FvH4_1g11431

Rho (Ras homology) subfamily of Ras-like small GTPases

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
6234522 .. 6236216
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11431.t1

Sequence Viewer

Length: 1506 bp
ATGGGCCCTAATGGGAGGAAACAGCAAGCAGCTGCAGATCACTATACCTTGCTGGGTTTAATCGATCTAAGAGAAGCTGCCACTCCGGAACAGATTCGAAAACCCTATCTCATAAGCGCCTTGAAATACCATCCTGACAAGCACAGCTCCCTTATTCTCGCCGAGCCAACCGAAAAGGCCAGAGAAGCCAAGAAGGAAGAGATCGACACAAAGTTCAAGAGAATCGTAGCAGCATATGAAGTGTTGAGTGATCCGGACCAGAAACGAAGATACGACTCCCGACGAATCTATAGCTCCGGTGGGAATGATAGTACTGATAGCGAAGATGATCATCAATCTCATCGGCAGGCGCAGCAGCAGCATGATGATATGGATGATGAAATCCCAACTGAGTGTGCTCCGGGATATTTCTTCAAGCTGTTTGGTCCTGTTTTCGAGAGATTTGCGCAGTGGTCGAAGAACAAACCGGTGCCGGGGTTAGGGGATGAGGGAACTCCGATGGAGACGGTGAAGAATTTCTATAAGTTTTGGTCTAGCTTCGAAAGCAGTAGAGACTTCAAAGTTAGGTATCATTATAAACGTGATAGAGACTGGGCTAAGGAGCAAGAACGTAAACGGATTCAGAGACTTGTTAATAATGTTTATCGGCAAGACCCGAGGATATTGAGGAGAAAGGAAGAGGAGGAAGCCAAGAAGTTGAGGAAAAATATGGAAAAGCGAATGAGGGAGGAGGCGGAAGCTAGGGCTGCCGCTAGGGCGGCTGCTAGGGCGGCTGAGGAGGAGAGGCGGCGGAAAGAAGAGGAGGAGATGCGAGCTGCGGAAGAGGCATTGGAGCAGAAGAAGGTTAAGGAGAGGGAAAAGAAGCTTTTGCAGAAGGAAAGGAGTCGTTTTCGGAAACTCTTATTAGGGTTGGATGGTATTGAGAAGGATGATGTGGAAAGGCTTTGCTTGTGGTTTGATTTTGAGAAGCTTAGGAATGTATGTGAAATAATTGAAGAGGGAAAAGATGATGAAGGACTAATGGACCGGTGGGAAGCTGTTTCGGATTACATTGGTAGCGGAAGATCTGTGGAGGAAGTTCTCAAGGCAATGAAGACAGACGTTCTCAAGAAACCTGATGATAGCAAAGCGTTTGACTCTTTTCTTGAGAAGAGGAAGCCTTCAAATCCTATTGACTCGCTCCTCACAACCAGAATAGAAGTAGATGGGGTAGCGATGTCATCAACTAGTACTAGTACCAGTACCAGTACAAGTCCTTCTCCTCCTCCTAATGATCAGAAGTCTGAAAGTGGAACAACGTTGAGTAATTCGGAGCAGGATGATGTGTGGTCTGATGAGCAAGTAAGGGCAATGATTCAGGCAATGAAGATTCTTCCGAAGGAACTATCCGGCGGTGCGCGGTGGGAGCGAGTTGCTGCTGCTGTTCCAGGGAAGACTGCAATTCAGTGCAAGAAAAAGTATGCATTGCTCAGGGAAAACTTGAGAAGCAAGAAAAGCGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

502

Amino Acids

57.94

Weight (kDa)

8.34

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 13 - 92 7.7e-13 DnaJ domain
ZUO1-like_ZHD PF21884 137 - 240 2e-12 Zuotin-like, zuotin homology domain
Myb_DNA-binding_2 PF23082 335 - 388 4.4e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
Acc16I TGCGCA 1 cut(s) 447
AccB1I GGYRCC 1 cut(s) 469
AccII CGCG 1 cut(s) 1399
AccIII TCCGGA 2 cut(s) 85, 253
AclI AACGTT 1 cut(s) 1298
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 514
AfaI GTAC 5 cut(s) 313, 1231, 1237, 1243, 1249
AfiI CCNNNNNNNGG 2 cut(s) 473, 479
AgeI ACCGGT 2 cut(s) 466, 1026
AgsI TTSAA 6 cut(s) 124, 217, 415, 559, 995, 1164
AhlI ACTAGT 2 cut(s) 1226, 1232
AjnI CCWGG 1 cut(s) 1426
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 4 cut(s) 497, 546, 582, 619
AlwI GGATC 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 655
Aor13HI TCCGGA 2 cut(s) 85, 253
AoxI GGCC 2 cut(s) 4, 177
ApaI GGGCCC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 514
AsiGI ACCGGT 2 cut(s) 466, 1026
Asp700I GAANNNNTTC 2 cut(s) 93, 515
AspLEI GCGC 4 cut(s) 119, 352, 448, 1399
AspS9I GGNCC 5 cut(s) 4, 5, 256, 425, 1024
AsuC2I CCSGG 2 cut(s) 402, 474
AsuHPI GGTGA 1 cut(s) 520
AsuII TTCGAA 2 cut(s) 97, 540
AvaI CYCGRG 1 cut(s) 655
AvaII GGWCC 3 cut(s) 256, 425, 1024
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 1240, 1272
BbsI GAAGAC 2 cut(s) 1100, 1439
Bbv12I GWGCWC 1 cut(s) 400
BbvCI CCTCAGC 1 cut(s) 774
BccI CCATC 4 cut(s) 138, 493, 908, 1199
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BciT130I CCWGG 1 cut(s) 1428
BclI TGATCA 2 cut(s) 328, 1273
BcnI CCSGG 2 cut(s) 402, 474
BcoDI GTCTC 4 cut(s) 497, 546, 582, 619
BcuI ACTAGT 2 cut(s) 1226, 1232
BfaI CTAG 6 cut(s) 534, 741, 753, 765, 1227, 1233
BfmI CTRYAG 2 cut(s) 33, 289
BfoI RGCGCY 1 cut(s) 120
BglI GCCNNNNNGGC 1 cut(s) 755
BglII AGATCT 1 cut(s) 1064
BmcAI AGTACT 2 cut(s) 313, 1231
Bme1390I CCNGG 3 cut(s) 402, 474, 1428
Bme18I GGWCC 3 cut(s) 256, 425, 1024
BmeT110I CYCGRG 1 cut(s) 655
BmgT120I GGNCC 5 cut(s) 4, 5, 256, 425, 1024
BmiI GGNNCC 2 cut(s) 6, 471
BmrFI CCNGG 3 cut(s) 402, 474, 1428
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 2 cut(s) 798, 1489
BmuI ACTGGG 1 cut(s) 601
BpiI GAAGAC 2 cut(s) 1100, 1439
Bpu10I CCTNAGC 4 cut(s) 597, 774, 971, 1469
Bpu14I TTCGAA 2 cut(s) 97, 540
BpuEI CTTGAG 4 cut(s) 1067, 1091, 1166, 1501
BpuMI CCSGG 2 cut(s) 402, 474
Bsa29I ATCGAT 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 330
BsaJI CCNNGG 3 cut(s) 473, 656, 1427
BsaWI WCCGGW 5 cut(s) 85, 253, 296, 466, 1026
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 479
Bse118I RCCGGY 2 cut(s) 466, 1026
Bse1I ACTGG 3 cut(s) 596, 1239, 1245
Bse3DI GCAATG 4 cut(s) 1095, 1356, 1368, 1463
Bse8I GATNNNNATC 1 cut(s) 330
BseAI TCCGGA 2 cut(s) 85, 253
BseBI CCWGG 1 cut(s) 1428
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 473, 656, 1427
BseGI GGATG 6 cut(s) 130, 379, 490, 919, 934, 1324
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 2 cut(s) 473, 479
BseMI GCAATG 4 cut(s) 1095, 1356, 1368, 1463
BseMII CTCAG 3 cut(s) 381, 765, 1483
BseNI ACTGG 3 cut(s) 596, 1239, 1245
BseSI GKGCMC 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 1399
BshFI GGCC 2 cut(s) 6, 179
BshNI GGYRCC 1 cut(s) 469
BshTI ACCGGT 2 cut(s) 466, 1026
BshVI ATCGAT 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 400
BsiHKCI CYCGRG 1 cut(s) 655
BsiSI CCGG 8 cut(s) 86, 254, 297, 401, 467, 473, 1027, 1389
BslI CCNNNNNNNGG 2 cut(s) 473, 479
BsmAI GTCTC 4 cut(s) 497, 546, 582, 619
BsmBI CGTCTC 1 cut(s) 497
BsnI GGCC 2 cut(s) 6, 179
BsoBI CYCGRG 1 cut(s) 655
Bsp119I TTCGAA 2 cut(s) 97, 540
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 2 cut(s) 8, 400
Bsp13I TCCGGA 2 cut(s) 85, 253
Bsp143I GATC 7 cut(s) 37, 64, 201, 250, 328, 1064, 1273
BspANI GGCC 2 cut(s) 6, 179
BspCNI CTCAG 3 cut(s) 382, 766, 1482
BspDI ATCGAT 1 cut(s) 63
BspEI TCCGGA 2 cut(s) 85, 253
BspFNI CGCG 1 cut(s) 1399
BspLI GGNNCC 2 cut(s) 6, 471
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 1 cut(s) 245
BspT104I TTCGAA 2 cut(s) 97, 540
BspT107I GGYRCC 1 cut(s) 469
BsrDI GCAATG 4 cut(s) 1095, 1356, 1368, 1463
BsrFI RCCGGY 2 cut(s) 466, 1026
BsrI ACTGG 3 cut(s) 596, 1239, 1245
BssAI RCCGGY 2 cut(s) 466, 1026
BssECI CCNNGG 3 cut(s) 473, 656, 1427
BssMI GATC 7 cut(s) 37, 64, 201, 250, 328, 1064, 1273
Bst2UI CCWGG 1 cut(s) 1428
Bst4CI ACNGT 1 cut(s) 508
Bst6I CTCTTC 6 cut(s) 192, 672, 792, 816, 990, 1145
BstBI TTCGAA 2 cut(s) 97, 540
BstC8I GCNNGC 3 cut(s) 27, 348, 813
BstDEI CTNAG 6 cut(s) 68, 390, 597, 774, 971, 1469
BstF5I GGATG 6 cut(s) 130, 379, 490, 919, 934, 1324
BstFNI CGCG 1 cut(s) 1399
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 4 cut(s) 119, 352, 448, 1399
BstKTI GATC 7 cut(s) 40, 67, 204, 253, 331, 1067, 1276
BstMAI GTCTC 4 cut(s) 497, 546, 582, 619
BstMBI GATC 7 cut(s) 37, 64, 201, 250, 328, 1064, 1273
BstNI CCWGG 1 cut(s) 1428
BstSCI CCNGG 3 cut(s) 400, 472, 1426
BstSFI CTRYAG 2 cut(s) 33, 289
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 1399
BstV2I GAAGAC 2 cut(s) 1100, 1439
BstX2I RGATCY 1 cut(s) 1064
BstYI RGATCY 1 cut(s) 1064
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 2 cut(s) 6, 179
BsuTUI ATCGAT 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 1229
BtsCI GGATG 6 cut(s) 130, 379, 490, 919, 934, 1324
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 2 cut(s) 455, 1451
Cac8I GCNNGC 3 cut(s) 27, 348, 813
CfoI GCGC 4 cut(s) 119, 352, 448, 1399
Cfr10I RCCGGY 2 cut(s) 466, 1026
Cfr13I GGNCC 5 cut(s) 4, 5, 256, 425, 1024
ClaI ATCGAT 1 cut(s) 63
Csp6I GTAC 5 cut(s) 312, 1230, 1236, 1242, 1248
CspAI ACCGGT 2 cut(s) 466, 1026
CviAII CATG 1 cut(s) 362
CviQI GTAC 5 cut(s) 312, 1230, 1236, 1242, 1248
DdeI CTNAG 6 cut(s) 68, 390, 597, 774, 971, 1469
DpnI GATC 7 cut(s) 39, 66, 203, 252, 330, 1066, 1275
DpnII GATC 7 cut(s) 37, 64, 201, 250, 328, 1064, 1273
Eam1104I CTCTTC 6 cut(s) 192, 672, 792, 816, 990, 1145
EarI CTCTTC 6 cut(s) 192, 672, 792, 816, 990, 1145
EciI GGCGGA 2 cut(s) 749, 805
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 3 cut(s) 256, 425, 1024
Eco88I CYCGRG 1 cut(s) 655
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 1426
EcoT22I ATGCAT 1 cut(s) 1465
EcoT38I GRGCYC 1 cut(s) 8
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 1 cut(s) 365
FatI CATG 1 cut(s) 361
FauNDI CATATG 1 cut(s) 235
FbaI TGATCA 2 cut(s) 328, 1273
FokI GGATG 6 cut(s) 117, 386, 497, 926, 941, 1331
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 6 cut(s) 534, 741, 753, 765, 1227, 1233
FspI TGCGCA 1 cut(s) 447
GlaI GCGC 4 cut(s) 118, 351, 447, 1398
GsaI CCCAGC 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 2 cut(s) 6, 179
HapII CCGG 8 cut(s) 86, 254, 297, 401, 467, 473, 1027, 1389
HhaI GCGC 4 cut(s) 119, 352, 448, 1399
Hin1II CATG 1 cut(s) 365
Hin6I GCGC 4 cut(s) 117, 350, 446, 1397
HinP1I GCGC 4 cut(s) 117, 350, 446, 1397
HindIII AAGCTT 2 cut(s) 863, 968
HpaII CCGG 8 cut(s) 86, 254, 297, 401, 467, 473, 1027, 1389
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 9 cut(s) 498, 624, 894, 1045, 1278, 1285, 1312, 1333, 1377
Hpy188III TCNNGA 8 cut(s) 86, 134, 217, 254, 279, 436, 1108, 1145
Hpy8I GTNNAC 1 cut(s) 614
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 8 cut(s) 187, 835, 868, 919, 1007, 1170, 1266, 1372
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4IV ACGT 4 cut(s) 580, 610, 1101, 1298
HpyCH4V TGCA 5 cut(s) 35, 871, 1439, 1449, 1463
HpyF3I CTNAG 6 cut(s) 68, 390, 597, 774, 971, 1469
HpySE526I ACGT 4 cut(s) 580, 610, 1101, 1298
Hsp92II CATG 1 cut(s) 365
HspAI GCGC 4 cut(s) 117, 350, 446, 1397
Kpn2I TCCGGA 2 cut(s) 85, 253
Ksp22I TGATCA 2 cut(s) 328, 1273
Kzo9I GATC 7 cut(s) 37, 64, 201, 250, 328, 1064, 1273
LmnI GCTCC 8 cut(s) 152, 299, 403, 601, 832, 1185, 1312, 1405
LweI GCATC 2 cut(s) 798, 1489
MaeI CTAG 6 cut(s) 534, 741, 753, 765, 1227, 1233
MaeII ACGT 4 cut(s) 580, 610, 1101, 1298
MalI GATC 7 cut(s) 39, 66, 203, 252, 330, 1066, 1275
MboI GATC 7 cut(s) 37, 64, 201, 250, 328, 1064, 1273
MflI RGATCY 1 cut(s) 1064
MhlI GDGCHC 2 cut(s) 8, 400
MluCI AATT 4 cut(s) 514, 990, 1306, 1440
MlyI GAGTC 4 cut(s) 269, 892, 1130, 1169
MmeI TCCRAC 1 cut(s) 891
Mph1103I ATGCAT 1 cut(s) 1465
MroI TCCGGA 2 cut(s) 85, 253
MroXI GAANNNNTTC 2 cut(s) 93, 515
MseI TTAA 3 cut(s) 59, 633, 846
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 8 cut(s) 86, 254, 297, 401, 467, 473, 1027, 1389
MspR9I CCNGG 3 cut(s) 402, 474, 1428
MvaI CCWGG 1 cut(s) 1428
MvnI CGCG 1 cut(s) 1399
NciI CCSGG 2 cut(s) 402, 474
NdeI CATATG 1 cut(s) 235
NdeII GATC 7 cut(s) 37, 64, 201, 250, 328, 1064, 1273
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 2 cut(s) 6, 471
NmeAIII GCCGAG 1 cut(s) 187
NsbI TGCGCA 1 cut(s) 447
NsiI ATGCAT 1 cut(s) 1465
NspV TTCGAA 2 cut(s) 97, 540
PdmI GAANNNNTTC 2 cut(s) 93, 515
PfeI GAWTC 6 cut(s) 94, 222, 285, 619, 1354, 1369
PfoI TCCNGGA 1 cut(s) 400
PinAI ACCGGT 2 cut(s) 466, 1026
PleI GAGTC 4 cut(s) 269, 891, 1130, 1169
PpsI GAGTC 4 cut(s) 269, 891, 1130, 1169
PsiI TTATAA 1 cut(s) 576
Psp1406I AACGTT 1 cut(s) 1298
Psp6I CCWGG 1 cut(s) 1426
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 1 cut(s) 1426
PspN4I GGNNCC 2 cut(s) 6, 471
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 5 cut(s) 4, 5, 256, 425, 1024
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 1064
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 5 cut(s) 313, 1231, 1237, 1243, 1249
RsaNI GTAC 5 cut(s) 312, 1230, 1236, 1242, 1248
SaqAI TTAA 3 cut(s) 59, 633, 846
Sau3AI GATC 7 cut(s) 37, 64, 201, 250, 328, 1064, 1273
Sau96I GGNCC 5 cut(s) 4, 5, 256, 425, 1024
ScaI AGTACT 2 cut(s) 313, 1231
SchI GAGTC 4 cut(s) 269, 892, 1130, 1169
ScrFI CCNGG 3 cut(s) 402, 474, 1428
SduI GDGCHC 2 cut(s) 8, 400
SfaNI GCATC 2 cut(s) 798, 1489
SfcI CTRYAG 2 cut(s) 33, 289
SfuI TTCGAA 2 cut(s) 97, 540
SinI GGWCC 3 cut(s) 256, 425, 1024
SmlI CTYRAG 4 cut(s) 1082, 1106, 1145, 1480
SmoI CTYRAG 4 cut(s) 1082, 1106, 1145, 1480
SpeI ACTAGT 2 cut(s) 1226, 1232
Sse9I AATT 4 cut(s) 514, 990, 1306, 1440
SspMI CTAG 6 cut(s) 534, 741, 753, 765, 1227, 1233
StyD4I CCNGG 3 cut(s) 400, 472, 1426
TaaI ACNGT 1 cut(s) 508
TaiI ACGT 4 cut(s) 583, 613, 1104, 1301
TaqI TCGA 6 cut(s) 63, 97, 204, 435, 455, 540
TasI AATT 4 cut(s) 514, 990, 1306, 1440
TatI WGTACW 3 cut(s) 311, 1229, 1247
TauI GCSGC 4 cut(s) 752, 761, 773, 790
TfiI GAWTC 6 cut(s) 94, 222, 285, 619, 1354, 1369
Tru1I TTAA 3 cut(s) 59, 633, 846
Tru9I TTAA 3 cut(s) 59, 633, 846
TscAI CASTG 2 cut(s) 455, 1451
TspDTI ATGAA 5 cut(s) 252, 393, 1026, 1106, 1379
TspGWI ACGGA 1 cut(s) 631
TspRI CASTG 2 cut(s) 455, 1451
VpaK11BI GGWCC 3 cut(s) 256, 425, 1024
XapI RAATTY 1 cut(s) 514
XmnI GAANNNNTTC 2 cut(s) 93, 515
XspI CTAG 6 cut(s) 534, 741, 753, 765, 1227, 1233
ZrmI AGTACT 2 cut(s) 313, 1231
Zsp2I ATGCAT 1 cut(s) 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.