Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004170

Physical Location & Seq

Genomic Coordinates Reverse (-)

21258701 .. 21259345

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0148400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTATGCCCACTGTGGAACTTTGAAGAATGCATACAATATATATAATTGTGTTAGAAGCAAAAGTCTAATTTTTTGGACTACCATGATCAATGTGTATGGGATGCATGGTCATGGCAAGGAAGCCATTTATTTATTCGAGACGATGCATGACCAAAAGATTGTTTCTGATCATATTACGTTTTTGGTTCAAGTCTTTGACATTAAGGGTCAAATGGAAACTGATGATGGGCTTGCAAACAATTTGGAGAAAATATGTTTGCTTATTGCAATTGCAATTATTCAATTGCATTTAAATGAAGCTACTGCGTTGTACAAGGGAATGAACACAAGTGCAATTATTCAATTGCATTCATTATTGAATTGGTTGGTCCAGCCTGAGCATGAACACCGCAAATGGTCTGCTGCAATTTTCTTTGCATTAATCTCAAGTTGCCTACATGTTAATGATCATAAGCAAAAGTTTGGGAATATCGCAAGACTTGTTAAGGTGGTGTGTAGTAGCAAAAGCACCCTTGTCAAAGTAACCTGTGGGGTTATCTTGGGGTTTTCTTGCCATGATCTTCTTAGCAAGGCTGATGCCGCTGATAATTCTAGCCCTGAAACAGACTCAGAAAAAGATGTCAAAAAGGAACTTGCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0040008 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Myb_DNA-binding

Protein Analysis

214

Amino Acids

24.05

Weight (kDa)

6.85

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	24 - 61	4.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11450 AT5G06110 AT5G06110
fragaria_vesca	FvH4_1g11431 FvH4_1g11450 FvH4_2g17680 FvH4_2g17680
malus_domestica	MD05G1158000.v1.1 MD10G1150700.v1.1
prunus_persica	Prupe.8G189400_v2.0.a1
pyrus_communis	pycom05g15000 pycom10g12980
rosa_chinensis	RchiOBHm_Chr2g0099031 RchiOBHm_Chr6g0282661
rosa_laevigata	RLG00000012876 RLG00000016841
rosa_multiflora	Rmu_sc0000577.1_g000016 Rmu_sc0003070.1_g000008 Rmu_sc0009422.1_g000005 Rmu_sc0012099.1_g000006
rosa_roxburghii	Rroxscaffold_2G00143480 Rroxscaffold_7G00186130
rosa_rugosa	Rorug06G0148400
rosa_samantha	Rh2AG125200 Rh2BG128400 Rh2CG129400 Rh2DG129600 Rh6AG261800 Rh6BG264900 Rh6CG264000 Rh6DG256200
rosa_wichuraiana	Rw2G009630 Rw6G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	391, 582
AfaI	GTAC	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	5 cut(s)	25, 191, 284, 344, 361
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	404
AseI	ATTAAT	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	370
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	221
BclI	TGATCA	3 cut(s)	87, 169, 448
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	594
BisI	GCNGC	2 cut(s)	405, 582
BlsI	GCNGC	2 cut(s)	406, 583
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmsI	GCATC	3 cut(s)	93, 135, 568
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	412
BseGI	GGATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	369, 624
BseXI	GCAGC	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsmI	GAATGC	2 cut(s)	34, 349
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	4 cut(s)	87, 169, 448, 559
BspACI	CCGC	2 cut(s)	391, 582
BspCNI	CTCAG	2 cut(s)	370, 623
BsrGI	TGTACA	1 cut(s)	312
BssMI	GATC	4 cut(s)	87, 169, 448, 559
Bst4CI	ACNGT	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	378, 566, 610
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	4 cut(s)	90, 172, 451, 562
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	4 cut(s)	87, 169, 448, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNSI	RCATGY	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	7 cut(s)	85, 107, 113, 149, 383, 440, 557
CviJI	RGCY	6 cut(s)	125, 232, 302, 376, 575, 597
CviKI_1	RGCY	6 cut(s)	125, 232, 302, 376, 575, 597
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	3 cut(s)	378, 566, 610
DpnI	GATC	4 cut(s)	89, 171, 450, 561
DpnII	GATC	4 cut(s)	87, 169, 448, 559
DraI	TTTAAA	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	370
EcoT22I	ATGCAT	3 cut(s)	34, 108, 150
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	7 cut(s)	88, 110, 116, 152, 386, 443, 560
FatI	CATG	7 cut(s)	84, 106, 112, 148, 382, 439, 556
FbaI	TGATCA	3 cut(s)	87, 169, 448
Fnu4HI	GCNGC	2 cut(s)	405, 582
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	2 cut(s)	405, 582
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	2 cut(s)	405, 582
Hin1II	CATG	7 cut(s)	88, 110, 116, 152, 386, 443, 560
HinfI	GANTC	1 cut(s)	608
Hpy188I	TCNGA	2 cut(s)	169, 613
Hpy188III	TCNNGA	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	3 cut(s)	378, 566, 610
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	7 cut(s)	88, 110, 116, 152, 386, 443, 560
Ksp22I	TGATCA	3 cut(s)	87, 169, 448
Kzo9I	GATC	4 cut(s)	87, 169, 448, 559
LpnPI	CCDG	4 cut(s)	386, 390, 541, 612
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	3 cut(s)	93, 135, 568
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	4 cut(s)	89, 171, 450, 561
MboI	GATC	4 cut(s)	87, 169, 448, 559
MboII	GAAGA	2 cut(s)	37, 554
MfeI	CAATTG	3 cut(s)	270, 284, 344
MlyI	GAGTC	1 cut(s)	602
Mph1103I	ATGCAT	3 cut(s)	34, 108, 150
MseI	TTAA	5 cut(s)	204, 293, 422, 444, 486
MslI	CAYNNNNRTG	3 cut(s)	111, 294, 444
MspA1I	CMGCKG	1 cut(s)	584
MunI	CAATTG	3 cut(s)	270, 284, 344
Mva1269I	GAATGC	2 cut(s)	34, 349
MwoI	GCNNNNNNNGC	1 cut(s)	581
NdeII	GATC	4 cut(s)	87, 169, 448, 559
NlaIII	CATG	7 cut(s)	88, 110, 116, 152, 386, 443, 560
NsiI	ATGCAT	3 cut(s)	34, 108, 150
NspI	RCATGY	1 cut(s)	443
PciI	ACATGT	1 cut(s)	439
PctI	GAATGC	2 cut(s)	34, 349
PkrI	GCNGC	2 cut(s)	406, 583
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
PscI	ACATGT	1 cut(s)	439
PshBI	ATTAAT	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	370
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	3 cut(s)	111, 294, 444
SaqAI	TTAA	5 cut(s)	204, 293, 422, 444, 486
SatI	GCNGC	2 cut(s)	405, 582
Sau3AI	GATC	4 cut(s)	87, 169, 448, 559
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	1 cut(s)	602
SetI	ASST	4 cut(s)	182, 304, 492, 530
SfaNI	GCATC	3 cut(s)	93, 135, 568
SinI	GGWCC	1 cut(s)	370
SmiI	ATTTAAAT	1 cut(s)	294
SmiMI	CAYNNNNRTG	3 cut(s)	111, 294, 444
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SsiI	CCGC	2 cut(s)	391, 582
SspMI	CTAG	1 cut(s)	594
SwaI	ATTTAAAT	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	1 cut(s)	138
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	584
Tru1I	TTAA	5 cut(s)	204, 293, 422, 444, 486
Tru9I	TTAA	5 cut(s)	204, 293, 422, 444, 486
TscAI	CASTG	1 cut(s)	17
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	4 cut(s)	312, 338, 342, 399
TspRI	CASTG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	370
VspI	ATTAAT	1 cut(s)	422
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	1 cut(s)	594
Zsp2I	ATGCAT	3 cut(s)	34, 108, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.