s) 63, 476
AleI CACNNNNGTG 1 cut(s) 412
AluBI AGCT 1 cut(s) 441
AluI AGCT 1 cut(s) 441
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 2 cut(s) 46, 114
Alw44I GTGCAC 1 cut(s) 318
AlwI GGATC 4 cut(s) 20, 33, 383, 396
Ama87I CYCGRG 2 cut(s) 221, 313
ApaLI GTGCAC 1 cut(s) 318
ApoI RAATTY 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 353
AvaI CYCGRG 2 cut(s) 221, 313
BaeGI GKGCMC 1 cut(s) 322
BamHI GGATCC 2 cut(s) 25, 388
BanI GGYRCC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 322
BccI CCATC 2 cut(s) 223, 294
BcoDI GTCTC 2 cut(s) 46, 114
BmeT110I CYCGRG 2 cut(s) 221, 313
BmiI GGNNCC 3 cut(s) 27, 129, 390
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 99, 159, 234
BseNI ACTGG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 322
BsiHKCI CYCGRG 2 cut(s) 221, 313
BsmAI GTCTC 2 cut(s) 46, 114
BsmBI CGTCTC 1 cut(s) 46
BsoBI CYCGRG 2 cut(s) 221, 313
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 25, 388
BspACI CCGC 2 cut(s) 336, 469
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 3 cut(s) 27, 129, 390
BspPI GGATC 4 cut(s) 20, 33, 383, 396
BspT107I GGYRCC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 141
BssMI GATC 2 cut(s) 25, 388
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 425
BstF5I GGATG 3 cut(s) 99, 159, 234
BstKTI GATC 2 cut(s) 28, 391
BstMAI GTCTC 2 cut(s) 46, 114
BstMBI GATC 2 cut(s) 25, 388
BstSLI GKGCMC 1 cut(s) 322
BstX2I RGATCY 2 cut(s) 25, 388
BstYI RGATCY 2 cut(s) 25, 388
BtsCI GGATG 3 cut(s) 99, 159, 234
BtsIMutI CAGTG 1 cut(s) 148
CciI TCATGA 1 cut(s) 360
Csp6I GTAC 1 cut(s) 86
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviAII CATG 4 cut(s) 101, 281, 361, 370
CviJI RGCY 2 cut(s) 351, 441
CviKI_1 RGCY 2 cut(s) 351, 441
CviQI GTAC 1 cut(s) 86
DpnI GATC 2 cut(s) 27, 390
DpnII GATC 2 cut(s) 25, 388
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco88I CYCGRG 2 cut(s) 221, 313
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 4 cut(s) 104, 284, 364, 373
FaiI YATR 7 cut(s) 102, 119, 164, 282, 357, 362, 371
FatI CATG 4 cut(s) 100, 280, 360, 369
FblI GTMKAC 2 cut(s) 189, 277
FokI GGATG 3 cut(s) 106, 166, 241
Hin1II CATG 4 cut(s) 104, 284, 364, 373
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 1 cut(s) 200
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 7 cut(s) 76, 159, 190, 199, 241, 278, 320
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 7 cut(s) 76, 159, 190, 199, 241, 278, 320
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 5 cut(s) 32, 97, 248, 320, 407
Hsp92II CATG 4 cut(s) 104, 284, 364, 373
Kzo9I GATC 2 cut(s) 25, 388
LpnPI CCDG 3 cut(s) 42, 154, 451
LweI GCATC 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 143, 490
MalI GATC 2 cut(s) 27, 390
MboI GATC 2 cut(s) 25, 388
MboII GAAGA 2 cut(s) 185, 442
MflI RGATCY 2 cut(s) 25, 388
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 5 cut(s) 58, 79, 254, 267, 456
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 2 cut(s) 379, 457
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 2 cut(s) 298, 412
NdeII GATC 2 cut(s) 25, 388
NlaIII CATG 4 cut(s) 104, 284, 364, 373
NlaIV GGNNCC 3 cut(s) 27, 129, 390
NmuCI GTSAC 1 cut(s) 143
OliI CACNNNNGTG 1 cut(s) 412
PagI TCATGA 1 cut(s) 360
PflFI GACNNNGTC 1 cut(s) 185
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PspN4I GGNNCC 3 cut(s) 27, 129, 390
PsuI RGATCY 2 cut(s) 25, 388
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
RseI CAYNNNNRTG 2 cut(s) 298, 412
SaqAI TTAA 1 cut(s) 261
Sau3AI GATC 2 cut(s) 25, 388
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 322
SetI ASST 2 cut(s) 443, 468
SfaNI GCATC 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 298, 412
Sse9I AATT 5 cut(s) 58, 79, 254, 267, 456
SsiI CCGC 2 cut(s) 336, 469
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 428
TasI AATT 5 cut(s) 58, 79, 254, 267, 456
TatI WGTACW 1 cut(s) 85
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 186, 386
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 148
Tth111I GACNNNGTC 1 cut(s) 185
VneI GTGCAC 1 cut(s) 318
XapI RAATTY 1 cut(s) 58
XmiI GTMKAC 2 cut(s) 189, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.