Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004170

Physical Location & Seq

Genomic Coordinates Reverse (-)

23419216 .. 23421983

Gene Structure 2768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGGCCTGGGCTCACTCTCGAGTGTGGAGGTTGTTTTGAACGTTATGGGTGTCGAAAGCAAGCTTCGTTTGATTACGTATTCGGAAGAGATAGTAGATGGGCAACCGATCTATGTTTCTTCGAACAGCCTTCCTGTGAAGGCTGTGGGGAAAGAACCGGCTGGGCATTCTTTCCATGCGGTGGCTCTTAAGTTCCGTGGTTGGGTAGAGGAAGTTGCGAGTGCTGACGAGCCGAAGGCGGTTGATAGCAAGGAACAGACGTCTCTGCCGTCGTTTGATTCTTATAGCAGCAGCAAAGGTAAAAAGAAGTCGGGTGGTGAAGGGAAACAACAGGATCACTATGCGTTGCTAGGTTTGAGTCATTTAAGGTATCTCGCCACTGAGGAGCAGATAAGGAAAAGCTACCGTGAGACTGCCTTGAAATATCATCCTGACAAGCAGGCTTCGCTTCTGCTTGCTGAGGAAAGTGAAGCTGCCAAAGAGACAAGGAAGGATGAGATAGAGACCCACTTCAAGTCCATCCAAGAAGCGTATGAGATCTTAATTGATCCTGTGAAGAGAAGAATCTACGACTCCACTGATGAGTTTGATGATGAGATCCCCACTGAATGTGCCCCACAGGATTTTTTCAAGGTGTTTGGCCCTGCTTTTATGAGGAATGGGCGGTGGTCGGTTAACCAACCAATCCCATTTTTAGGTGATGAGAATACATCGTTGAAGGAAGTAGATGATTTTTATAACTTCTGGTATGGCTTCAAGAGTTGGAGAGAGTTCCCCCATGAGGAGGAGTTTGATCTTGAGCAAGCTGAATCTCGTGATCATAAGAGGTGGATGGAGAGGCAAAATGCAAAACTTACAGAAAAGGCTAGAAAGGAGGAGTATGCAAGGATACGTACTCTTGTTGACAATGCCTATAAAAGAGACCCTAGAATCGTGAAGAGAAAGGAAGCAGAGAAAGCTGAGAAGCAGAAGAAAAAGCAGGCCAAGTATTTGGCCAAGAAATTACAGGAGGAGGAAGCAGCCAAGGCGGCTGAAGAGGAGAAGCGACGGAAAGAGGAGGAGGAGAAGCGAGCTGCAGAAGCGGCGTCACAGCAGAAGAAACTAAGAGAGAAGGAGAAGAAACTGTTGCGCAAGGAGCGGAGTCGTCTGCGAACACTTTCTGGGCCTGTTATATCGCAGCGTTTGCTCAATCTTGCTGAGGATGATGTGGAAAGCCTTTGTATGTCTCTTAATATTGAGCAGCTTAGGAATATATGTGACAGGATGGAGGGCAAAGTGGGGGTAGAGCAAGCAAAAGTTCTTAGAAGTGCACATGGTGGAGATAACAATGATGTAGAGGGAAAGAAAGAAGAGGAGAAGAAAACTCCACAACAGAATGGTTCAGTGGTTAGTAATGGTACCGTTCTGTTAAGTAGCTATGAGAAGAAGGAGAAACCATGGAGCAAAGAAGAGATTGAGCTTTTGAGAAAAGCAATGGGGAAATTTCCAAAAGGAACATCTCGAAGGTGGGAAGTTGTATCAGATTTCATTGGTACTGGAAGATCTGTGGAAGAAATTCTGAAGGCAACTAAAACAGTTCTCCTCCAGAAACCTGATTCTAGCAAAGCTTTTGATTCTTTTCTTGAAAAGAGGAAACCTGCACCATCTATTGACTCACCACTGACAACTAGAGTGGAAGTAGAAGGGGTATCATCGACTCAGGAAACTGAAAACAGTGCTGACAAGAGTGCCAAGGCAGAAGATGAGTCTGGAGAGTCGTCAAGTGAAAGTGCAAAAGAGCCGAGTCCTAATGATCCAAATGCTGCAAATGGAGTATCCTCGAGTCCAGAGCAAGATGTGTGGTCAGCTGTACAAGAAAGGGCACTAGTTCAGGCTCTGAAAACCTTTCCAAAGGAAGCCAGTCAGCGGTGGGAGAGAGTTGCTGCTGCTGTTCCTGGGAAAAGTGTGAACCAATGCAAGAAGAAGTTTTCATTGCTGAAGGAGAGCTTCAGAAACAAGAAGAGCTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0040008 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Myb_DNA-binding

Protein Analysis

671

Amino Acids

75.92

Weight (kDa)

7.58

Isoelectric Point (pI)

63.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	112 - 191	1.2e-16	DnaJ domain
ZUO1-like_ZHD	PF21884	208 - 311	9.5e-41	Zuotin-like, zuotin homology domain
Myb_DNA-binding_2	PF23082	478 - 547	8.5e-27	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	613 - 656	6.4e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11450 AT5G06110 AT5G06110
fragaria_vesca	FvH4_1g11431 FvH4_1g11450 FvH4_2g17680 FvH4_2g17680
malus_domestica	MD05G1158000.v1.1 MD10G1150700.v1.1
prunus_persica	Prupe.8G189400_v2.0.a1
pyrus_communis	pycom05g15000 pycom10g12980
rosa_chinensis	RchiOBHm_Chr2g0099031 RchiOBHm_Chr6g0282661
rosa_laevigata	RLG00000012876 RLG00000016841
rosa_multiflora	Rmu_sc0000577.1_g000016 Rmu_sc0003070.1_g000008 Rmu_sc0009422.1_g000005 Rmu_sc0012099.1_g000006
rosa_roxburghii	Rroxscaffold_2G00143480 Rroxscaffold_7G00186130
rosa_rugosa	Rorug06G0148400
rosa_samantha	Rh2AG125200 Rh2BG128400 Rh2CG129400 Rh2DG129600 Rh6AG261800 Rh6BG264900 Rh6CG264000 Rh6DG256200
rosa_wichuraiana	Rw2G009630 Rw6G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
AatII	GACGTC	1 cut(s)	263
Acc16I	TGCGCA	1 cut(s)	1130
Acc36I	ACCTGC	1 cut(s)	1645
Acc65I	GGTACC	1 cut(s)	1397
AccB1I	GGYRCC	1 cut(s)	1397
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccBSI	CCGCTC	1 cut(s)	1138
AciI	CCGC	7 cut(s)	179, 239, 664, 1028, 1082, 1138, 1906
AclI	AACGTT	1 cut(s)	42
AclWI	GGATC	4 cut(s)	342, 542, 592, 1787
AcoI	YGGCCR	1 cut(s)	993
AcsI	RAATTY	2 cut(s)	1481, 1554
AcuI	CTGAAG	4 cut(s)	1053, 1580, 1972, 1997
AcyI	GRCGYC	2 cut(s)	260, 1085
AdeI	CACNNNGTG	1 cut(s)	1316
AfaI	GTAC	4 cut(s)	895, 1399, 1534, 1851
AfiI	CCNNNNNNNGG	6 cut(s)	181, 202, 695, 781, 784, 1905
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	7 cut(s)	40, 421, 514, 631, 718, 757, 1625
AhlI	ACTAGT	1 cut(s)	1864
AjnI	CCWGG	2 cut(s)	6, 1933
Alw21I	GWGCWC	2 cut(s)	1312, 2006
Alw26I	GTCTC	6 cut(s)	267, 404, 476, 497, 915, 1230
Alw44I	GTGCAC	1 cut(s)	1308
AlwI	GGATC	4 cut(s)	342, 542, 592, 1787
AlwNI	CAGNNNCTG	1 cut(s)	1876
Ama87I	CYCGRG	2 cut(s)	19, 1819
AoxI	GGCC	5 cut(s)	4, 640, 981, 993, 1163
ApaLI	GTGCAC	1 cut(s)	1308
ApoI	RAATTY	2 cut(s)	1481, 1554
Asp700I	GAANNNNTTC	2 cut(s)	1156, 1554
Asp718I	GGTACC	1 cut(s)	1397
AspLEI	GCGC	1 cut(s)	1131
AspS9I	GGNCC	3 cut(s)	4, 641, 1163
AsuHPI	GGTGA	3 cut(s)	329, 710, 1647
AsuII	TTCGAA	1 cut(s)	122
AvaI	CYCGRG	2 cut(s)	19, 1819
BaeGI	GKGCMC	3 cut(s)	616, 1312, 1864
BalI	TGGCCA	1 cut(s)	995
BanI	GGYRCC	1 cut(s)	1397
BanII	GRGCYC	2 cut(s)	14, 2006
BauI	CACGAG	1 cut(s)	813
Bbv12I	GWGCWC	2 cut(s)	1312, 2006
BbvCI	CCTCAGC	2 cut(s)	459, 1197
BccI	CCATC	5 cut(s)	92, 527, 826, 1258, 1651
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	2 cut(s)	8, 1935
BciVI	GTATCC	2 cut(s)	882, 1825
BclI	TGATCA	1 cut(s)	817
BcoDI	GTCTC	6 cut(s)	267, 404, 476, 497, 915, 1230
BcuI	ACTAGT	1 cut(s)	1864
BfaI	CTAG	6 cut(s)	350, 867, 927, 1599, 1668, 1865
BfmI	CTRYAG	1 cut(s)	1074
BfrI	CTTAAG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	1645
BfuI	GTATCC	2 cut(s)	882, 1825
BglI	GCCNNNNNGGC	1 cut(s)	1028
BglII	AGATCT	2 cut(s)	537, 1541
Bme1390I	CCNGG	2 cut(s)	8, 1935
BmeT110I	CYCGRG	2 cut(s)	19, 1819
BmgT120I	GGNCC	3 cut(s)	4, 641, 1163
BmiI	GGNNCC	1 cut(s)	1399
BmrFI	CCNGG	2 cut(s)	8, 1935
BpmI	CTGGAG	2 cut(s)	1568, 1770
Bpu10I	CCTNAGC	3 cut(s)	459, 1197, 1244
Bpu14I	TTCGAA	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	818
BsaAI	YACGTR	2 cut(s)	78, 893
BsaHI	GRCGYC	2 cut(s)	260, 1085
BsaI	GGTCTC	2 cut(s)	497, 915
BsaJI	CCNNGG	6 cut(s)	7, 196, 1023, 1436, 1731, 1934
Bsc4I	CCNNNNNNNGG	6 cut(s)	181, 202, 695, 781, 784, 1905
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	1540, 1899
Bse3DI	GCAATG	2 cut(s)	1479, 1970
BseBI	CCWGG	2 cut(s)	8, 1935
BseDI	CCNNGG	6 cut(s)	7, 196, 1023, 1436, 1731, 1934
BseGI	GGATG	6 cut(s)	427, 499, 519, 837, 1207, 1269
BseLI	CCNNNNNNNGG	6 cut(s)	181, 202, 695, 781, 784, 1905
BseMI	GCAATG	2 cut(s)	1479, 1970
BseMII	CTCAG	5 cut(s)	372, 450, 951, 1188, 1712
BseNI	ACTGG	2 cut(s)	1540, 1899
BseSI	GKGCMC	3 cut(s)	616, 1312, 1864
BseYI	CCCAGC	1 cut(s)	161
BsgI	GTGCAG	1 cut(s)	1623
BshFI	GGCC	5 cut(s)	6, 642, 983, 995, 1165
BshNI	GGYRCC	1 cut(s)	1397
BsiHKAI	GWGCWC	2 cut(s)	1312, 2006
BsiHKCI	CYCGRG	2 cut(s)	19, 1819
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	6 cut(s)	181, 202, 695, 781, 784, 1905
BsmAI	GTCTC	6 cut(s)	267, 404, 476, 497, 915, 1230
BsmBI	CGTCTC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	5 cut(s)	6, 642, 983, 995, 1165
Bso31I	GGTCTC	2 cut(s)	497, 915
BsoBI	CYCGRG	2 cut(s)	19, 1819
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	5 cut(s)	14, 616, 1312, 1864, 2006
Bsp1407I	TGTACA	1 cut(s)	1849
Bsp143I	GATC	9 cut(s)	108, 334, 537, 547, 597, 793, 817, 1541, 1792
Bsp19I	CCATGG	1 cut(s)	1436
BspACI	CCGC	7 cut(s)	179, 239, 664, 1028, 1082, 1138, 1906
BspANI	GGCC	5 cut(s)	6, 642, 983, 995, 1165
BspCNI	CTCAG	5 cut(s)	373, 451, 952, 1189, 1711
BspLI	GGNNCC	1 cut(s)	1399
BspMAI	CTGCAG	1 cut(s)	1078
BspMI	ACCTGC	1 cut(s)	1645
BspPI	GGATC	4 cut(s)	342, 542, 592, 1787
BspQI	GCTCTTC	1 cut(s)	1994
BspT104I	TTCGAA	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	1397
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	2 cut(s)	497, 915
BsrBI	CCGCTC	1 cut(s)	1138
BsrDI	GCAATG	2 cut(s)	1479, 1970
BsrFI	RCCGGY	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	1849
BsrI	ACTGG	2 cut(s)	1540, 1899
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	6 cut(s)	7, 196, 1023, 1436, 1731, 1934
BssMI	GATC	9 cut(s)	108, 334, 537, 547, 597, 793, 817, 1541, 1792
BssNI	GRCGYC	2 cut(s)	260, 1085
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	3 cut(s)	1023, 1436, 1731
Bst2BI	CACGAG	1 cut(s)	813
Bst2UI	CCWGG	2 cut(s)	8, 1935
Bst4CI	ACNGT	5 cut(s)	407, 1125, 1402, 1576, 1715
Bst6I	CTCTTC	7 cut(s)	81, 551, 932, 1029, 1344, 1443, 1994
BstACI	GRCGYC	2 cut(s)	260, 1085
BstAFI	CTTAAG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	1183
BstAUI	TGTACA	1 cut(s)	1849
BstBAI	YACGTR	2 cut(s)	78, 893
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	7 cut(s)	62, 441, 456, 804, 981, 1071, 1290
BstDEI	CTNAG	8 cut(s)	381, 459, 960, 1103, 1197, 1244, 1301, 1698
BstDSI	CCRYGG	2 cut(s)	196, 1436
BstF5I	GGATG	6 cut(s)	427, 499, 519, 837, 1207, 1269
BstHHI	GCGC	1 cut(s)	1131
BstKTI	GATC	9 cut(s)	111, 337, 540, 550, 600, 796, 820, 1544, 1795
BstMAI	GTCTC	6 cut(s)	267, 404, 476, 497, 915, 1230
BstMBI	GATC	9 cut(s)	108, 334, 537, 547, 597, 793, 817, 1541, 1792
BstMWI	GCNNNNNNNGC	8 cut(s)	445, 956, 1025, 1028, 1079, 1082, 1135, 1183
BstNI	CCWGG	2 cut(s)	8, 1935
BstSCI	CCNGG	2 cut(s)	6, 1933
BstSFI	CTRYAG	1 cut(s)	1074
BstSLI	GKGCMC	3 cut(s)	616, 1312, 1864
BstSNI	TACGTA	2 cut(s)	78, 893
BstX2I	RGATCY	3 cut(s)	537, 597, 1541
BstXI	CCANNNNNNTGG	1 cut(s)	991
BstYI	RGATCY	3 cut(s)	537, 597, 1541
BsuI	GTATCC	2 cut(s)	882, 1825
BsuRI	GGCC	5 cut(s)	6, 642, 983, 995, 1165
BtgI	CCRYGG	2 cut(s)	196, 1436
BtsCI	GGATG	6 cut(s)	427, 499, 519, 837, 1207, 1269
BtsIMutI	CAGTG	6 cut(s)	378, 576, 603, 1389, 1658, 1720
BveI	ACCTGC	1 cut(s)	1645
Cac8I	GCNNGC	7 cut(s)	62, 441, 456, 804, 981, 1071, 1290
CaiI	CAGNNNCTG	1 cut(s)	1876
CfoI	GCGC	1 cut(s)	1131
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	4, 641, 1163
CseI	GACGC	1 cut(s)	1074
Csp6I	GTAC	4 cut(s)	894, 1398, 1533, 1850
CspCI	CAANNNNNGTGG	4 cut(s)	1653, 1688, 1820, 1855
CviAII	CATG	4 cut(s)	176, 779, 1313, 1437
CviQI	GTAC	4 cut(s)	894, 1398, 1533, 1850
DdeI	CTNAG	8 cut(s)	381, 459, 960, 1103, 1197, 1244, 1301, 1698
DpnI	GATC	9 cut(s)	110, 336, 539, 549, 599, 795, 819, 1543, 1794
DpnII	GATC	9 cut(s)	108, 334, 537, 547, 597, 793, 817, 1541, 1792
DraIII	CACNNNGTG	1 cut(s)	1316
EaeI	YGGCCR	1 cut(s)	993
Eam1104I	CTCTTC	7 cut(s)	81, 551, 932, 1029, 1344, 1443, 1994
EarI	CTCTTC	7 cut(s)	81, 551, 932, 1029, 1344, 1443, 1994
Ecl136II	GAGCTC	1 cut(s)	2004
Eco105I	TACGTA	2 cut(s)	78, 893
Eco130I	CCWWGG	3 cut(s)	1023, 1436, 1731
Eco24I	GRGCYC	2 cut(s)	14, 2006
Eco31I	GGTCTC	2 cut(s)	497, 915
Eco53kI	GAGCTC	1 cut(s)	2004
Eco57I	CTGAAG	4 cut(s)	1053, 1580, 1972, 1997
Eco88I	CYCGRG	2 cut(s)	19, 1819
EcoICRI	GAGCTC	1 cut(s)	2004
EcoRII	CCWGG	2 cut(s)	6, 1933
EcoT14I	CCWWGG	3 cut(s)	1023, 1436, 1731
EcoT38I	GRGCYC	2 cut(s)	14, 2006
ErhI	CCWWGG	3 cut(s)	1023, 1436, 1731
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	4 cut(s)	179, 782, 1316, 1440
FalI	AAGNNNNNCTT	2 cut(s)	1970, 2002
FatI	CATG	4 cut(s)	175, 778, 1312, 1436
FbaI	TGATCA	1 cut(s)	817
FokI	GGATG	6 cut(s)	414, 506, 506, 844, 1214, 1276
FriOI	GRGCYC	2 cut(s)	14, 2006
FspBI	CTAG	6 cut(s)	350, 867, 927, 1599, 1668, 1865
FspI	TGCGCA	1 cut(s)	1130
GlaI	GCGC	1 cut(s)	1130
GsaI	CCCAGC	1 cut(s)	165
GsuI	CTGGAG	2 cut(s)	1568, 1770
HaeIII	GGCC	5 cut(s)	6, 642, 983, 995, 1165
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	1074
HhaI	GCGC	1 cut(s)	1131
Hin1I	GRCGYC	2 cut(s)	260, 1085
Hin1II	CATG	4 cut(s)	179, 782, 1316, 1440
Hin6I	GCGC	1 cut(s)	1129
HinP1I	GCGC	1 cut(s)	1129
HincII	GTYRAC	2 cut(s)	676, 904
HindII	GTYRAC	2 cut(s)	676, 904
HindIII	AAGCTT	2 cut(s)	62, 1605
HpaI	GTTAAC	1 cut(s)	676
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	3 cut(s)	329, 710, 1647
Hpy166II	GTNNAC	4 cut(s)	676, 904, 1310, 1948
Hpy188I	TCNGA	5 cut(s)	85, 1522, 1560, 1878, 1991
Hpy8I	GTNNAC	4 cut(s)	676, 904, 1310, 1948
Hpy99I	CGWCG	2 cut(s)	274, 1050
HpyCH4III	ACNGT	5 cut(s)	407, 1125, 1402, 1576, 1715
HpyCH4IV	ACGT	4 cut(s)	42, 77, 260, 892
HpyCH4V	TGCA	9 cut(s)	848, 884, 1076, 1310, 1640, 1772, 1805, 1956, 2009
HpyF10VI	GCNNNNNNNGC	8 cut(s)	445, 956, 1025, 1028, 1079, 1082, 1135, 1183
HpyF3I	CTNAG	8 cut(s)	381, 459, 960, 1103, 1197, 1244, 1301, 1698
HpySE526I	ACGT	4 cut(s)	42, 77, 260, 892
Hsp92I	GRCGYC	2 cut(s)	260, 1085
Hsp92II	CATG	4 cut(s)	179, 782, 1316, 1440
HspAI	GCGC	1 cut(s)	1129
KpnI	GGTACC	1 cut(s)	1401
Ksp22I	TGATCA	1 cut(s)	817
KspAI	GTTAAC	1 cut(s)	676
Kzo9I	GATC	9 cut(s)	108, 334, 537, 547, 597, 793, 817, 1541, 1792
LguI	GCTCTTC	1 cut(s)	1994
LmnI	GCTCC	3 cut(s)	385, 1135, 1440
MaeI	CTAG	6 cut(s)	350, 867, 927, 1599, 1668, 1865
MaeII	ACGT	4 cut(s)	42, 77, 260, 892
MaeIII	GTNAC	2 cut(s)	1086, 1256
MalI	GATC	9 cut(s)	110, 336, 539, 549, 599, 795, 819, 1543, 1794
MbiI	CCGCTC	1 cut(s)	1138
MboI	GATC	9 cut(s)	108, 334, 537, 547, 597, 793, 817, 1541, 1792
MflI	RGATCY	3 cut(s)	537, 597, 1541
MhlI	GDGCHC	5 cut(s)	14, 616, 1312, 1864, 2006
MlsI	TGGCCA	1 cut(s)	995
MluCI	AATT	4 cut(s)	543, 1001, 1481, 1554
MluNI	TGGCCA	1 cut(s)	995
MlyI	GAGTC	9 cut(s)	367, 566, 1150, 1646, 1690, 1754, 1763, 1792, 1831
MmeI	TCCRAC	1 cut(s)	743
Mox20I	TGGCCA	1 cut(s)	995
MroXI	GAANNNNTTC	2 cut(s)	1156, 1554
MscI	TGGCCA	1 cut(s)	995
MseI	TTAA	6 cut(s)	189, 365, 542, 675, 1230, 1409
Msp20I	TGGCCA	1 cut(s)	995
MspA1I	CMGCKG	2 cut(s)	1847, 1906
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	8, 1935
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	8, 1935
MwoI	GCNNNNNNNGC	8 cut(s)	445, 956, 1025, 1028, 1079, 1082, 1135, 1183
NcoI	CCATGG	1 cut(s)	1436
NdeII	GATC	9 cut(s)	108, 334, 537, 547, 597, 793, 817, 1541, 1792
NlaIII	CATG	4 cut(s)	179, 782, 1316, 1440
NlaIV	GGNNCC	1 cut(s)	1399
NmeAIII	GCCGAG	1 cut(s)	1806
NmuCI	GTSAC	2 cut(s)	1086, 1256
NsbI	TGCGCA	1 cut(s)	1130
NspV	TTCGAA	1 cut(s)	122
PaeR7I	CTCGAG	2 cut(s)	19, 1819
PciSI	GCTCTTC	1 cut(s)	1994
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	2 cut(s)	1156, 1554
PfeI	GAWTC	6 cut(s)	278, 564, 809, 930, 1595, 1613
PflMI	CCANNNNNTGG	1 cut(s)	181
PleI	GAGTC	9 cut(s)	366, 566, 1149, 1646, 1690, 1753, 1762, 1791, 1830
PpsI	GAGTC	9 cut(s)	366, 566, 1149, 1646, 1690, 1753, 1762, 1791, 1830
Ppu21I	YACGTR	2 cut(s)	78, 893
PsiI	TTATAA	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	2006
Psp1406I	AACGTT	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	6, 1933
PspFI	CCCAGC	1 cut(s)	161
PspGI	CCWGG	2 cut(s)	6, 1933
PspN4I	GGNNCC	1 cut(s)	1399
PspPI	GGNCC	3 cut(s)	4, 641, 1163
PspXI	VCTCGAGB	1 cut(s)	1819
PstI	CTGCAG	1 cut(s)	1078
PstNI	CAGNNNCTG	1 cut(s)	1876
PsuI	RGATCY	3 cut(s)	537, 597, 1541
PvuII	CAGCTG	1 cut(s)	1847
RsaI	GTAC	4 cut(s)	895, 1399, 1534, 1851
RsaNI	GTAC	4 cut(s)	894, 1398, 1533, 1850
SacI	GAGCTC	1 cut(s)	2006
SapI	GCTCTTC	1 cut(s)	1994
SaqAI	TTAA	6 cut(s)	189, 365, 542, 675, 1230, 1409
Sau3AI	GATC	9 cut(s)	108, 334, 537, 547, 597, 793, 817, 1541, 1792
Sau96I	GGNCC	3 cut(s)	4, 641, 1163
SchI	GAGTC	9 cut(s)	367, 566, 1150, 1646, 1690, 1754, 1763, 1792, 1831
ScrFI	CCNGG	2 cut(s)	8, 1935
SduI	GDGCHC	5 cut(s)	14, 616, 1312, 1864, 2006
SfcI	CTRYAG	1 cut(s)	1074
Sfr274I	CTCGAG	2 cut(s)	19, 1819
SfuI	TTCGAA	1 cut(s)	122
SlaI	CTCGAG	2 cut(s)	19, 1819
SmlI	CTYRAG	4 cut(s)	19, 188, 797, 1819
SmoI	CTYRAG	4 cut(s)	19, 188, 797, 1819
SnaBI	TACGTA	2 cut(s)	78, 893
SpeI	ACTAGT	1 cut(s)	1864
Sse9I	AATT	4 cut(s)	543, 1001, 1481, 1554
SsiI	CCGC	7 cut(s)	179, 239, 664, 1028, 1082, 1138, 1906
SspI	AATATT	1 cut(s)	1234
SspMI	CTAG	6 cut(s)	350, 867, 927, 1599, 1668, 1865
SstI	GAGCTC	1 cut(s)	2006
StyD4I	CCNGG	2 cut(s)	6, 1933
StyI	CCWWGG	3 cut(s)	1023, 1436, 1731
TaaI	ACNGT	5 cut(s)	407, 1125, 1402, 1576, 1715
TaiI	ACGT	4 cut(s)	45, 80, 263, 895
TaqI	TCGA	6 cut(s)	20, 54, 122, 1501, 1694, 1820
TasI	AATT	4 cut(s)	543, 1001, 1481, 1554
TatI	WGTACW	1 cut(s)	1849
TauI	GCSGC	2 cut(s)	1031, 1085
TfiI	GAWTC	6 cut(s)	278, 564, 809, 930, 1595, 1613
Tru1I	TTAA	6 cut(s)	189, 365, 542, 675, 1230, 1409
Tru9I	TTAA	6 cut(s)	189, 365, 542, 675, 1230, 1409
TscAI	CASTG	6 cut(s)	385, 583, 610, 1389, 1665, 1720
TseFI	GTSAC	2 cut(s)	1086, 1256
Tsp45I	GTSAC	2 cut(s)	1086, 1256
TspDTI	ATGAA	2 cut(s)	1516, 1959
TspGWI	ACGGA	2 cut(s)	185, 1063
TspRI	CASTG	6 cut(s)	385, 583, 610, 1389, 1665, 1720
Van91I	CCANNNNNTGG	1 cut(s)	181
Vha464I	CTTAAG	1 cut(s)	188
VneI	GTGCAC	1 cut(s)	1308
XapI	RAATTY	2 cut(s)	1481, 1554
XhoI	CTCGAG	2 cut(s)	19, 1819
XmnI	GAANNNNTTC	2 cut(s)	1156, 1554
XspI	CTAG	6 cut(s)	350, 867, 927, 1599, 1668, 1865
ZraI	GACGTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.