Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004170

Physical Location & Seq

Genomic Coordinates Reverse (-)

6238822 .. 6240435

Gene Structure 1614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGGTTCTAATGGGAGGAAGCAGCAAGCAGCTGCAGATCACTATACCTTGCTAGGTTTAAGCGATCTAAGAGAGGCTGCCACTCCGGAACAGATTAGAAAAGCCTATCTCATTAGCGCATTGAAATACCATCCTGACAAGCACACCTCCCTTATTCTCGCCGAGCCAACCGAAGCCGCAAGACAAGCCAAGAAGGAAAAGATCGACACAAAGTTCAAGAGAATCGTAGCAGCATATGAAGTGTTGAGTGATCCGGGCCAGAAACGAAGATACGACTCCCGAAGAATATATAGCTCCGATGGGAATGATAGTAGTGATAGCGAAGATGATCATCAACCTCATCAGCAACAGGCGCAGCAGCATGATGATACGGACGATGAAATCCCCACTGAGTGTGCTCCGGGGTATTTCTTCCAGGTGTTTGGTCCTGTTTTCGAGAGATTTGCGCGGTGGTCGGCTAACAAACCGGTGCCGGGGTTAGGGAAGGAGGGAACTCCGATGGAGACAGTGGACAAGTTCTATGAGTTTTGGTTTAAATTCAAAATCAGTAGAGACTTCACAGATAAGTATCATTATGAACGTGATAAAGACTGCGCTAAGAAGCAGGAGTATTTAAAAATTCTGAAACTTGTTAAGAATGTATATAAAAAAGACCCGAGGAGATTGAGGAGAGAGGAAGAGGAGGAAGCCAAGAAGTTGAGGGAAAATATGGAAAAGCAAATGAGGAAGGAGGCGAAAGCTAGTGCTGCTGCTAGGGCGGCTGCTAGGGCAGCTGAGGAGGAGAGGCGGCGAAAAGAAGAGAAGGAGAAGCGAGCTGCGGAAGCGGCTTTGGAGCAGAAGAAGGATGATGTGGAAAGGCTTTGCTTGTGGTTTGATTTTGAGAAGCTTATGAATGAAAATGCGAGTAACAGTGATGGTGATGGTAGTGTTAAGGAAGAGAGACCTTGGGGAAAAGAAGAGATTGAGCTATTAAGGAAAGGGAGGGAGACATTTCCTAAAGGAACACCGCGAAGGTGGGAGGCTGTTTCGGATTACATTGGTACCGGAAGATCTGTGGAGGAAGTTGTCAAGGCAATGAAGACAGTGCTGGACAAGCAACCTGATGTTAGCAAAGCGTTTGACTCTTTTCTTGAGAAGAGGAAGCCTTCAAAATCTATTGATTCGTCCCTCACAACAAGAAAAGAAGTAGAAGGGGTAATGTCATCCACTAGTACTAGTACGAGTCCTCCTCCTCTTAATGATCAGAAGTCTGAAGTTGGATCAACGTCGAGTAGTTCGGAGCAGGATGATGTGTGGTCTGATGAGCAAGTAAGGGCAATGATTCAGGCAATGAAGATTCTTCTGAAGGAACTATCTGGCGGTGCGCGGGGGAAGCTAGTAGCTAGTAGCTACTGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632 Ras

Protein Analysis

467

Amino Acids

53.33

Weight (kDa)

8.06

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	13 - 92	3.4e-14	DnaJ domain
ZUO1-like_ZHD	PF21884	137 - 236	4e-10	Zuotin-like, zuotin homology domain
Myb_DNA-binding_2	PF23082	314 - 383	3e-23	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11450 AT5G06110 AT5G06110
fragaria_vesca	FvH4_1g11431 FvH4_1g11450 FvH4_2g17680 FvH4_2g17680
malus_domestica	MD05G1158000.v1.1 MD10G1150700.v1.1
prunus_persica	Prupe.8G189400_v2.0.a1
pyrus_communis	pycom05g15000 pycom10g12980
rosa_chinensis	RchiOBHm_Chr2g0099031 RchiOBHm_Chr6g0282661
rosa_laevigata	RLG00000012876 RLG00000016841
rosa_multiflora	Rmu_sc0000577.1_g000016 Rmu_sc0003070.1_g000008 Rmu_sc0009422.1_g000005 Rmu_sc0012099.1_g000006
rosa_roxburghii	Rroxscaffold_2G00143480 Rroxscaffold_7G00186130
rosa_rugosa	Rorug06G0148400
rosa_samantha	Rh2AG125200 Rh2BG128400 Rh2CG129400 Rh2DG129600 Rh6AG261800 Rh6BG264900 Rh6CG264000 Rh6DG256200
rosa_wichuraiana	Rw2G009630 Rw6G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1040
AccB1I	GGYRCC	2 cut(s)	469, 1040
AccII	CGCG	3 cut(s)	448, 1009, 1366
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	9 cut(s)	177, 448, 758, 787, 818, 824, 1007, 1359, 1366
AclWI	GGATC	2 cut(s)	245, 1267
AcsI	RAATTY	2 cut(s)	536, 618
AcuI	CTGAAG	2 cut(s)	1272, 1364
AdeI	CACNNNGTG	1 cut(s)	393
AfaI	GTAC	4 cut(s)	1042, 1213, 1219, 1396
AfiI	CCNNNNNNNGG	2 cut(s)	473, 479
AgeI	ACCGGT	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	124, 217, 541, 1149
AhlI	ACTAGT	2 cut(s)	1208, 1214
AjnI	CCWGG	1 cut(s)	414
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	4 cut(s)	497, 546, 934, 980
AlwI	GGATC	2 cut(s)	245, 1267
Ama87I	CYCGRG	1 cut(s)	655
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	536, 618
AsiGI	ACCGGT	1 cut(s)	466
Asp718I	GGTACC	1 cut(s)	1040
AspLEI	GCGC	5 cut(s)	119, 355, 448, 596, 1366
AspS9I	GGNCC	2 cut(s)	256, 425
AsuC2I	CCSGG	3 cut(s)	255, 402, 474
AsuHPI	GGTGA	1 cut(s)	929
AvaI	CYCGRG	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	425
BaeI	ACNNNNGTAYC	2 cut(s)	1024, 1057
BanI	GGYRCC	2 cut(s)	469, 1040
BbsI	GAAGAC	1 cut(s)	1085
Bbv12I	GWGCWC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	774
BccI	CCATC	5 cut(s)	138, 293, 493, 908, 914
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	1 cut(s)	416
BclI	TGATCA	2 cut(s)	328, 1240
BcnI	CCSGG	3 cut(s)	255, 402, 474
BcoDI	GTCTC	4 cut(s)	497, 546, 934, 980
BcuI	ACTAGT	2 cut(s)	1208, 1214
BfaI	CTAG	8 cut(s)	53, 741, 753, 765, 1209, 1215, 1376, 1383
BfmI	CTRYAG	1 cut(s)	33
BglII	AGATCT	1 cut(s)	1049
BmcAI	AGTACT	1 cut(s)	1213
Bme1390I	CCNGG	4 cut(s)	255, 402, 416, 474
Bme18I	GGWCC	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	256, 425
BmiI	GGNNCC	2 cut(s)	471, 1042
BmrFI	CCNGG	4 cut(s)	255, 402, 416, 474
BpiI	GAAGAC	1 cut(s)	1085
BplI	GAGNNNNNCTC	2 cut(s)	1213, 1245
Bpu10I	CCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	1151
BpuMI	CCSGG	3 cut(s)	255, 402, 474
BsaAI	YACGTR	1 cut(s)	1398
BsaBI	GATNNNNATC	2 cut(s)	330, 567
BsaI	GGTCTC	1 cut(s)	934
BsaJI	CCNNGG	4 cut(s)	401, 473, 656, 944
BsaWI	WCCGGW	3 cut(s)	85, 466, 1043
BsaXI	ACNNNNNCTCC	2 cut(s)	1210, 1240
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 479
Bse118I	RCCGGY	1 cut(s)	466
Bse3DI	GCAATG	3 cut(s)	1080, 1323, 1335
Bse8I	GATNNNNATC	2 cut(s)	330, 567
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	4 cut(s)	401, 473, 656, 944
BseGI	GGATG	4 cut(s)	130, 850, 1202, 1291
BseJI	GATNNNNATC	2 cut(s)	330, 567
BseLI	CCNNNNNNNGG	2 cut(s)	473, 479
BseMI	GCAATG	3 cut(s)	1080, 1323, 1335
BseMII	CTCAG	2 cut(s)	381, 765
BseRI	GAGGAG	7 cut(s)	673, 682, 695, 791, 794, 1218, 1221
Bsh1236I	CGCG	3 cut(s)	448, 1009, 1366
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	2 cut(s)	469, 1040
BshTI	ACCGGT	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	655
BsiSI	CCGG	6 cut(s)	86, 254, 401, 467, 473, 1044
BslFI	GGGAC	1 cut(s)	1150
BslI	CCNNNNNNNGG	2 cut(s)	473, 479
BsmAI	GTCTC	4 cut(s)	497, 546, 934, 980
BsmFI	GGGAC	1 cut(s)	1150
BsnI	GGCC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	934
BsoBI	CYCGRG	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	8 cut(s)	37, 64, 201, 250, 328, 1049, 1240, 1259
BspACI	CCGC	9 cut(s)	177, 448, 758, 787, 818, 824, 1007, 1359, 1366
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	382, 766
BspEI	TCCGGA	1 cut(s)	85
BspFNI	CGCG	3 cut(s)	448, 1009, 1366
BspLI	GGNNCC	2 cut(s)	471, 1042
BspMAI	CTGCAG	1 cut(s)	37
BspPI	GGATC	2 cut(s)	245, 1267
BspT107I	GGYRCC	2 cut(s)	469, 1040
BspTNI	GGTCTC	1 cut(s)	934
BsrDI	GCAATG	3 cut(s)	1080, 1323, 1335
BsrFI	RCCGGY	1 cut(s)	466
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	4 cut(s)	401, 473, 656, 944
BssMI	GATC	8 cut(s)	37, 64, 201, 250, 328, 1049, 1240, 1259
BssT1I	CCWWGG	1 cut(s)	944
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	4 cut(s)	508, 911, 1084, 1394
Bst6I	CTCTTC	5 cut(s)	672, 792, 930, 951, 1130
BstBAI	YACGTR	1 cut(s)	1398
BstC8I	GCNNGC	2 cut(s)	27, 813
BstDEI	CTNAG	4 cut(s)	68, 390, 597, 774
BstF5I	GGATG	4 cut(s)	130, 850, 1202, 1291
BstFNI	CGCG	3 cut(s)	448, 1009, 1366
BstHHI	GCGC	5 cut(s)	119, 355, 448, 596, 1366
BstKTI	GATC	8 cut(s)	40, 67, 204, 253, 331, 1052, 1243, 1262
BstMAI	GTCTC	4 cut(s)	497, 546, 934, 980
BstMBI	GATC	8 cut(s)	37, 64, 201, 250, 328, 1049, 1240, 1259
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	4 cut(s)	253, 400, 414, 472
BstSFI	CTRYAG	1 cut(s)	33
BstSNI	TACGTA	1 cut(s)	1398
BstUI	CGCG	3 cut(s)	448, 1009, 1366
BstV2I	GAAGAC	1 cut(s)	1085
BstX2I	RGATCY	1 cut(s)	1049
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	1049
BsuRI	GGCC	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	130, 850, 1202, 1291
BtsIMutI	CAGTG	4 cut(s)	387, 513, 916, 1089
Cac8I	GCNNGC	2 cut(s)	27, 813
CfoI	GCGC	5 cut(s)	119, 355, 448, 596, 1366
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	256, 425
Csp6I	GTAC	4 cut(s)	1041, 1212, 1218, 1395
CspAI	ACCGGT	1 cut(s)	466
CviAII	CATG	1 cut(s)	362
CviQI	GTAC	4 cut(s)	1041, 1212, 1218, 1395
DdeI	CTNAG	4 cut(s)	68, 390, 597, 774
DpnI	GATC	8 cut(s)	39, 66, 203, 252, 330, 1051, 1242, 1261
DpnII	GATC	8 cut(s)	37, 64, 201, 250, 328, 1049, 1240, 1259
DraI	TTTAAA	2 cut(s)	535, 615
DraIII	CACNNNGTG	1 cut(s)	393
Eam1104I	CTCTTC	5 cut(s)	672, 792, 930, 951, 1130
EarI	CTCTTC	5 cut(s)	672, 792, 930, 951, 1130
Eco105I	TACGTA	1 cut(s)	1398
Eco130I	CCWWGG	1 cut(s)	944
Eco31I	GGTCTC	1 cut(s)	934
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	2 cut(s)	1272, 1364
Eco88I	CYCGRG	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	944
ErhI	CCWWGG	1 cut(s)	944
FaeI	CATG	1 cut(s)	365
FaqI	GGGAC	1 cut(s)	1150
FatI	CATG	1 cut(s)	361
FauI	CCCGC	1 cut(s)	1359
FauNDI	CATATG	1 cut(s)	235
FbaI	TGATCA	2 cut(s)	328, 1240
FokI	GGATG	4 cut(s)	117, 857, 1189, 1298
FspBI	CTAG	8 cut(s)	53, 741, 753, 765, 1209, 1215, 1376, 1383
GlaI	GCGC	5 cut(s)	118, 354, 447, 595, 1365
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	6 cut(s)	86, 254, 401, 467, 473, 1044
HhaI	GCGC	5 cut(s)	119, 355, 448, 596, 1366
Hin1II	CATG	1 cut(s)	365
Hin6I	GCGC	5 cut(s)	117, 353, 446, 594, 1364
HinP1I	GCGC	5 cut(s)	117, 353, 446, 594, 1364
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	7 cut(s)	222, 275, 1121, 1160, 1222, 1321, 1336
HpaII	CCGG	6 cut(s)	86, 254, 401, 467, 473, 1044
HphI	GGTGA	1 cut(s)	929
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	9 cut(s)	298, 498, 624, 1030, 1245, 1252, 1279, 1300, 1344
Hpy188III	TCNNGA	6 cut(s)	86, 134, 217, 279, 436, 1130
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	1 cut(s)	1270
HpyAV	CCTTC	9 cut(s)	187, 478, 721, 796, 835, 1005, 1155, 1184, 1339
HpyCH4III	ACNGT	4 cut(s)	508, 911, 1084, 1394
HpyCH4IV	ACGT	3 cut(s)	580, 1265, 1397
HpyCH4V	TGCA	1 cut(s)	35
HpyF3I	CTNAG	4 cut(s)	68, 390, 597, 774
HpySE526I	ACGT	3 cut(s)	580, 1265, 1397
Hsp92II	CATG	1 cut(s)	365
HspAI	GCGC	5 cut(s)	117, 353, 446, 594, 1364
Kpn2I	TCCGGA	1 cut(s)	85
KpnI	GGTACC	1 cut(s)	1044
Ksp22I	TGATCA	2 cut(s)	328, 1240
Kzo9I	GATC	8 cut(s)	37, 64, 201, 250, 328, 1049, 1240, 1259
LmnI	GCTCC	4 cut(s)	299, 403, 832, 1279
MaeI	CTAG	8 cut(s)	53, 741, 753, 765, 1209, 1215, 1376, 1383
MaeII	ACGT	3 cut(s)	580, 1265, 1397
MaeIII	GTNAC	1 cut(s)	905
MalI	GATC	8 cut(s)	39, 66, 203, 252, 330, 1051, 1242, 1261
MboI	GATC	8 cut(s)	37, 64, 201, 250, 328, 1049, 1240, 1259
MflI	RGATCY	1 cut(s)	1049
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	536, 618
MlyI	GAGTC	3 cut(s)	269, 1115, 1231
MmeI	TCCRAC	1 cut(s)	1237
MroI	TCCGGA	1 cut(s)	85
MseI	TTAA	7 cut(s)	59, 534, 614, 633, 930, 971, 1236
MspA1I	CMGCKG	2 cut(s)	32, 773
MspI	CCGG	6 cut(s)	86, 254, 401, 467, 473, 1044
MspR9I	CCNGG	4 cut(s)	255, 402, 416, 474
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	3 cut(s)	448, 1009, 1366
NciI	CCSGG	3 cut(s)	255, 402, 474
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	8 cut(s)	37, 64, 201, 250, 328, 1049, 1240, 1259
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	2 cut(s)	471, 1042
NmeAIII	GCCGAG	1 cut(s)	187
PfeI	GAWTC	4 cut(s)	222, 1160, 1321, 1336
PinAI	ACCGGT	1 cut(s)	466
PleI	GAGTC	3 cut(s)	269, 1115, 1230
PpsI	GAGTC	3 cut(s)	269, 1115, 1230
Ppu21I	YACGTR	1 cut(s)	1398
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	471, 1042
PspPI	GGNCC	2 cut(s)	256, 425
PstI	CTGCAG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	1049
PvuII	CAGCTG	2 cut(s)	32, 773
RsaI	GTAC	4 cut(s)	1042, 1213, 1219, 1396
RsaNI	GTAC	4 cut(s)	1041, 1212, 1218, 1395
SaqAI	TTAA	7 cut(s)	59, 534, 614, 633, 930, 971, 1236
Sau3AI	GATC	8 cut(s)	37, 64, 201, 250, 328, 1049, 1240, 1259
Sau96I	GGNCC	2 cut(s)	256, 425
ScaI	AGTACT	1 cut(s)	1213
SchI	GAGTC	3 cut(s)	269, 1115, 1231
ScrFI	CCNGG	4 cut(s)	255, 402, 416, 474
SduI	GDGCHC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	1130
SmoI	CTYRAG	1 cut(s)	1130
SnaBI	TACGTA	1 cut(s)	1398
SpeI	ACTAGT	2 cut(s)	1208, 1214
Sse9I	AATT	2 cut(s)	536, 618
SsiI	CCGC	9 cut(s)	177, 448, 758, 787, 818, 824, 1007, 1359, 1366
SspMI	CTAG	8 cut(s)	53, 741, 753, 765, 1209, 1215, 1376, 1383
StyD4I	CCNGG	4 cut(s)	253, 400, 414, 472
StyI	CCWWGG	1 cut(s)	944
TaaI	ACNGT	4 cut(s)	508, 911, 1084, 1394
TaiI	ACGT	3 cut(s)	583, 1268, 1400
TaqI	TCGA	3 cut(s)	204, 435, 1268
TasI	AATT	2 cut(s)	536, 618
TatI	WGTACW	1 cut(s)	1211
TauI	GCSGC	4 cut(s)	179, 761, 790, 827
TfiI	GAWTC	4 cut(s)	222, 1160, 1321, 1336
Tru1I	TTAA	7 cut(s)	59, 534, 614, 633, 930, 971, 1236
Tru9I	TTAA	7 cut(s)	59, 534, 614, 633, 930, 971, 1236
TscAI	CASTG	4 cut(s)	394, 513, 916, 1089
TspDTI	ATGAA	7 cut(s)	252, 393, 591, 905, 909, 1091, 1346
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	4 cut(s)	394, 513, 916, 1089
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	2 cut(s)	536, 618
XspI	CTAG	8 cut(s)	53, 741, 753, 765, 1209, 1215, 1376, 1383
ZrmI	AGTACT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.