Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013589

Physical Location & Seq

Genomic Coordinates Reverse (-)

6713275 .. 6715724

Gene Structure 2450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGTCGTGGGAAGATTGAGATCAAGCTGATTGAGAACCAGACGAACAGGCAGGTGACATATTCGAAGCGACGAAATGGGATCTTCAAGAAGGCTCAAGAGCTCACGGTTCTGTGTGATGCTCATGTCTCCCTCATCATGCAGTCCTCCACTGATAAAATCCACGAGTATATTAGCCCTACCACTACGCACAAGAAGATGTTTGATCTCTACCAAAAGAATTTGCAGATCGATCTATGGAGCTCGCACTACGAGGCAATGAAAGAGAACTTGTGGAAACTGAAGGAGGTTAACAATAAGCTGAGGAGGGACATCAGGCAAAGGCTGGGGCATGATCTAGATGGTCTGAACTTAGCTGAGCTGCAAGATCTGGAGGACAAGATAGCTCAATCCGTGCAGATCATACGTGAAAGAAAGTACCACGTACTGAAGACTCAAGCAGACACTACCTGGAAAAAGGTGAAGAACCAGGAGGAGAGAAACAGTCAATTAGTTCATAGCTATGCAGGTAATGAGGATCCGCAGTATGGTTATGTGGATGATGAAGGAGACTATGAATCTGCGGTTGCATTGGCAAATGGAGCATCCAACTTGTATCTTTTCAATCGCGTCCACAATAACCACAACCTTGACCATGGACATGATGGAGGTTCACTTGTCTCCGGCATTACTCATCTTCACAACCCTATCAATAATCACCACAGCAACCACAACCTTGAGGATGGACACGGTGGAGGTTCATTTATGTCCTCCATTACTCATCTCCATGATCTCCGCCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

262

Amino Acids

30.02

Weight (kDa)

6.83

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 57	1.9e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 166	9.4e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12260
malus_domestica	MD02G1136500.v1.1 MD15G1250200.v1.1
prunus_persica	Prupe.7G164100_v2.0.a1 Prupe.7G164100_v2.0.a1
pyrus_communis	pycom15g22050
rosa_chinensis	RchiOBHm_Chr2g0100071
rosa_laevigata	RLG00000016933
rosa_multiflora	Rmu_sc0000164.1_g000022
rosa_roxburghii	Rroxscaffold_2G00142600
rosa_rugosa	Rorug02G0085000 Rorug02G0085100 Rorug02G0085200
rosa_samantha	Rh2AG134100 Rh2BG137800 Rh2CG139200 Rh2DG139500
rosa_wichuraiana	Rw2G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	2 cut(s)	43, 497
AccII	CGCG	1 cut(s)	609
AciI	CCGC	3 cut(s)	521, 563, 775
AclWI	GGATC	3 cut(s)	89, 512, 525
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	2 cut(s)	302, 449
AfaI	GTAC	2 cut(s)	419, 426
AfiI	CCNNNNNNNGG	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	88, 604
AjnI	CCWGG	2 cut(s)	449, 468
AluBI	AGCT	8 cut(s)	28, 103, 243, 301, 356, 361, 386, 501
AluI	AGCT	8 cut(s)	28, 103, 243, 301, 356, 361, 386, 501
Alw21I	GWGCWC	2 cut(s)	105, 245
Alw26I	GTCTC	3 cut(s)	133, 543, 664
AlwI	GGATC	3 cut(s)	89, 512, 525
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	67, 472, 689
AsuII	TTCGAA	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	517
BanII	GRGCYC	2 cut(s)	105, 245
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	2 cut(s)	105, 245
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	3 cut(s)	335, 638, 716
BciT130I	CCWGG	2 cut(s)	451, 470
BcoDI	GTCTC	3 cut(s)	133, 543, 664
BfaI	CTAG	1 cut(s)	338
BfuAI	ACCTGC	2 cut(s)	43, 497
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	362
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	2 cut(s)	451, 470
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	2 cut(s)	451, 470
BmsI	GCATC	2 cut(s)	109, 593
BpiI	GAAGAC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	392
Bpu10I	CCTNAGC	1 cut(s)	302
Bpu1102I	GCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	3 cut(s)	81, 420, 737
Bsa29I	ATCGAT	1 cut(s)	231
BsaAI	YACGTR	2 cut(s)	407, 424
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	451, 470
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	3 cut(s)	544, 584, 727
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	293, 348
BseRI	GAGGAG	2 cut(s)	319, 488
BseXI	GCAGC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	609
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	105, 245
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	3 cut(s)	133, 543, 664
BsmFI	GGGAC	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	105, 245
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	3 cut(s)	521, 563, 775
BspCNI	CTCAG	2 cut(s)	294, 349
BspDI	ATCGAT	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	519
BspMI	ACCTGC	2 cut(s)	43, 497
BspPI	GGATC	3 cut(s)	89, 512, 525
BspT104I	TTCGAA	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	634
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	634
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	451, 470
Bst4CI	ACNGT	3 cut(s)	109, 485, 731
BstBAI	YACGTR	2 cut(s)	407, 424
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	3 cut(s)	302, 352, 357
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	3 cut(s)	544, 584, 727
BstFNI	CGCG	1 cut(s)	609
BstMAI	GTCTC	3 cut(s)	133, 543, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	2 cut(s)	451, 470
BstSCI	CCNGG	2 cut(s)	449, 468
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	3 cut(s)	81, 367, 517
BstYI	RGATCY	3 cut(s)	81, 367, 517
Bsu15I	ATCGAT	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	544, 584, 727
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	2 cut(s)	43, 497
Cac8I	GCNNGC	1 cut(s)	245
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	418, 425
CviAII	CATG	6 cut(s)	125, 139, 332, 635, 641, 767
CviQI	GTAC	2 cut(s)	418, 425
DdeI	CTNAG	3 cut(s)	302, 352, 357
EciI	GGCGGA	1 cut(s)	764
Ecl136II	GAGCTC	2 cut(s)	103, 243
Eco130I	CCWWGG	1 cut(s)	634
Eco24I	GRGCYC	2 cut(s)	105, 245
Eco53kI	GAGCTC	2 cut(s)	103, 243
Eco57I	CTGAAG	2 cut(s)	302, 449
EcoICRI	GAGCTC	2 cut(s)	103, 243
EcoRII	CCWGG	2 cut(s)	449, 468
EcoT14I	CCWWGG	1 cut(s)	634
EcoT38I	GRGCYC	2 cut(s)	105, 245
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	6 cut(s)	128, 142, 335, 638, 644, 770
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	6 cut(s)	124, 138, 331, 634, 640, 766
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	3 cut(s)	551, 571, 734
FriOI	GRGCYC	2 cut(s)	105, 245
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	362
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	392
HapII	CCGG	1 cut(s)	663
HgaI	GACGC	1 cut(s)	598
Hin1II	CATG	6 cut(s)	128, 142, 335, 638, 644, 770
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	433, 557
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	3 cut(s)	67, 472, 689
Hpy166II	GTNNAC	3 cut(s)	292, 613, 653
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	4 cut(s)	88, 98, 338, 371
Hpy8I	GTNNAC	3 cut(s)	292, 613, 653
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	85, 277, 539
HpyCH4III	ACNGT	3 cut(s)	109, 485, 731
HpyCH4IV	ACGT	2 cut(s)	406, 423
HpyCH4V	TGCA	6 cut(s)	142, 226, 364, 397, 506, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	3 cut(s)	302, 352, 357
HpySE526I	ACGT	2 cut(s)	406, 423
Hsp92II	CATG	6 cut(s)	128, 142, 335, 638, 644, 770
KspAI	GTTAAC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	240, 581
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	2 cut(s)	109, 593
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	406, 423
MaeIII	GTNAC	1 cut(s)	55
MboII	GAAGA	6 cut(s)	25, 76, 208, 442, 475, 668
MflI	RGATCY	3 cut(s)	81, 367, 517
MhlI	GDGCHC	2 cut(s)	105, 245
MluCI	AATT	2 cut(s)	220, 488
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	612
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	3 cut(s)	501, 639, 765
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	2 cut(s)	451, 470
MvaI	CCWGG	2 cut(s)	451, 470
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	1 cut(s)	581
NcoI	CCATGG	1 cut(s)	634
NlaIII	CATG	6 cut(s)	128, 142, 335, 638, 644, 770
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
Ppu21I	YACGTR	2 cut(s)	407, 424
Psp124BI	GAGCTC	2 cut(s)	105, 245
Psp6I	CCWGG	2 cut(s)	449, 468
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	2 cut(s)	449, 468
PspN4I	GGNNCC	1 cut(s)	519
PsuI	RGATCY	3 cut(s)	81, 367, 517
RsaI	GTAC	2 cut(s)	419, 426
RsaNI	GTAC	2 cut(s)	418, 425
RseI	CAYNNNNRTG	3 cut(s)	501, 639, 765
SacI	GAGCTC	2 cut(s)	105, 245
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	451, 470
SduI	GDGCHC	2 cut(s)	105, 245
SfaNI	GCATC	2 cut(s)	109, 593
SfuI	TTCGAA	1 cut(s)	65
SmiMI	CAYNNNNRTG	3 cut(s)	501, 639, 765
SmlI	CTYRAG	3 cut(s)	96, 435, 716
SmoI	CTYRAG	3 cut(s)	96, 435, 716
Sse9I	AATT	2 cut(s)	220, 488
SsiI	CCGC	3 cut(s)	521, 563, 775
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	2 cut(s)	105, 245
StyD4I	CCNGG	2 cut(s)	449, 468
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	3 cut(s)	109, 485, 731
TaiI	ACGT	2 cut(s)	409, 426
TaqI	TCGA	2 cut(s)	65, 231
TasI	AATT	2 cut(s)	220, 488
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	275, 485, 558, 570, 729
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	157
XapI	RAATTY	1 cut(s)	220
XbaI	TCTAGA	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.