Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004170

Physical Location & Seq

Genomic Coordinates Forward (+)

18559661 .. 18560830

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAGAGGCAGAATTCAAAACTTTCAGAAAAGGCTAGGAAGGAGGAGTATGCACGAATTCGTACTCTTGTTGACAATGCATATAAAAGAGACCCAAGAATACAGAGGAGAAAGGAAGCAGAGAAAGCTGAGAAGCAGAGGAAAAAAGAGGCCAAATATCTGGCCAAGAAATTACAGGAGGAGGAAGCAGCCAGGGCTGCAGAAGAGGAGAGTAAACGGAAAGAAGAGGAGGCCAAACAAGCTGCAGAAACAGCTTTACAGCAGAAGAAGTTGAAAGAGAAAGAGAAGAAACTCCTGCGCAAAGAAAAAGCTCGCCTTCGAACAGTTTCAGGGCCTGTTACTTCAAAGCATTTGCTTAATCTTTCTGAGGATGATGTGGAAAGTCTCTGTTCGTCTCTTGGTACCGAGCAGCTTAGGAGTATATGTGAGAAGATGGAGGGCAAAGAGGGGGTGGAGAGAGCAGAGGTTCTTAGAGATGCATGTGGATATAAAAACGATTTGGTGGATAAGAAAGAAGAAGAGAAGAAAACTCAACAACAGAATGGTTCCGTGGAGACTAAAGGTACTGTTCAGTTAGGCAGCTATGAGAAGAAGGAAGAGAAACCCTGGAGCAAAGAAGAAATTGAGCTTTTGAGAAAAGGAATGGTAAAATTTCCAAAAGGAACGTCTCGGAGGTGGGGGGTTGTTTCTGATTATATTGGTACTGGACGATCTGTTGAAGAAATTTTGAAGGCAACCAAAACAGTCCTCCTCCAGAAACCTGATTCTAGCAAAGCTTTTGATTCTTTTCTTGAAAAGAGGAAACCCTCACCATCTATTGCTTCTCCACTTACAACTAGAGTCGAAGTAGAAGGGGTACGGACTCCTCAGCCCACAGAAACACCTGCCGTGAAGACAGATGAATCGAGAGAGTCGTCAAGCGGAAGTGCAAAAGACCAAACTCCTATAGATCCGATTGTTGAAAATGGATTATCGTCAGGTTCCGAGCAAGATGTATGGTCTGCTGTACACGAAAGAGCACTGGTTCAGGCTCTGAAAACCTTTCCAAAGGATGCCACTCAGCGATGGGAGCGAGTTGCTGCTGCTGTTCCAGGGAAGTCTGTGGTTCAATGCAAGAAGAAATTTGCGTTGATGAAGGAAAGCTTTAGAAACAAGAAGAGTACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0040008 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Myb_DNA-binding

Protein Analysis

390

Amino Acids

44.04

Weight (kDa)

9.46

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZUO1-like_ZHD	PF21884	1 - 35	5.3e-07	Zuotin-like, zuotin homology domain
Myb_DNA-binding_2	PF23082	201 - 270	2.1e-26	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11450 AT5G06110 AT5G06110
fragaria_vesca	FvH4_1g11431 FvH4_1g11450 FvH4_2g17680 FvH4_2g17680
malus_domestica	MD05G1158000.v1.1 MD10G1150700.v1.1
prunus_persica	Prupe.8G189400_v2.0.a1
pyrus_communis	pycom05g15000 pycom10g12980
rosa_chinensis	RchiOBHm_Chr2g0099031 RchiOBHm_Chr6g0282661
rosa_laevigata	RLG00000012876 RLG00000016841
rosa_multiflora	Rmu_sc0000577.1_g000016 Rmu_sc0003070.1_g000008 Rmu_sc0009422.1_g000005 Rmu_sc0012099.1_g000006
rosa_roxburghii	Rroxscaffold_2G00143480 Rroxscaffold_7G00186130
rosa_rugosa	Rorug06G0148400
rosa_samantha	Rh2AG125200 Rh2BG128400 Rh2CG129400 Rh2DG129600 Rh6AG261800 Rh6BG264900 Rh6CG264000 Rh6DG256200
rosa_wichuraiana	Rw2G009630 Rw6G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	892
Acc16I	TGCGCA	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	892
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AciI	CCGC	1 cut(s)	921
AclWI	GGATC	1 cut(s)	944
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	5 cut(s)	13, 57, 650, 723, 1121
AfaI	GTAC	7 cut(s)	64, 403, 565, 703, 858, 1008, 1162
AgsI	TTSAA	8 cut(s)	18, 274, 345, 719, 730, 794, 962, 1109
AjnI	CCWGG	3 cut(s)	191, 605, 1090
AluBI	AGCT	9 cut(s)	128, 242, 254, 311, 412, 582, 628, 776, 1143
AluI	AGCT	9 cut(s)	128, 242, 254, 311, 412, 582, 628, 776, 1143
Alw21I	GWGCWC	1 cut(s)	1021
Alw26I	GTCTC	5 cut(s)	84, 389, 399, 548, 672
AlwI	GGATC	1 cut(s)	944
AlwNI	CAGNNNCTG	2 cut(s)	335, 1033
AoxI	GGCC	4 cut(s)	150, 162, 231, 332
ApeKI	GCWGC	7 cut(s)	188, 197, 242, 409, 579, 1079, 1082
ApoI	RAATTY	5 cut(s)	13, 57, 650, 723, 1121
ArsI	GACNNNNNNTTYG	2 cut(s)	650, 682
Asp700I	GAANNNNTTC	1 cut(s)	325
Asp718I	GGTACC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	801
AsuII	TTCGAA	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	899
Bbv12I	GWGCWC	1 cut(s)	1021
BbvCI	CCTCAGC	1 cut(s)	867
BbvI	GCAGC	7 cut(s)	184, 200, 229, 421, 591, 1066, 1069
BccI	CCATC	3 cut(s)	427, 820, 1059
BceAI	ACGGC	1 cut(s)	872
BciT130I	CCWGG	3 cut(s)	193, 607, 1092
BcoDI	GTCTC	5 cut(s)	84, 389, 399, 548, 672
BfaI	CTAG	3 cut(s)	36, 768, 837
BfmI	CTRYAG	3 cut(s)	198, 243, 945
BfuAI	ACCTGC	1 cut(s)	892
BisI	GCNGC	7 cut(s)	189, 198, 243, 410, 580, 1080, 1083
BlsI	GCNGC	7 cut(s)	190, 199, 244, 411, 581, 1081, 1084
BmcAI	AGTACT	1 cut(s)	1162
Bme1390I	CCNGG	3 cut(s)	193, 607, 1092
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	3 cut(s)	403, 547, 982
BmrFI	CCNGG	3 cut(s)	193, 607, 1092
BmsI	GCATC	2 cut(s)	466, 1042
BpiI	GAAGAC	1 cut(s)	899
BpmI	CTGGAG	2 cut(s)	628, 737
Bpu10I	CCTNAGC	2 cut(s)	413, 867
Bpu14I	TTCGAA	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	192, 549, 605, 1091
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bse1I	ACTGG	2 cut(s)	709, 1026
BseBI	CCWGG	3 cut(s)	193, 607, 1092
BseDI	CCNNGG	4 cut(s)	192, 549, 605, 1091
BseGI	GGATG	2 cut(s)	376, 1057
BseMII	CTCAG	4 cut(s)	120, 357, 881, 1073
BseNI	ACTGG	2 cut(s)	709, 1026
BseRI	GAGGAG	7 cut(s)	59, 121, 194, 221, 242, 740, 855
BseXI	GCAGC	7 cut(s)	184, 200, 229, 421, 591, 1066, 1069
BshFI	GGCC	4 cut(s)	152, 164, 233, 334
BshNI	GGYRCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	1021
BsmAI	GTCTC	5 cut(s)	84, 389, 399, 548, 672
BsmBI	CGTCTC	2 cut(s)	399, 672
BsnI	GGCC	4 cut(s)	152, 164, 233, 334
Bso31I	GGTCTC	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	1021
Bsp1407I	TGTACA	1 cut(s)	1006
Bsp143I	GATC	2 cut(s)	710, 949
BspACI	CCGC	1 cut(s)	921
BspANI	GGCC	4 cut(s)	152, 164, 233, 334
BspCNI	CTCAG	4 cut(s)	121, 358, 880, 1072
BspLI	GGNNCC	3 cut(s)	403, 547, 982
BspMAI	CTGCAG	2 cut(s)	202, 247
BspMI	ACCTGC	1 cut(s)	892
BspPI	GGATC	1 cut(s)	944
BspT104I	TTCGAA	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	1006
BsrI	ACTGG	2 cut(s)	709, 1026
BssECI	CCNNGG	4 cut(s)	192, 549, 605, 1091
BssMI	GATC	2 cut(s)	710, 949
Bst2UI	CCWGG	3 cut(s)	193, 607, 1092
Bst4CI	ACNGT	3 cut(s)	325, 568, 745
Bst6I	CTCTTC	5 cut(s)	198, 219, 513, 591, 1151
BstAUI	TGTACA	1 cut(s)	1006
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	6 cut(s)	129, 366, 413, 470, 867, 1059
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	2 cut(s)	376, 1057
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	2 cut(s)	713, 952
BstMAI	GTCTC	5 cut(s)	84, 389, 399, 548, 672
BstMBI	GATC	2 cut(s)	710, 949
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 194, 197, 239, 251, 1069
BstNI	CCWGG	3 cut(s)	193, 607, 1092
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	3 cut(s)	191, 605, 1090
BstSFI	CTRYAG	3 cut(s)	198, 243, 945
BstV1I	GCAGC	7 cut(s)	184, 200, 229, 421, 591, 1066, 1069
BstV2I	GAAGAC	1 cut(s)	899
BstX2I	RGATCY	1 cut(s)	949
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	949
BsuRI	GGCC	4 cut(s)	152, 164, 233, 334
BtgI	CCRYGG	1 cut(s)	549
BtgZI	GCGATG	1 cut(s)	1078
BtsCI	GGATG	2 cut(s)	376, 1057
BtsIMutI	CAGTG	1 cut(s)	1019
BveI	ACCTGC	1 cut(s)	892
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	2 cut(s)	335, 1033
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	7 cut(s)	63, 402, 564, 702, 857, 1007, 1161
CviAII	CATG	1 cut(s)	480
CviQI	GTAC	7 cut(s)	63, 402, 564, 702, 857, 1007, 1161
DdeI	CTNAG	6 cut(s)	129, 366, 413, 470, 867, 1059
DpnI	GATC	2 cut(s)	712, 951
DpnII	GATC	2 cut(s)	710, 949
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	5 cut(s)	198, 219, 513, 591, 1151
EarI	CTCTTC	5 cut(s)	198, 219, 513, 591, 1151
Eco31I	GGTCTC	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRI	GAATTC	2 cut(s)	13, 57
EcoRII	CCWGG	3 cut(s)	191, 605, 1090
EcoT22I	ATGCAT	2 cut(s)	82, 481
Esp3I	CGTCTC	2 cut(s)	399, 672
FaeI	CATG	1 cut(s)	483
FalI	AAGNNNNNCTT	4 cut(s)	300, 332, 1127, 1159
FatI	CATG	1 cut(s)	479
Fnu4HI	GCNGC	7 cut(s)	189, 198, 243, 410, 580, 1080, 1083
FokI	GGATG	2 cut(s)	383, 1064
Fsp4HI	GCNGC	7 cut(s)	189, 198, 243, 410, 580, 1080, 1083
FspBI	CTAG	3 cut(s)	36, 768, 837
FspI	TGCGCA	1 cut(s)	299
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	7 cut(s)	189, 198, 243, 410, 580, 1080, 1083
GsuI	CTGGAG	2 cut(s)	628, 737
HaeIII	GGCC	4 cut(s)	152, 164, 233, 334
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	483
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	2 cut(s)	774, 1141
HinfI	GANTC	6 cut(s)	764, 782, 840, 862, 902, 911
HphI	GGTGA	1 cut(s)	801
Hpy166II	GTNNAC	3 cut(s)	73, 215, 1009
Hpy188I	TCNGA	7 cut(s)	28, 367, 672, 691, 954, 985, 1035
Hpy188III	TCNNGA	3 cut(s)	754, 791, 906
Hpy8I	GTNNAC	3 cut(s)	73, 215, 1009
HpyAV	CCTTC	6 cut(s)	34, 326, 586, 724, 845, 1129
HpyCH4III	ACNGT	3 cut(s)	325, 568, 745
HpyCH4IV	ACGT	1 cut(s)	665
HpyCH4V	TGCA	7 cut(s)	53, 80, 200, 245, 479, 929, 1113
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 194, 197, 239, 251, 1069
HpyF3I	CTNAG	6 cut(s)	129, 366, 413, 470, 867, 1059
HpySE526I	ACGT	1 cut(s)	665
Hsp92II	CATG	1 cut(s)	483
HspAI	GCGC	1 cut(s)	298
KpnI	GGTACC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	710, 949
LmnI	GCTCC	2 cut(s)	609, 1069
Lsp1109I	GCAGC	7 cut(s)	184, 200, 229, 421, 591, 1066, 1069
LweI	GCATC	2 cut(s)	466, 1042
MaeI	CTAG	3 cut(s)	36, 768, 837
MaeII	ACGT	1 cut(s)	665
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	712, 951
MboI	GATC	2 cut(s)	710, 949
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	1 cut(s)	1021
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	7 cut(s)	13, 57, 170, 621, 650, 723, 1121
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	3 cut(s)	849, 856, 920
Mox20I	TGGCCA	1 cut(s)	164
Mph1103I	ATGCAT	2 cut(s)	82, 481
MroXI	GAANNNNTTC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	2 cut(s)	357, 1168
Msp20I	TGGCCA	1 cut(s)	164
MspR9I	CCNGG	3 cut(s)	193, 607, 1092
MvaI	CCWGG	3 cut(s)	193, 607, 1092
MwoI	GCNNNNNNNGC	6 cut(s)	125, 194, 197, 239, 251, 1069
NdeII	GATC	2 cut(s)	710, 949
NlaIII	CATG	1 cut(s)	483
NlaIV	GGNNCC	3 cut(s)	403, 547, 982
NsbI	TGCGCA	1 cut(s)	299
NsiI	ATGCAT	2 cut(s)	82, 481
NspI	RCATGY	1 cut(s)	483
NspV	TTCGAA	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	892
PcsI	WCGNNNNNNNCGW	1 cut(s)	911
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	764, 782, 902
PkrI	GCNGC	7 cut(s)	190, 199, 244, 411, 581, 1081, 1084
PleI	GAGTC	3 cut(s)	848, 856, 919
PpsI	GAGTC	3 cut(s)	848, 856, 919
Psp6I	CCWGG	3 cut(s)	191, 605, 1090
PspGI	CCWGG	3 cut(s)	191, 605, 1090
PspN4I	GGNNCC	3 cut(s)	403, 547, 982
PspPI	GGNCC	1 cut(s)	332
PstI	CTGCAG	2 cut(s)	202, 247
PstNI	CAGNNNCTG	2 cut(s)	335, 1033
PsuI	RGATCY	1 cut(s)	949
RsaI	GTAC	7 cut(s)	64, 403, 565, 703, 858, 1008, 1162
RsaNI	GTAC	7 cut(s)	63, 402, 564, 702, 857, 1007, 1161
SaqAI	TTAA	2 cut(s)	357, 1168
SatI	GCNGC	7 cut(s)	189, 198, 243, 410, 580, 1080, 1083
Sau3AI	GATC	2 cut(s)	710, 949
Sau96I	GGNCC	1 cut(s)	332
ScaI	AGTACT	1 cut(s)	1162
SchI	GAGTC	3 cut(s)	849, 856, 920
ScrFI	CCNGG	3 cut(s)	193, 607, 1092
SduI	GDGCHC	1 cut(s)	1021
SfaNI	GCATC	2 cut(s)	466, 1042
SfcI	CTRYAG	3 cut(s)	198, 243, 945
SfuI	TTCGAA	1 cut(s)	319
Sse9I	AATT	7 cut(s)	13, 57, 170, 621, 650, 723, 1121
SsiI	CCGC	1 cut(s)	921
SspMI	CTAG	3 cut(s)	36, 768, 837
StyD4I	CCNGG	3 cut(s)	191, 605, 1090
TaaI	ACNGT	3 cut(s)	325, 568, 745
TaiI	ACGT	1 cut(s)	668
TaqI	TCGA	3 cut(s)	319, 843, 905
TasI	AATT	7 cut(s)	13, 57, 170, 621, 650, 723, 1121
TatI	WGTACW	2 cut(s)	1006, 1160
TfiI	GAWTC	3 cut(s)	764, 782, 902
Tru1I	TTAA	2 cut(s)	357, 1168
Tru9I	TTAA	2 cut(s)	357, 1168
TscAI	CASTG	1 cut(s)	1026
TseI	GCWGC	7 cut(s)	188, 197, 242, 409, 579, 1079, 1082
TspDTI	ATGAA	2 cut(s)	915, 1148
TspGWI	ACGGA	3 cut(s)	232, 538, 874
TspRI	CASTG	1 cut(s)	1026
XapI	RAATTY	5 cut(s)	13, 57, 650, 723, 1121
XceI	RCATGY	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	3 cut(s)	36, 768, 837
ZrmI	AGTACT	1 cut(s)	1162
Zsp2I	ATGCAT	2 cut(s)	82, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.